Submission Results

Sequence Name: Not Available

GenBank Accession Number: UGKN00000000.1

GenInfo (GI) Number: 0000000000

Download Results: UGKN00000000.1.PHASTER.zip

gi|00000000|ref|UGKN00000000.1| Klebsiella pneumoniae strain NCTC13685, whole genome shotgun 5483705, gc%: 56.90%

Download summary as .txt file: summary.txt file_download

Total: 8 prophage regions have been identified, of which 6 regions are intact, 1 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
123.4Kbquestionable70161391082-1414559 info_outlinePHAGE_Entero_P4_NC_001609(5)49.63%Show info_outline
234.5Kbintact150451519278-1553854 info_outlinePHAGE_Vibrio_12B12_NC_021070(29)53.36%Show info_outline
360.2Kbintact120622318925-2379186 info_outlinePHAGE_Pseudo_B3_NC_006548(18)55.70%Show info_outline
450.2Kbintact150444257714-4308007 info_outlinePHAGE_Entero_mEp460_NC_019716(35)50.64%Show info_outline
539.7Kbintact150464871456-4911183 info_outlinePHAGE_Entero_WPhi_NC_005056(17)53.01%Show info_outline
626.1Kbintact110215182678-5208848 info_outlinePHAGE_Entero_P1_NC_005856(5)47.79%Show info_outline
716.6Kbintact100235356744-5373360 info_outlinePHAGE_Entero_P1_NC_005856(2)52.07%Show info_outline
86.8Kbincomplete5085386246-5393110 info_outlinePHAGE_Cronob_ENT39118_NC_019934(2)56.01%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|UGKN00000000.1| Klebsiella pneumoniae strain NCTC13685, whole genome shotgun 5483705, gc%: 56.90%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 18 CDS

#CDS PositionBLAST HitE-ValueSequence
11391082..1392431PHAGE_Entero_P4_NC_001609: integrase; NCTC13685_01329; phage(gi9627511)0.0Showinfo_outline
21392462..1392812Uncharacterised protein; NCTC13685_013300.0Showinfo_outline
31392812..1393099Uncharacterised protein; NCTC13685_013310.0Showinfo_outline
41393470..1393700PHAGE_Stenot_S1_NC_011589: putative repressor protein; NCTC13685_01332; phage(gi213163928)8.05e-09Showinfo_outline
51393666..1394346PHAGE_Entero_P4_NC_001609: putative CI repressor; NCTC13685_01333; phage(gi9627516)5.77e-08Showinfo_outline
61394339..1394698Uncharacterised protein; NCTC13685_013340.0Showinfo_outline
71394730..1395014Uncharacterised protein; NCTC13685_013350.0Showinfo_outline
81395011..1395394PHAGE_Entero_P4_NC_001609: hypothetical protein; NCTC13685_01336; phage(gi9627513)5.16e-12Showinfo_outline
91395391..1398063PHAGE_Entero_P4_NC_001609: DNA primase; NCTC13685_01337; phage(gi9627512)6.05e-43Showinfo_outline
101398464..1399225PHAGE_Entero_P4_NC_001609: head size determination protein sid; NCTC13685_01338; phage(gi9627518)3.80e-08Showinfo_outline
111399225..1399497PHAGE_Entero_PsP3_NC_005340: Pag; NCTC13685_01339; phage(gi41057379)1.50e-11Showinfo_outline
121399874..1400185PHAGE_Salmon_Fels_2_NC_010463: P2 gpE-like tail protein; NCTC13685_01340; phage(gi169936023)1.84e-40Showinfo_outline
131400185..1400319PHAGE_Salmon_RE_2010_NC_019488: tail protein E'; NCTC13685_01341; phage(gi418489723)2.84e-18Showinfo_outline
141400312..1402945PHAGE_Shigel_SfII_NC_021857: tail protein; NCTC13685_01342; phage(gi526244650)4.12e-108Showinfo_outline
151403287..1403298attL0.0Showinfo_outline
161403373..1404638PROPHAGE_Escher_CFT073: prophage P4 integrase; NCTC13685_01343; phage(gi26251024)0.0Showinfo_outline
171404873..1408385PHAGE_Entero_EFC_1_NC_025453: DEAD/DEAH box helicase; NCTC13685_01344; phage(gi725950530)2.02e-17Showinfo_outline
181414559..1414570attR0.0Showinfo_outline

