Submission Results

Sequence Name: Not Available

GenBank Accession Number: UGKI00000000.1

GenInfo (GI) Number: 0000000000

Download Results: UGKI00000000.1.PHASTER.zip

gi|00000000|ref|UGKI00000000.1| Klebsiella pneumoniae strain NCTC13674, whole genome shotgun 5543766, gc%: 57.31%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
139.9Kbintact120341978056-2017983 info_outlinePHAGE_Klebsi_phiKO2_NC_005857(21)52.80%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|UGKI00000000.1| Klebsiella pneumoniae strain NCTC13674, whole genome shotgun 5543766, gc%: 57.31%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 34 CDS

#CDS PositionBLAST HitE-ValueSequence
11978056..1978289PHAGE_Entero_mEp237_NC_019704: hypothetical protein; NCTC13674_01860; phage(gi435439313)1.89e-34Showinfo_outline
21978632..1979024PHAGE_Shigel_SfIV_NC_022749: regulation protein; NCTC13674_01861; phage(gi557307569)1.52e-19Showinfo_outline
31979224..1980255PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC13674_01862; phage(gi428782365)2.00e-116Showinfo_outline
41980268..1980612PHAGE_Shigel_SfII_NC_021857: antiterminator protein Q; NCTC13674_01863; phage(gi526244682)1.84e-56Showinfo_outline
5complement(1980641..1981495)Uncharacterised protein; NCTC13674_018640.0Showinfo_outline
6complement(1981515..1982033)Uncharacterised protein; NCTC13674_018650.0Showinfo_outline
71982967..1983182PHAGE_Entero_cdtI_NC_009514: lysis protein; NCTC13674_01867; phage(gi148609439)5.30e-40Showinfo_outline
81983182..1983679PHAGE_Salmon_vB_SemP_Emek_NC_018275: lysin; NCTC13674_01868; phage(gi399498856)1.97e-97Showinfo_outline
91983676..1984026PHAGE_Escher_K1_dep(4)_NC_027993: putative spanin; NCTC13674_01869; phage(gi937456914)8.90e-18Showinfo_outline
101984975..1985412PHAGE_Entero_mEp237_NC_019704: hypothetical protein; NCTC13674_01870; phage(gi435439325)5.98e-16Showinfo_outline
11complement(1985451..1985675)Uncharacterised protein; NCTC13674_018710.0Showinfo_outline
121986316..1986639PHAGE_Klebsi_phiKO2_NC_005857: Gp61; NCTC13674_01872; phage(gi46402147)3.85e-07Showinfo_outline
131986636..1987067PHAGE_Klebsi_phiKO2_NC_005857: Gp62; NCTC13674_01873; phage(gi46402148)3.51e-57Showinfo_outline
141987316..1987750PHAGE_Klebsi_phiKO2_NC_005857: putative small terminase subunit; NCTC13674_01874; phage(gi46402087)1.63e-31Showinfo_outline
151987750..1989471PHAGE_Klebsi_phiKO2_NC_005857: putative large terminase subunit; NCTC13674_01875; phage(gi46402088)0.0Showinfo_outline
161989644..1990903PHAGE_Klebsi_phiKO2_NC_005857: putative portal protein; NCTC13674_01876; phage(gi46402090)0.0Showinfo_outline
171990940..1991860PHAGE_Klebsi_phiKO2_NC_005857: putative head maturation protease; NCTC13674_01877; phage(gi46402091)0.0Showinfo_outline
181991938..1993224PHAGE_Klebsi_phiKO2_NC_005857: major capsid head protein precursor; NCTC13674_01878; phage(gi46402092)0.0Showinfo_outline
191993283..1993543PHAGE_Klebsi_phiKO2_NC_005857: Gp7; NCTC13674_01879; phage(gi46402093)1.60e-31Showinfo_outline
201993524..1993841PHAGE_Klebsi_phiKO2_NC_005857: Gp8; NCTC13674_01880; phage(gi46402094)2.65e-62Showinfo_outline
211993838..1994176PHAGE_Klebsi_phiKO2_NC_005857: Gp9; NCTC13674_01881; phage(gi46402095)8.25e-72Showinfo_outline
221994157..1994546PHAGE_Klebsi_phiKO2_NC_005857: Gp10; NCTC13674_01882; phage(gi46402096)6.37e-77Showinfo_outline
231994543..1994944PHAGE_Klebsi_phiKO2_NC_005857: Gp11; NCTC13674_01883; phage(gi46402097)1.15e-87Showinfo_outline
241994976..1995437PHAGE_Klebsi_phiKO2_NC_005857: major tail shaft subunit; NCTC13674_01884; phage(gi46402098)2.21e-88Showinfo_outline
251995495..1995860PHAGE_Klebsi_phiKO2_NC_005857: putative tail assembly chaperone; NCTC13674_01885; phage(gi46402099)8.81e-73Showinfo_outline
261996093..1999428PHAGE_Klebsi_phiKO2_NC_005857: putative tapemeasure protein; NCTC13674_01886; phage(gi46402101)0.0Showinfo_outline
271999428..1999766PHAGE_Klebsi_phiKO2_NC_005857: Gp16; NCTC13674_01887; phage(gi46402102)8.62e-73Showinfo_outline
281999763..2000518PHAGE_Klebsi_phiKO2_NC_005857: Gp17; NCTC13674_01888; phage(gi46402103)5.93e-159Showinfo_outline
292000520..2001230PHAGE_Klebsi_phiKO2_NC_005857: Gp18; NCTC13674_01889; phage(gi46402104)1.38e-165Showinfo_outline
302001262..2001612PHAGE_Entero_HK140_NC_019710: hypothetical protein; NCTC13674_01890; phage(gi428781958)1.00e-15Showinfo_outline
312001628..2002239PHAGE_Klebsi_phiKO2_NC_005857: Gp20; NCTC13674_01891; phage(gi46402106)1.15e-96Showinfo_outline
322002302..2015006PHAGE_Klebsi_phiKO2_NC_005857: Gp21; NCTC13674_01892; phage(gi46402107)0.0Showinfo_outline
332015075..2016502PHAGE_Klebsi_Sushi_NC_028774: tail fiber; NCTC13674_01893; phage(gi971742192)4.19e-18Showinfo_outline
342016925..2017983PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; NCTC13674_01894; phage(gi100150)8.28e-18Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 5543766 bps
Phages: 1
arrow_upwardarrow_upwardarrow_upward
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download