Submission Results

Sequence Name: Not Available

GenBank Accession Number: UGKL00000000.1

GenInfo (GI) Number: 0000000000

Download Results: UGKL00000000.1.PHASTER.zip

gi|00000000|ref|UGKL00000000.1| Klebsiella pneumoniae strain NCTC13684, whole genome shotgun 5433803, gc%: 57.22%

Download summary as .txt file: summary.txt file_download

Total: 8 prophage regions have been identified, of which 4 regions are intact, 3 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
118.3Kbquestionable80191085060-1103361 info_outlinePHAGE_Salmon_ST64B_NC_004313(3)48.82%Show info_outline
28.8Kbincomplete4092420605-2429473 info_outlinePHAGE_Entero_P1_NC_005856(2)57.92%Show info_outline
361.7Kbintact150562684440-2746170 info_outlinePHAGE_Entero_phiP27_NC_003356(11)54.24%Show info_outline
44.2Kbincomplete3063276844-3281114 info_outlinePHAGE_Entero_P1_NC_005856(2)58.93%Show info_outline
548Kbintact150553636058-3684113 info_outlinePHAGE_Entero_HK140_NC_019710(12)50.39%Show info_outline
661.1Kbintact130674256978-4318100 info_outlinePHAGE_Vibrio_pYD38_A_NC_021534(14)53.34%Show info_outline
726.8Kbincomplete60195082877-5109699 info_outlinePHAGE_Entero_P4_NC_001609(6)56.70%Show info_outline
825.1Kbintact150345397030-5422207 info_outlinePHAGE_Entero_HK106_NC_019768(5)51.43%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|UGKL00000000.1| Klebsiella pneumoniae strain NCTC13684, whole genome shotgun 5433803, gc%: 57.22%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 22 CDS

#CDS PositionBLAST HitE-ValueSequence
11085060..1085101attL0.0Showinfo_outline
21085244..1086704PHAGE_Escher_HK75_NC_016160: phage integrase family protein; NCTC13684_01097; phage(gi356870702)2.08e-10Showinfo_outline
31086697..1087422Uncharacterised protein; NCTC13684_010980.0Showinfo_outline
41087785..1088648Uncharacterised protein; NCTC13684_010990.0Showinfo_outline
51088641..1088895Uncharacterised protein; NCTC13684_011000.0Showinfo_outline
61088892..1089260Uncharacterised protein; NCTC13684_011010.0Showinfo_outline
71089257..1091077PHAGE_Entero_P4_NC_001609: DNA primase; NCTC13684_01102; phage(gi9627512)8.88e-158Showinfo_outline
81091357..1091602Uncharacterised protein; NCTC13684_011030.0Showinfo_outline
9complement(1091655..1091864)Uncharacterised protein; NCTC13684_011040.0Showinfo_outline
10complement(1092106..1092429)Uncharacterised protein; NCTC13684_011050.0Showinfo_outline
111092685..1093851PHAGE_Salmon_ST64B_NC_004313: Major capsid protein precursor; NCTC13684_01106; phage(gi23505451)3.39e-62Showinfo_outline
121093902..1094462PHAGE_Clostr_phi3626_NC_003524: putative prohead protease; NCTC13684_01107; phage(gi20065968)1.18e-32Showinfo_outline
131094464..1095699PHAGE_Shigel_SfIV_NC_022749: portal protein; NCTC13684_01108; phage(gi557307529)1.64e-58Showinfo_outline
141095696..1096034PHAGE_Entero_HK97_NC_002167: putative head-tail adaptor; NCTC13684_01109; phage(gi9634168)1.65e-19Showinfo_outline
151096027..1096320PHAGE_Shigel_SfII_NC_021857: head-tail connector protein; NCTC13684_01110; phage(gi526244642)1.18e-07Showinfo_outline
161097039..1097395PHAGE_Psychr_Psymv2_NC_023734: terminase small subunit; NCTC13684_01111; phage(gi593779760)5.27e-18Showinfo_outline
171097379..1099040PHAGE_Brucel_BiPBO1_NC_031264: hypothetical protein; NCTC13684_01112; phage(gi100002)2.59e-102Showinfo_outline
181099156..1100607Predicted ATPase; NCTC13684_011130.0Showinfo_outline
19complement(1100720..1100795)tRNA0.0Showinfo_outline
201100724..1100765attR0.0Showinfo_outline
211100920..1101426G:T/U mismatch-specific uracil/thymine DNA-glycosylase; NCTC13684_011150.0Showinfo_outline
22complement(1101526..1103361)PHAGE_Synech_S_CBS3_NC_015465: group 2 RNA polymerase sigma factor; NCTC13684_01116; phage(gi331028036)4.03e-37Showinfo_outline

Region 2, total 9 CDS

#CDS PositionBLAST HitE-ValueSequence
12420605..2420880PHAGE_Entero_P1_NC_005856: InsA; NCTC13684_02372; phage(gi46401643)1.23e-59Showinfo_outline
22420925..2421302PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC13684_02373; phage(gi557307573)1.57e-81Showinfo_outline
32421547..2421804PHAGE_Erwini_vB_EamM_Kwan_NC_031010: short tail fibers; NCTC13684_02374; phage(gi100183)5.51e-08Showinfo_outline
4complement(2421933..2422892)LysM domain/ErfK/YbiS/YcfS/YnhG family protein; NCTC13684_023750.0Showinfo_outline
5complement(2423022..2423396)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC13684_02376; phage(gi557307573)1.10e-77Showinfo_outline
6complement(2423441..2423716)PHAGE_Entero_P1_NC_005856: InsA; NCTC13684_02377; phage(gi46401643)1.23e-59Showinfo_outline
7complement(2423829..2427275)PHAGE_Vibrio_pYD21_A_NC_020846: helicase; NCTC13684_02378; phage(gi472340490)1.72e-05Showinfo_outline
82427571..2428779lipoprotein releasing system transmembrane protein LolC; NCTC13684_023790.0Showinfo_outline
92428772..2429473PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; NCTC13684_02380; phage(gi371496158)2.00e-42Showinfo_outline