Region 2, total 45 CDS

#CDS PositionBLAST HitE-ValueSequence
11519278..1519502PHAGE_Vibrio_12B12_NC_021070: DNA-binding protein Ner; NCTC13685_01456; phage(gi481019194)4.04e-20Showinfo_outline
21519505..1521598PROPHAGE_Escher_Sakai: phage transposase; NCTC13685_01457; phage(gi15834199)0.0Showinfo_outline
31521635..1522582PHAGE_Vibrio_12B12_NC_021070: DNA transposition protein; NCTC13685_01458; phage(gi481019192)2.19e-105Showinfo_outline
41522587..1522826PHAGE_Escher_D108_NC_013594: Kil; NCTC13685_01459; phage(gi281199649)3.57e-19Showinfo_outline
51522829..1523086PHAGE_Pseudo_JBD93_NC_030918: hypothetical protein; NCTC13685_01460; phage(gi100013)1.85e-22Showinfo_outline
61523096..1523383PHAGE_Escher_D108_NC_013594: hypothetical protein; NCTC13685_01461; phage(gi281199653)3.91e-25Showinfo_outline
71523399..1524016PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC13685_01462; phage(gi481019189)2.15e-86Showinfo_outline
81524097..1524594PHAGE_Cellul_phi10:1_NC_021802: nucleoside triphosphate pyrophosphohydrolase; NCTC13685_01463; phage(gi526178125)4.73e-09Showinfo_outline
91524591..1525145PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC13685_01464; phage(gi481019180)1.65e-26Showinfo_outline
101525142..1525534PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC13685_01465; phage(gi481019179)2.53e-21Showinfo_outline
111525540..1525860Uncharacterised protein; NCTC13685_014660.0Showinfo_outline
121525955..1526536PHAGE_Pantoe_LIMEzero_NC_015585: hypothetical protein; NCTC13685_01467; phage(gi338827197)4.49e-23Showinfo_outline
131526749..1527156Uncharacterised protein; NCTC13685_014680.0Showinfo_outline
141527144..1527749PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC13685_01469; phage(gi481019175)1.75e-35Showinfo_outline
151527746..1527976PHAGE_Vibrio_12B12_NC_021070: C4-type zinc finger protein; NCTC13685_01470; phage(gi481019174)2.78e-11Showinfo_outline
161527957..1528259PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC13685_01471; phage(gi481019173)5.20e-15Showinfo_outline
171528269..1528556PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC13685_01472; phage(gi481019172)4.01e-36Showinfo_outline
181528556..1528831Uncharacterised protein; NCTC13685_014730.0Showinfo_outline
191528828..1529406PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC13685_01474; phage(gi481019171)1.45e-71Showinfo_outline
201529406..1530992PHAGE_Vibrio_12B12_NC_021070: portal protein; NCTC13685_01475; phage(gi481019169)0.0Showinfo_outline
211530992..1532563PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC13685_01476; phage(gi481019168)0.0Showinfo_outline
221532556..1533395PHAGE_Vibrio_12B12_NC_021070: F protein; NCTC13685_01477; phage(gi481019167)8.75e-107Showinfo_outline
231533606..1534574PHAGE_Vibrio_12B12_NC_021070: I protein; NCTC13685_01478; phage(gi481019166)7.28e-94Showinfo_outline
241534577..1535488PHAGE_Vibrio_12B12_NC_021070: major head subunit; NCTC13685_01479; phage(gi481019165)1.27e-129Showinfo_outline
251535805..1536077Uncharacterised protein; NCTC13685_014800.0Showinfo_outline
261536078..1536518PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC13685_01481; phage(gi481019161)1.85e-45Showinfo_outline
271536518..1537060PHAGE_Vibrio_12B12_NC_021070: phage virion morphogenesis protein; NCTC13685_01482; phage(gi481019160)1.35e-80Showinfo_outline
281537057..1537665PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC13685_01483; phage(gi481019159)2.38e-45Showinfo_outline
291537662..1537850PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC13685_01484; phage(gi481019158)5.26e-05Showinfo_outline
301537852..1539330PHAGE_Vibrio_12B12_NC_021070: tail sheath protein; NCTC13685_01485; phage(gi481019157)0.0Showinfo_outline
311539340..1539693PHAGE_Vibrio_12B12_NC_021070: tail tube protein; NCTC13685_01486; phage(gi481019156)7.02e-23Showinfo_outline
321539697..1540080PHAGE_Vibrio_12B12_NC_021070: extracellular solute-binding protein family 7 protein; NCTC13685_01487; phage(gi481019155)2.92e-27Showinfo_outline
331540179..1541975PHAGE_Vibrio_12B12_NC_021070: phage tail tape measure protein; NCTC13685_01488; phage(gi481019154)8.68e-65Showinfo_outline
341541972..1543234PHAGE_Vibrio_12B12_NC_021070: DNA circulation protein; NCTC13685_01489; phage(gi481019153)3.59e-113Showinfo_outline
351543419..1544318PHAGE_Vibrio_12B12_NC_021070: P protein; NCTC13685_01490; phage(gi481019152)1.27e-95Showinfo_outline
361544309..1544848PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC13685_01491; phage(gi481019151)1.48e-44Showinfo_outline
371544845..1545294PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC13685_01492; phage(gi481019150)1.11e-33Showinfo_outline
381545284..1546357PHAGE_Vibrio_12B12_NC_021070: baseplate J-like protein; NCTC13685_01493; phage(gi481019149)2.90e-126Showinfo_outline
391546342..1546926PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC13685_01494; phage(gi481019148)5.03e-59Showinfo_outline
401546926..1547675PHAGE_Entero_T4_NC_000866: gp37 long tail fiber, distal subunit; NCTC13685_01495; phage(gi9632629)1.73e-41Showinfo_outline
411547675..1548562PHAGE_Entero_HK630_NC_019723: tail fiber assembly protein; NCTC13685_01496; phage(gi428782810)4.51e-33Showinfo_outline
421548575..1550425PHAGE_Entero_SfMu_NC_027382: tail fiber protein; NCTC13685_01497; phage(gi849255279)5.14e-17Showinfo_outline
431550425..1551285Uncharacterised protein; NCTC13685_014980.0Showinfo_outline
44complement(1551533..1552753)PROPHAGE_Escher_CFT073: transposase; NCTC13685_01499; phage(gi26249432)2.28e-60Showinfo_outline
451552847..1553854PHAGE_Bacill_SPbeta_NC_001884: IMPB/MUCB/SAMB family protein; NCTC13685_01500; phage(gi9630142)1.12e-17Showinfo_outline