Region 3, total 58 CDS

#CDS PositionBLAST HitE-ValueSequence
12684440..2684451attL0.0Showinfo_outline
22694126..2694905PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; NCTC13684_02661; phage(gi371496158)3.28e-40Showinfo_outline
32694917..2695168amino acid ABC transporter periplasmic amino acid-binding protein; NCTC13684_026620.0Showinfo_outline
42695193..2695795amino acid ABC transporter periplasmic amino acid-binding protein; NCTC13684_026630.0Showinfo_outline
52695873..2695965glutathione S-transferase, theta; NCTC13684_026640.0Showinfo_outline
6complement(2696009..2697262)PHAGE_Entero_phiP27_NC_003356: putative integrase; NCTC13684_02665; phage(gi18249865)0.0Showinfo_outline
7complement(2697318..2697551)PHAGE_Entero_phiP27_NC_003356: putative excisionase; NCTC13684_02666; phage(gi18249866)1.07e-34Showinfo_outline
8complement(2697609..2697821)Uncharacterised protein; NCTC13684_026670.0Showinfo_outline
9complement(2697818..2698042)PHAGE_Salmon_Fels_1_NC_010391: hypothetical protein; NCTC13684_02668; phage(gi169257161)4.45e-25Showinfo_outline
10complement(2698032..2698739)PHAGE_Entero_phiP27_NC_003356: hypothetical protein; NCTC13684_02669; phage(gi18249878)6.72e-99Showinfo_outline
11complement(2698748..2699374)PHAGE_Entero_phiP27_NC_003356: hypothetical protein; NCTC13684_02670; phage(gi18249870)3.22e-54Showinfo_outline
12complement(2699371..2700198)PHAGE_Entero_phiP27_NC_003356: putative serine protease; NCTC13684_02671; phage(gi18249869)3.53e-167Showinfo_outline
13complement(2700195..2700809)PHAGE_Salmon_Fels_1_NC_010391: hypothetical protein; NCTC13684_02672; phage(gi169257164)3.54e-55Showinfo_outline
14complement(2700806..2701024)Uncharacterised protein; NCTC13684_026730.0Showinfo_outline
15complement(2700996..2701208)PHAGE_Entero_phiP27_NC_003356: hypothetical protein; NCTC13684_02674; phage(gi18249871)1.30e-15Showinfo_outline
16complement(2701201..2701548)PHAGE_Salmon_Fels_1_NC_010391: hypothetical protein; NCTC13684_02675; phage(gi169257166)5.97e-07Showinfo_outline
17complement(2701529..2701732)PHAGE_Salmon_Fels_1_NC_010391: hypothetical protein; NCTC13684_02676; phage(gi169257167)1.06e-07Showinfo_outline
18complement(2701769..2701891)Uncharacterised protein; NCTC13684_026770.0Showinfo_outline
19complement(2701878..2702339)PHAGE_Strept_phiNJ2_NC_019418: hypothetical protein; NCTC13684_02678; phage(gi414090251)7.53e-23Showinfo_outline
20complement(2702433..2702825)Uncharacterised protein; NCTC13684_026790.0Showinfo_outline
21complement(2702822..2703028)Uncharacterised protein; NCTC13684_026800.0Showinfo_outline
22complement(2703025..2703477)PHAGE_Entero_phiP27_NC_003356: hypothetical protein; NCTC13684_02681; phage(gi18249874)1.12e-11Showinfo_outline
23complement(2703566..2703979)PHAGE_Entero_mEp235_NC_019708: prophage repressor; NCTC13684_02682; phage(gi428781850)5.21e-12Showinfo_outline
242704279..2705142PHAGE_Entero_phiP27_NC_003356: hypothetical protein; NCTC13684_02683; phage(gi18249879)2.91e-69Showinfo_outline
252705692..2706522PHAGE_Salmon_ST64B_NC_004313: putative replication protein; NCTC13684_02684; phage(gi23505486)1.48e-126Showinfo_outline
262706534..2707412PHAGE_Entero_phiP27_NC_003356: putative replication protein DnaC; NCTC13684_02685; phage(gi18249882)2.36e-111Showinfo_outline
272707409..2708788PHAGE_Entero_phiP27_NC_003356: putative helicase; NCTC13684_02686; phage(gi18249883)0.0Showinfo_outline
282708775..2709143PHAGE_Escher_HK639_NC_016158: Rus Holliday junction resolvase; NCTC13684_02687; phage(gi356870665)2.61e-49Showinfo_outline
292709216..2709617PHAGE_Entero_phiP27_NC_003356: putative antitermination protein Q; NCTC13684_02688; phage(gi18249885)6.17e-32Showinfo_outline
30complement(2709883..2710341)PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; NCTC13684_02689; phage(gi557307562)3.30e-18Showinfo_outline
312710564..2710812PHAGE_Entero_phi80_NC_021190: holin; NCTC13684_02690; phage(gi824479635)7.59e-09Showinfo_outline
322710815..2711345PHAGE_Escher_TL_2011c_NC_019442: lysozyme; NCTC13684_02691; phage(gi418487070)4.31e-102Showinfo_outline
332711550..2711873PHAGE_Entero_SfV_NC_003444: putative Rz1 lytic protein; NCTC13684_02692; phage(gi19549039)3.13e-47Showinfo_outline
342711910..2712293PHAGE_Klebsi_phiKO2_NC_005857: Gp63; NCTC13684_02693; phage(gi46402149)6.31e-85Showinfo_outline
352712358..2712603PHAGE_Entero_ST104_NC_005841: hypothetical protein; NCTC13684_02694; phage(gi46358693)3.92e-11Showinfo_outline
362713625..2714122PHAGE_Entero_mEp235_NC_019708: terminase small subunit; NCTC13684_02695; phage(gi428781811)2.07e-82Showinfo_outline
372714126..2715877PHAGE_Entero_mEp235_NC_019708: terminase large subunit; NCTC13684_02696; phage(gi428781812)0.0Showinfo_outline
382715874..2716035membrane protein; NCTC13684_026970.0Showinfo_outline
392716025..2717251PHAGE_Entero_SfV_NC_003444: portal protein; NCTC13684_02698; phage(gi19548993)0.0Showinfo_outline
402717244..2717843PHAGE_Entero_SfV_NC_003444: capsid protease; NCTC13684_02699; phage(gi19548994)1.57e-119Showinfo_outline
412717853..2719091PHAGE_Entero_SfV_NC_003444: capsid; NCTC13684_02700; phage(gi19548995)0.0Showinfo_outline
422719169..2719486PHAGE_Shigel_SfII_NC_021857: head-tail connector protein; NCTC13684_02701; phage(gi526244642)9.25e-26Showinfo_outline
432719495..2719833PHAGE_Entero_mEp234_NC_019715: head-tail connector II; NCTC13684_02702; phage(gi428782261)1.28e-49Showinfo_outline
442719830..2720279PHAGE_Entero_HK97_NC_002167: Gp10; NCTC13684_02703; phage(gi9634169)4.62e-88Showinfo_outline
452720276..2720623PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC13684_02704; phage(gi428782673)2.48e-43Showinfo_outline
46complement(2720695..2721663)PROPHAGE_Escher_CFT073: transposase; NCTC13684_02705; phage(gi26248352)7.88e-10Showinfo_outline
472721846..2722550PHAGE_Entero_mEp234_NC_019715: major tail subunit; NCTC13684_02706; phage(gi428782264)7.15e-111Showinfo_outline
482722620..2722985PHAGE_Escher_HK75_NC_016160: tail assembly chaperone; NCTC13684_02707; phage(gi356870688)1.03e-39Showinfo_outline
492722988..2723293PHAGE_Entero_HK106_NC_019768: tail protein; NCTC13684_02708; phage(gi428783291)2.64e-40Showinfo_outline
502723693..2727274PHAGE_Entero_HK544_NC_019767: tail length tape measure protein; NCTC13684_02709; phage(gi428783229)0.0Showinfo_outline
512727295..2727768PHAGE_Pseudo_PAJU2_NC_011373: hypothetical protein; NCTC13684_02710; phage(gi209552438)5.63e-46Showinfo_outline
522727755..2728231PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; NCTC13684_02711; phage(gi985757717)4.88e-37Showinfo_outline
532728244..2728624PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_030909: hypothetical protein; NCTC13684_02712; phage(gi100020)8.87e-22Showinfo_outline
542728621..2731698PHAGE_Pseudo_PS_1_NC_029066: tail protein; NCTC13684_02713; phage(gi985757719)7.50e-75Showinfo_outline
552731774..2733663PHAGE_Salmon_epsilon15_NC_004775: tail fiber; NCTC13684_02714; phage(gi30387399)1.68e-57Showinfo_outline
562733663..2734472Uncharacterised protein; NCTC13684_027150.0Showinfo_outline
57complement(2734570..2737725)PHAGE_Staphy_EW_NC_007056: ORF002; NCTC13684_02716; phage(gi66395809)1.21e-26Showinfo_outline
582746170..2746181attR0.0Showinfo_outline

Region 4, total 6 CDS

#CDS PositionBLAST HitE-ValueSequence
13276844..3277512PHAGE_Synech_S_CAM9_NC_031922: baseplate wedge subunit and tail pin; NCTC13684_03253; phage(gi100182)2.73e-06Showinfo_outline
23277662..3278423PHAGE_Prochl_P_TIM68_NC_028955: hypothetical protein; NCTC13684_03254; phage(gi971760361)6.87e-06Showinfo_outline
33278515..3279105PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; NCTC13684_03255; phage(gi100017)6.44e-08Showinfo_outline
43279335..3279610PHAGE_Entero_P1_NC_005856: InsA; NCTC13684_03256; phage(gi46401643)1.87e-59Showinfo_outline
53279655..3280032PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC13684_03257; phage(gi557307573)1.57e-81Showinfo_outline
6complement(3280026..3281114)PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; NCTC13684_03258; phage(gi371496158)1.38e-34Showinfo_outline

Region 5, total 59 CDS

#CDS PositionBLAST HitE-ValueSequence
13636058..3636122attL0.0Showinfo_outline
2complement(3641781..3643829)PHAGE_Vibrio_VvAW1_NC_020488: hypothetical protein; NCTC13684_03613; phage(gi460042928)5.72e-12Showinfo_outline
3complement(3643907..3646984)PHAGE_Pseudo_PS_1_NC_029066: tail protein; NCTC13684_03614; phage(gi985757719)2.56e-74Showinfo_outline
4complement(3646981..3647361)PHAGE_Pseudo_phi297_NC_016762: hypothetical protein; NCTC13684_03615; phage(gi374531303)6.68e-21Showinfo_outline
5complement(3647374..3647850)PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; NCTC13684_03616; phage(gi985757717)4.34e-37Showinfo_outline
6complement(3647837..3648310)PHAGE_Pseudo_PAJU2_NC_011373: hypothetical protein; NCTC13684_03617; phage(gi209552438)4.95e-46Showinfo_outline
7complement(3648331..3651936)PHAGE_Entero_HK544_NC_019767: tail length tape measure protein; NCTC13684_03618; phage(gi428783229)0.0Showinfo_outline
8complement(3652563..3652868)PHAGE_Entero_HK106_NC_019768: tail protein; NCTC13684_03619; phage(gi428783291)2.83e-38Showinfo_outline
9complement(3652871..3653275)PHAGE_Escher_HK75_NC_016160: tail assembly chaperone; NCTC13684_03620; phage(gi356870688)6.23e-46Showinfo_outline
10complement(3653306..3654010)PHAGE_Entero_mEp234_NC_019715: major tail subunit; NCTC13684_03621; phage(gi428782264)3.58e-109Showinfo_outline
113654193..3655044transposase-like protein; NCTC13684_036220.0Showinfo_outline
12complement(3655054..3655758)PHAGE_Entero_HK022_NC_002166: tail length tape measure protein; NCTC13684_03623; phage(gi9634134)3.29e-100Showinfo_outline
13complement(3656336..3656599)PHAGE_Entero_HK022_NC_002166: lambda gpT analog; NCTC13684_03624; phage(gi9634133)4.58e-28Showinfo_outline
14complement(3656632..3656985)PHAGE_Entero_HK022_NC_002166: lambda gpG analog; NCTC13684_03625; phage(gi9634132)2.62e-47Showinfo_outline
15complement(3657029..3657520)PHAGE_Entero_HK022_NC_002166: major tail subunit; NCTC13684_03626; phage(gi9634131)6.09e-80Showinfo_outline
16complement(3657577..3657942)PHAGE_Entero_HK022_NC_002166: gp11; NCTC13684_03627; phage(gi9634130)2.89e-63Showinfo_outline
17complement(3657939..3658478)PHAGE_Entero_HK022_NC_002166: gp10; NCTC13684_03628; phage(gi9634129)1.18e-103Showinfo_outline
18complement(3658471..3658803)PHAGE_Entero_HK022_NC_002166: gp9; NCTC13684_03629; phage(gi9634128)9.74e-68Showinfo_outline
19complement(3658805..3659002)PHAGE_Entero_HK022_NC_002166: gp8; NCTC13684_03630; phage(gi9634127)9.91e-31Showinfo_outline
20complement(3659063..3659389)PHAGE_Entero_mEp235_NC_019708: head-tail connector II; NCTC13684_03631; phage(gi428781817)7.58e-14Showinfo_outline
21complement(3659616..3660779)PHAGE_Entero_HK022_NC_002166: major capsid subunit precursor; NCTC13684_03632; phage(gi9634124)0.0Showinfo_outline
22complement(3660791..3661459)PHAGE_Entero_HK022_NC_002166: head maturation protease; NCTC13684_03633; phage(gi9634123)5.19e-110Showinfo_outline
23complement(3661477..3662754)PHAGE_Entero_HK022_NC_002166: head portal protein; NCTC13684_03634; phage(gi9634122)0.0Showinfo_outline
24complement(3662757..3664289)PHAGE_Pseudo_PAJU2_NC_011373: putative terminase; NCTC13684_03635; phage(gi209552421)0.0Showinfo_outline
25complement(3664299..3664733)PHAGE_Pseudo_PAJU2_NC_011373: hypothetical protein; NCTC13684_03636; phage(gi209552420)7.67e-34Showinfo_outline