Region 3, total 66 CDS

#CDS PositionBLAST HitE-ValueSequence
12318925..2318937attL0.0Showinfo_outline
22330333..2330596PHAGE_Cronob_vB_CsaM_GAP32_NC_019401: glutaredoxin; NCTC13685_02246; phage(gi414087106)3.94e-19Showinfo_outline
3complement(2330603..2330986)inner membrane protein; NCTC13685_022470.0Showinfo_outline
42331253..2332938TrkA, Potassium channel-family protein; NCTC13685_022480.0Showinfo_outline
52333073..2333086attL0.0Showinfo_outline
6complement(2333159..2333380)Uncharacterised protein; NCTC13685_022500.0Showinfo_outline
7complement(2333538..2333753)PHAGE_Salmon_Fels_2_NC_010463: P2 gpOgr-like protein (acttivation of late gene expression); NCTC13685_02251; phage(gi169936018)3.25e-29Showinfo_outline
8complement(2333821..2334090)PHAGE_Salmon_Fels_2_NC_010463: tail protein; NCTC13685_02252; phage(gi169936019)9.58e-45Showinfo_outline
9complement(2334451..2334903)PHAGE_Salmon_Fels_2_NC_010463: tail protein; NCTC13685_02253; phage(gi169936019)5.72e-90Showinfo_outline
10complement(2334900..2335385)PHAGE_Salmon_RE_2010_NC_019488: tail protein; NCTC13685_02254; phage(gi418489725)2.98e-106Showinfo_outline
112335555..2335944PHAGE_Salmon_RE_2010_NC_019488: capsid packaging protein; NCTC13685_02255; phage(gi418489696)1.74e-78Showinfo_outline
12complement(2335965..2336924)PHAGE_Thermu_OH2_NC_021784: SMF family protein; NCTC13685_02256; phage(gi526118339)2.99e-24Showinfo_outline
13complement(2336929..2337504)Uncharacterised protein; NCTC13685_022570.0Showinfo_outline
142338848..2339225PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC13685_02258; phage(gi557307573)1.94e-82Showinfo_outline
152339377..2340585PROPHAGE_Escher_CFT073: transposase; NCTC13685_02259; phage(gi26246249)0.0Showinfo_outline
16complement(2340622..2341086)Uncharacterised protein; NCTC13685_022600.0Showinfo_outline
17complement(2341254..2341631)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC13685_02261; phage(gi557307573)1.94e-82Showinfo_outline
18complement(2342186..2342374)PHAGE_Salmon_RE_2010_NC_019488: hypothetical protein; NCTC13685_02262; phage(gi418489693)1.01e-30Showinfo_outline
19complement(2342463..2343827)PHAGE_Pseudo_phi3_NC_030940: hypothetical protein; NCTC13685_02263; phage(gi100001)1.31e-33Showinfo_outline
20complement(2344663..2344893)PHAGE_Salmon_Fels_2_NC_010463: P2 gpA-like protein; NCTC13685_02265; phage(gi169936054)2.13e-41Showinfo_outline
21complement(2344945..2345307)PHAGE_Salmon_RE_2010_NC_019488: replication protein; NCTC13685_02266; phage(gi418489692)8.64e-69Showinfo_outline
222345321..2345926PHAGE_Erwini_ENT90_NC_019932: phage integrase family protein; NCTC13685_02267; phage(gi431810942)6.37e-62Showinfo_outline
232345933..2345946attR0.0Showinfo_outline
24complement(2346181..2346543)PHAGE_Pseudo_JBD25_NC_027992: hypothetical protein; NCTC13685_02268; phage(gi100001)2.03e-20Showinfo_outline
25complement(2346559..2346984)PHAGE_Burkho_BcepMu_NC_005882: gp02; NCTC13685_02269; phage(gi48696912)9.59e-32Showinfo_outline
26complement(2346971..2347294)PHAGE_Acinet_Bphi_B1251_NC_019541: hypothetical protein; NCTC13685_02270; phage(gi423262042)5.46e-12Showinfo_outline
27complement(2347404..2348126)PHAGE_Pseudo_JBD18_NC_027986: hypothetical protein; NCTC13685_02271; phage(gi100005)6.81e-29Showinfo_outline
28complement(2348110..2348403)PHAGE_Clostr_phiCTC2B_NC_030951: hypothetical protein; NCTC13685_02272; phage(gi100016)7.13e-08Showinfo_outline