26complement(3664855..3665064)PHAGE_Escher_HK75_NC_016160: hypothetical protein; NCTC13684_03637; phage(gi356870735)6.68e-11Showinfo_outline
27complement(3665077..3665367)PHAGE_Rhizob_16_3_NC_011103: holin; NCTC13684_03638; phage(gi195546640)7.39e-25Showinfo_outline
28complement(3665439..3665645)Uncharacterised protein; NCTC13684_036390.0Showinfo_outline
29complement(3665717..3665962)PHAGE_Entero_ST104_NC_005841: hypothetical protein; NCTC13684_03640; phage(gi46358693)3.92e-11Showinfo_outline
30complement(3666366..3666560)PHAGE_Escher_vB_EcoS_FFH1_NC_024139: hypothetical protein; NCTC13684_03641; phage(gi640884327)1.02e-24Showinfo_outline
31complement(3666633..3666854)DNA gyrase subunit beta; NCTC13684_036420.0Showinfo_outline
32complement(3666872..3667036)Uncharacterised protein; NCTC13684_036430.0Showinfo_outline
33complement(3667308..3667601)PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC13684_03644; phage(gi356870672)4.17e-43Showinfo_outline
34complement(3667743..3668018)PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC13684_03645; phage(gi428782715)8.16e-35Showinfo_outline
35complement(3668015..3668365)PHAGE_Stenot_vB_SmaS_DLP_2_NC_029019: holin; NCTC13684_03646; phage(gi971766266)1.46e-08Showinfo_outline
36complement(3668362..3668901)PHAGE_Erwini_vB_EamP_S6_NC_019514: endolysin; NCTC13684_03647; phage(gi422935930)1.44e-79Showinfo_outline
37complement(3668898..3669209)PHAGE_Salmon_ST64T_NC_004348: holin protein; NCTC13684_03648; phage(gi24371577)7.45e-48Showinfo_outline
38complement(3669848..3670426)PHAGE_Entero_HK629_NC_019711: late gene regulator Q; NCTC13684_03650; phage(gi428782072)1.13e-05Showinfo_outline
39complement(3670440..3671096)PHAGE_Salmon_118970_sal3_NC_031940: site-specific RNA endonuclease; NCTC13684_03651; phage(gi100127)5.26e-111Showinfo_outline
40complement(3671056..3671349)PHAGE_Entero_cdtI_NC_009514: hypothetical protein; NCTC13684_03652; phage(gi148609433)3.36e-32Showinfo_outline
41complement(3671434..3671811)PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; NCTC13684_03653; phage(gi100062)4.39e-65Showinfo_outline
42complement(3671821..3672630)PHAGE_Salmon_118970_sal3_NC_031940: prohead core protein protease; NCTC13684_03654; phage(gi100061)2.89e-141Showinfo_outline
43complement(3672627..3673517)PHAGE_Shigel_SfII_NC_021857: O protein family protein; NCTC13684_03655; phage(gi526244675)3.75e-156Showinfo_outline
44complement(3673924..3674391)PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC13684_03656; phage(gi428782704)1.55e-90Showinfo_outline
45complement(3674414..3674884)PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC13684_03657; phage(gi428782703)2.85e-13Showinfo_outline
46complement(3674919..3675116)PHAGE_Entero_mEp390_NC_019721: prophage anti-repressor; NCTC13684_03658; phage(gi428782702)5.82e-37Showinfo_outline
473675215..3675871PHAGE_Entero_mEp390_NC_019721: prophage repressor; NCTC13684_03659; phage(gi428782701)1.21e-139Showinfo_outline
483676610..3677527PHAGE_Vibrio_X29_NC_024369: DNA recombination-dependent growth factor C; NCTC13684_03660; phage(gi658311187)6.75e-14Showinfo_outline
493677617..3677916PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC13684_03661; phage(gi428782699)1.10e-19Showinfo_outline
503677916..3678701PHAGE_Burkho_KS9_NC_013055: chromosome partitioning protein gp35; NCTC13684_03662; phage(gi255033718)3.25e-80Showinfo_outline
513678698..3678832Uncharacterised protein; NCTC13684_036630.0Showinfo_outline
523679335..3680162Uncharacterised protein; NCTC13684_036640.0Showinfo_outline
533680205..3680432PHAGE_Salmon_ST64B_NC_004313: hypothetical protein; NCTC13684_03665; phage(gi23505473)6.79e-40Showinfo_outline
543680434..3681426PHAGE_Salmon_ST64B_NC_004313: Integrase protein; NCTC13684_03666; phage(gi23505472)0.0Showinfo_outline
553681537..3681601attR0.0Showinfo_outline
56complement(3681539..3681628)tRNA0.0Showinfo_outline
573681722..3682519inner membrane protein; NCTC13684_036680.0Showinfo_outline
583682620..3682695tRNA0.0Showinfo_outline
593682857..3684113PROPHAGE_Escher_CFT073: prophage P4 integrase; NCTC13684_03670; phage(gi26248270)0.0Showinfo_outline

Region 6, total 73 CDS

#CDS PositionBLAST HitE-ValueSequence
14256978..4256989attL0.0Showinfo_outline
24271748..4272041PHAGE_Entero_BP_4795_NC_004813: putative damage-inducible protein DinI; NCTC13684_04224; phage(gi157166070)3.82e-08Showinfo_outline
3complement(4272264..4272548)PHAGE_Entero_HK225_NC_019717: hypothetical protein; NCTC13684_04225; phage(gi428782404)1.65e-19Showinfo_outline
4complement(4272895..4275429)PHAGE_Staphy_EW_NC_007056: ORF002; NCTC13684_04226; phage(gi66395809)4.57e-43Showinfo_outline
5complement(4275516..4277993)PHAGE_Cronob_ENT47670_NC_019927: putative tail protein; NCTC13684_04227; phage(gi431810495)0.0Showinfo_outline
6complement(4277980..4278375)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC13684_04228; phage(gi431810526)9.38e-46Showinfo_outline
7complement(4278372..4278842)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC13684_04229; phage(gi431810518)9.66e-35Showinfo_outline
8complement(4278842..4279318)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC13684_04230; phage(gi431810519)3.20e-48Showinfo_outline
94279432..4279698Domain of uncharacterised function (DUF1883); NCTC13684_042310.0Showinfo_outline
10complement(4279675..4279854)Uncharacterised protein; NCTC13684_042320.0Showinfo_outline
11complement(4279895..4283413)PHAGE_Vibrio_pYD38_A_NC_021534: tail length tape measure protein; NCTC13684_04233; phage(gi514051037)0.0Showinfo_outline
12complement(4283480..4284508)Uncharacterised protein; NCTC13684_042340.0Showinfo_outline
13complement(4284595..4284870)Uncharacterised protein; NCTC13684_042350.0Showinfo_outline
14complement(4284948..4285190)Predicted membrane protein; NCTC13684_042360.0Showinfo_outline
15complement(4285393..4285587)Uncharacterised protein; NCTC13684_042370.0Showinfo_outline
16complement(4285584..4286291)PHAGE_Shigel_POCJ13_NC_025434: Rha protein; NCTC13684_04238; phage(gi725949745)2.15e-97Showinfo_outline
17complement(4286469..4287146)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC13684_04239; phage(gi431810508)1.40e-97Showinfo_outline
18complement(4287199..4287846)PHAGE_Cronob_ENT47670_NC_019927: major tail subunit; NCTC13684_04240; phage(gi431810520)1.47e-30Showinfo_outline
19complement(4288020..4288412)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC13684_04241; phage(gi431810530)1.78e-43Showinfo_outline
20complement(4288409..4288834)PHAGE_Vibrio_pYD38_A_NC_021534: hypothetical protein; NCTC13684_04242; phage(gi514050969)4.88e-39Showinfo_outline
21complement(4288837..4289199)PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: hypothetical protein; NCTC13684_04243; phage(gi971749596)6.32e-27Showinfo_outline
22complement(4289520..4289693)PHAGE_Entero_ES18_NC_006949: gp12; NCTC13684_04244; phage(gi62362225)6.22e-16Showinfo_outline
23complement(4289693..4290073)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC13684_04245; phage(gi431810531)2.23e-40Showinfo_outline
24complement(4290076..4290396)Uncharacterised protein; NCTC13684_042460.0Showinfo_outline
25complement(4290429..4291484)PHAGE_Salmon_II_E1_NC_010495: putative coat protein; NCTC13684_04247; phage(gi170676293)2.10e-129Showinfo_outline
26complement(4291481..4291942)PHAGE_Salmon_II_E1_NC_010495: putative capsid decoration protein; NCTC13684_04248; phage(gi170676292)1.38e-39Showinfo_outline
27complement(4291942..4293297)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC13684_04249; phage(gi431810499)3.36e-162Showinfo_outline
28complement(4293527..4294534)PHAGE_Cronob_ENT47670_NC_019927: phage head morphogenesis; NCTC13684_04250; phage(gi431810507)4.10e-153Showinfo_outline
29complement(4294705..4295931)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC13684_04251; phage(gi431810500)2.39e-153Showinfo_outline
30complement(4295944..4297416)PHAGE_Cronob_phiES15_NC_018454: terminase large subunit; NCTC13684_04252; phage(gi401817592)0.0Showinfo_outline
31complement(4297416..4297931)PHAGE_Pseudo_PS_1_NC_029066: terminase small subunit; NCTC13684_04253; phage(gi985757693)2.12e-63Showinfo_outline
32complement(4297999..4298136)Uncharacterised protein; NCTC13684_042540.0Showinfo_outline
33complement(4298139..4298606)PHAGE_Salmon_HK620_NC_002730: endopeptidase; NCTC13684_04255; phage(gi13559860)8.86e-79Showinfo_outline
34complement(4298603..4299106)PHAGE_Salmon_vB_SemP_Emek_NC_018275: lysin; NCTC13684_04256; phage(gi399498856)2.46e-95Showinfo_outline
35complement(4299109..4299423)PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; NCTC13684_04257; phage(gi423262443)2.10e-62Showinfo_outline
36complement(4299694..4299770)tRNA0.0Showinfo_outline
37complement(4299776..4299851)tRNA0.0Showinfo_outline
38complement(4299857..4299932)tRNA0.0Showinfo_outline
39complement(4299939..4300013)tRNA0.0Showinfo_outline
40complement(4300433..4301116)PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage antiterminator protein Q; NCTC13684_04262; phage(gi169257244)2.91e-75Showinfo_outline
41complement(4301113..4301253)PHAGE_Phage_Gifsy_1_NC_010392: conserved hypothetical bacteriophage protein; NCTC13684_04263; phage(gi169257245)7.08e-11Showinfo_outline
42complement(4301250..4301888)PHAGE_Salmon_SPN3UB_NC_019545: NinG; NCTC13684_04264; phage(gi423262439)1.78e-110Showinfo_outline
43complement(4301881..4302555)PHAGE_Entero_phi80_NC_021190: phage protein phosphatase; NCTC13684_04265; phage(gi824479631)5.76e-118Showinfo_outline
44complement(4302552..4302725)PHAGE_Escher_HK639_NC_016158: NinE; NCTC13684_04266; phage(gi356870663)3.52e-15Showinfo_outline
45complement(4302725..4303321)PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; NCTC13684_04267; phage(gi423262437)1.97e-62Showinfo_outline
46complement(4303477..4303599)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; NCTC13684_04268; phage(gi100090)1.24e-08Showinfo_outline
47complement(4303599..4304096)PHAGE_Klebsi_vB_KpnM_KB57_NC_028659: hypothetical protein; NCTC13684_04269; phage(gi966203508)4.05e-24Showinfo_outline
48complement(4304093..4304527)PHAGE_Vibrio_pYD38_A_NC_021534: hypothetical protein; NCTC13684_04270; phage(gi514051012)2.02e-36Showinfo_outline
49complement(4304524..4304739)PHAGE_Vibrio_pYD38_A_NC_021534: hypothetical protein; NCTC13684_04271; phage(gi514051013)1.11e-46Showinfo_outline
50complement(4304739..4305350)PHAGE_Entero_UAB_Phi20_NC_031019: hypothetical protein; NCTC13684_04272; phage(gi100057)1.12e-34Showinfo_outline
51complement(4305343..4305543)PHAGE_Salmon_g341c_NC_013059: mosaic protein; NCTC13684_04273; phage(gi255252707)2.58e-12Showinfo_outline
52complement(4305540..4305992)PHAGE_Salmon_ST160_NC_014900: hypothetical protein; NCTC13684_04274; phage(gi318065911)4.74e-33Showinfo_outline
53complement(4305989..4306303)PHAGE_Entero_SfI_NC_027339: Ren protein; NCTC13684_04275; phage(gi849250273)2.95e-27Showinfo_outline
54complement(4306293..4307666)PHAGE_Erwini_phiEt88_NC_015295: Replicative DNA helicase; NCTC13684_04276; phage(gi327198610)0.0Showinfo_outline
55complement(4307663..4308748)PHAGE_Erwini_phiEt88_NC_015295: phage replication protein O; NCTC13684_04277; phage(gi327198609)3.21e-111Showinfo_outline
56complement(4308741..4308887)Protein of uncharacterised function (DUF2740); NCTC13684_042780.0Showinfo_outline
57complement(4308973..4309194)PHAGE_Entero_mEp213_NC_019720: CII protein; NCTC13684_04279; phage(gi428782643)8.49e-10Showinfo_outline
58complement(4309235..4309468)PHAGE_Escher_HK639_NC_016158: cro; NCTC13684_04280; phage(gi356870651)1.74e-25Showinfo_outline
594309777..4310262PHAGE_Salmon_ST160_NC_014900: C2; NCTC13684_04281; phage(gi318065925)3.96e-93Showinfo_outline
60complement(4310318..4310521)Uncharacterised protein; NCTC13684_042820.0Showinfo_outline
614310715..4310984Uncharacterised protein; NCTC13684_042830.0Showinfo_outline
624311094..4311366PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; NCTC13684_04284; phage(gi985757670)2.32e-05Showinfo_outline
63complement(4311480..4311635)PHAGE_Salmon_118970_sal4_NC_030919: hypothetical protein; NCTC13684_04285; phage(gi100018)6.94e-11Showinfo_outline
644312108..4312266Uncharacterised protein; NCTC13684_042860.0Showinfo_outline
654312355..4312639PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC13684_04287; phage(gi356870640)1.56e-52Showinfo_outline
664312655..4313500PHAGE_Ralsto_RSK1_NC_022915: putative phage recombination protein; NCTC13684_04288; phage(gi560186064)4.62e-80Showinfo_outline
674313497..4314177PHAGE_Cronob_ENT47670_NC_019927: exonuclease; NCTC13684_04289; phage(gi431810511)5.13e-148Showinfo_outline
684314174..4314602PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC13684_04290; phage(gi356870637)3.08e-81Showinfo_outline
694314599..4315255PHAGE_Escher_HK639_NC_016158: adenine specific methyltransferase; NCTC13684_04291; phage(gi356870635)3.22e-142Showinfo_outline
704315252..4316217PHAGE_Salmon_epsilon15_NC_004775: cytosine methylase; NCTC13684_04292; phage(gi30387420)4.05e-177Showinfo_outline
714316434..4316649PHAGE_Stx2_vB_EcoP_24B_NC_027984: putative C4 zinc finger protein; NCTC13684_04293; phage(gi937456240)7.01e-20Showinfo_outline
724316863..4318026PHAGE_Escher_HK639_NC_016158: integrase; NCTC13684_04294; phage(gi356870629)0.0Showinfo_outline
734318100..4318111attR0.0Showinfo_outline

Region 7, total 21 CDS

#CDS PositionBLAST HitE-ValueSequence
15082877..5082893attL0.0Showinfo_outline
2complement(5092026..5092589)PHAGE_Mycoba_32HC_NC_023602: integrase; NCTC13684_05087; phage(gi589893371)8.78e-08Showinfo_outline
35092678..5092953PHAGE_Entero_P1_NC_005856: InsA; NCTC13684_05088; phage(gi46401643)1.23e-59Showinfo_outline
45092998..5093375PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC13684_05089; phage(gi557307573)1.57e-81Showinfo_outline
5complement(5093983..5096316)PHAGE_Entero_P4_NC_001609: DNA primase; NCTC13684_05090; phage(gi9627512)0.0Showinfo_outline
6complement(5096330..5096650)PHAGE_Entero_P4_NC_001609: hypothetical protein; NCTC13684_05091; phage(gi9627513)2.01e-65Showinfo_outline
7complement(5096647..5096874)Uncharacterised protein; NCTC13684_050920.0Showinfo_outline
8complement(5096871..5097065)PHAGE_Entero_P4_NC_001609: putative CI repressor; NCTC13684_05093; phage(gi9627516)1.30e-30Showinfo_outline
9complement(5097416..5097682)PHAGE_Entero_P4_NC_001609: transcriptional regulator; NCTC13684_05096; phage(gi9627517)3.20e-42Showinfo_outline
105098222..5098959PHAGE_Entero_P4_NC_001609: head size determination protein sid; NCTC13684_05097; phage(gi9627518)3.22e-97Showinfo_outline
115098956..5099201PHAGE_Entero_186_NC_001317: B protein; NCTC13684_05098; phage(gi9634083)4.77e-17Showinfo_outline
125099219..5099785PHAGE_Entero_P4_NC_001609: amber mutation-suppressing protein; NCTC13684_05099; phage(gi9627520)2.50e-77Showinfo_outline
135100398..5100676Uncharacterised protein; NCTC13684_051000.0Showinfo_outline
14complement(5100611..5100988)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC13684_05101; phage(gi557307573)1.57e-81Showinfo_outline
15complement(5101033..5101308)PHAGE_Entero_P1_NC_005856: InsA; NCTC13684_05102; phage(gi46401643)1.87e-59Showinfo_outline
165101398..5102204Uncharacterized protein conserved in bacteria (DUF2186); NCTC13684_051030.0Showinfo_outline
17complement(5102435..5102812)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC13684_05104; phage(gi557307573)1.57e-81Showinfo_outline
18complement(5102857..5103132)PHAGE_Entero_P1_NC_005856: InsA; NCTC13684_05105; phage(gi46401643)1.87e-59Showinfo_outline
195103544..5104215PHAGE_Pseudo_NP1_NC_031058: hypothetical protein; NCTC13684_05106; phage(gi100039)3.11e-21Showinfo_outline
20complement(5104256..5104621)PHAGE_Bacill_BCD7_NC_019515: 6-pyruvoyl tetrahydrobiopterin synthase; NCTC13684_05107; phage(gi422935983)2.75e-12Showinfo_outline
215109699..5109715attR0.0Showinfo_outline

Region 8, total 34 CDS

#CDS PositionBLAST HitE-ValueSequence
15397030..5397287PHAGE_Salmon_ST64B_NC_004313: hypothetical protein; NCTC13684_05404; phage(gi23505494)5.69e-30Showinfo_outline
2complement(5397178..5397636)PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; NCTC13684_05405; phage(gi557307562)3.30e-18Showinfo_outline
35397858..5398106PHAGE_Entero_phi80_NC_021190: holin; NCTC13684_05406; phage(gi824479635)7.59e-09Showinfo_outline
45398299..5398634PHAGE_Entero_mEp460_NC_019716: endolysin; NCTC13684_05407; phage(gi428782372)1.48e-64Showinfo_outline
55398839..5399162PHAGE_Entero_SfV_NC_003444: putative Rz1 lytic protein; NCTC13684_05408; phage(gi19549039)3.13e-47Showinfo_outline
65399199..5399582PHAGE_Klebsi_phiKO2_NC_005857: Gp63; NCTC13684_05409; phage(gi46402149)6.31e-85Showinfo_outline
75399647..5399892PHAGE_Entero_ST104_NC_005841: hypothetical protein; NCTC13684_05410; phage(gi46358693)3.92e-11Showinfo_outline
85400913..5401410PHAGE_Entero_mEp235_NC_019708: terminase small subunit; NCTC13684_05411; phage(gi428781811)2.07e-82Showinfo_outline
95401414..5402223PHAGE_Entero_mEp235_NC_019708: terminase large subunit; NCTC13684_05412; phage(gi428781812)1.51e-126Showinfo_outline
105402293..5402847PHAGE_Entero_mEp235_NC_019708: terminase large subunit; NCTC13684_05413; phage(gi428781812)1.82e-20Showinfo_outline
115402908..5403165PHAGE_Entero_mEp235_NC_019708: terminase large subunit; NCTC13684_05414; phage(gi428781812)1.93e-32Showinfo_outline
125403162..5403323membrane protein; NCTC13684_054150.0Showinfo_outline
135403416..5403661PHAGE_Entero_SfV_NC_003444: portal protein; NCTC13684_05416; phage(gi19548993)1.04e-39Showinfo_outline
145403703..5403870PHAGE_Entero_SfV_NC_003444: portal protein; NCTC13684_05417; phage(gi19548993)4.16e-19Showinfo_outline
155404038..5404538PHAGE_Entero_SfV_NC_003444: portal protein; NCTC13684_05418; phage(gi19548993)2.54e-109Showinfo_outline
165404531..5405130PHAGE_Entero_SfV_NC_003444: capsid protease; NCTC13684_05419; phage(gi19548994)1.57e-119Showinfo_outline
175405140..5405571PHAGE_Entero_SfV_NC_003444: capsid; NCTC13684_05420; phage(gi19548995)3.75e-49Showinfo_outline
185405595..5406011PHAGE_Entero_SfV_NC_003444: capsid; NCTC13684_05421; phage(gi19548995)1.90e-57Showinfo_outline
195406022..5406378PHAGE_Entero_SfV_NC_003444: capsid; NCTC13684_05422; phage(gi19548995)2.90e-61Showinfo_outline
205406456..5406629Uncharacterised protein; NCTC13684_054230.0Showinfo_outline
215406781..5407122PHAGE_Entero_mEp234_NC_019715: head-tail connector II; NCTC13684_05424; phage(gi428782261)5.90e-49Showinfo_outline
225407115..5407282PHAGE_Entero_mEp234_NC_019715: hypothetical protein; NCTC13684_05425; phage(gi428782262)6.31e-21Showinfo_outline
235407560..5407835PHAGE_Entero_mEp234_NC_019715: hypothetical protein; NCTC13684_05426; phage(gi428782263)5.63e-31Showinfo_outline
24complement(5408066..5408944)transposase-like protein; NCTC13684_054270.0Showinfo_outline
255409127..5409534PHAGE_Entero_mEp234_NC_019715: major tail subunit; NCTC13684_05428; phage(gi428782264)1.24e-61Showinfo_outline
265409630..5409794PHAGE_Entero_mEp234_NC_019715: major tail subunit; NCTC13684_05429; phage(gi428782264)5.01e-06Showinfo_outline
275410090..5410263PHAGE_Entero_HK446_NC_019714: tail assembly chaperone; NCTC13684_05430; phage(gi428782205)6.58e-21Showinfo_outline
285410266..5410571PHAGE_Entero_mEp234_NC_019715: tail assembly chaperone; NCTC13684_05431; phage(gi428782266)1.72e-37Showinfo_outline
295410971..5414552PHAGE_Entero_HK544_NC_019767: tail length tape measure protein; NCTC13684_05432; phage(gi428783229)0.0Showinfo_outline
305414573..5415046PHAGE_Pseudo_PAJU2_NC_011373: hypothetical protein; NCTC13684_05433; phage(gi209552438)5.63e-46Showinfo_outline
315415033..5415509PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; NCTC13684_05434; phage(gi985757717)4.88e-37Showinfo_outline
325415522..5415902PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_030909: hypothetical protein; NCTC13684_05435; phage(gi100020)8.87e-22Showinfo_outline
335415899..5418976PHAGE_Pseudo_PS_1_NC_029066: tail protein; NCTC13684_05436; phage(gi985757719)7.50e-75Showinfo_outline
345419052..5422207PHAGE_Staphy_EW_NC_007056: ORF002; NCTC13684_05437; phage(gi66395809)1.21e-26Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 5433803 bps
Phages: 8
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Click on a sequence to see details.
Viewer Options
Click on a sequence to see details.
Viewer Options
Click on a sequence to see details.
Viewer Options
Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

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