29complement(2348394..2348600)Uncharacterised protein; NCTC13685_022730.0Showinfo_outline
30complement(2348597..2349121)PHAGE_Pseudo_JBD93_NC_030918: hypothetical protein; NCTC13685_02274; phage(gi100012)6.90e-67Showinfo_outline
31complement(2349137..2349352)Uncharacterised protein; NCTC13685_022750.0Showinfo_outline
32complement(2349356..2349652)Uncharacterised protein; NCTC13685_022760.0Showinfo_outline
33complement(2349680..2350843)PHAGE_Pseudo_JBD18_NC_027986: hypothetical protein; NCTC13685_02277; phage(gi100012)3.61e-119Showinfo_outline
34complement(2350852..2352624)PHAGE_Pseudo_JBD18_NC_027986: hypothetical protein; NCTC13685_02278; phage(gi100013)0.0Showinfo_outline
35complement(2352626..2353537)PHAGE_Pseudo_JBD25_NC_027992: hypothetical protein; NCTC13685_02279; phage(gi100015)4.14e-13Showinfo_outline
36complement(2353551..2353859)PHAGE_Pseudo_B3_NC_006548: hypothetical protein; NCTC13685_02280; phage(gi56692582)1.89e-36Showinfo_outline
37complement(2353863..2354087)Uncharacterised protein; NCTC13685_022810.0Showinfo_outline
38complement(2355061..2355828)PHAGE_Vibrio_VP882_NC_009016: DNA adenine methylase; NCTC13685_02282; phage(gi126010878)6.05e-131Showinfo_outline
392356039..2356536Uncharacterised protein; NCTC13685_022830.0Showinfo_outline
402356567..2356914Uncharacterised protein; NCTC13685_022840.0Showinfo_outline
412357013..2357381PHAGE_Pseudo_JBD25_NC_027992: hypothetical protein; NCTC13685_02285; phage(gi100024)6.09e-08Showinfo_outline
422357384..2357998PHAGE_Pseudo_JBD25_NC_027992: hypothetical protein; NCTC13685_02286; phage(gi100026)2.75e-81Showinfo_outline
432358259..2358537PHAGE_Pseudo_JBD93_NC_030918: hypothetical protein; NCTC13685_02287; phage(gi100026)2.78e-06Showinfo_outline
442358527..2358829Protein of uncharacterised function (DUF2730); NCTC13685_022880.0Showinfo_outline
452358841..2359137PHAGE_Pseudo_JBD25_NC_027992: hypothetical protein; NCTC13685_02289; phage(gi100030)1.20e-41Showinfo_outline
462359079..2359690PHAGE_Pseudo_JBD25_NC_027992: hypothetical protein; NCTC13685_02290; phage(gi100031)2.85e-65Showinfo_outline
472359690..2361369PHAGE_Pseudo_JBD18_NC_027986: hypothetical protein; NCTC13685_02291; phage(gi100029)3.44e-99Showinfo_outline
482361366..2362880PHAGE_Pseudo_JBD18_NC_027986: hypothetical protein; NCTC13685_02292; phage(gi100030)1.15e-180Showinfo_outline
492362870..2364087PHAGE_Pseudo_JBD25_NC_027992: hypothetical protein; NCTC13685_02293; phage(gi100034)1.86e-152Showinfo_outline
502364087..2364650PHAGE_Pseudo_JBD25_NC_027992: hypothetical protein; NCTC13685_02294; phage(gi100035)5.43e-60Showinfo_outline
512364887..2366032PHAGE_Pseudo_JBD18_NC_027986: hypothetical protein; NCTC13685_02295; phage(gi100033)1.17e-114Showinfo_outline
522366029..2366406PHAGE_Pseudo_JBD18_NC_027986: hypothetical protein; NCTC13685_02296; phage(gi100034)1.06e-26Showinfo_outline
532366425..2366437attR0.0Showinfo_outline
542366474..2367403PHAGE_Pseudo_JBD18_NC_027986: hypothetical protein; NCTC13685_02297; phage(gi100035)1.60e-161Showinfo_outline
552367415..2367939PHAGE_Pseudo_JBD18_NC_027986: hypothetical protein; NCTC13685_02298; phage(gi100037)1.27e-50Showinfo_outline
562367936..2368382PHAGE_Pseudo_JBD18_NC_027986: hypothetical protein; NCTC13685_02299; phage(gi100038)3.63e-23Showinfo_outline
572368370..2368570Uncharacterised protein; NCTC13685_023000.0Showinfo_outline
582368557..2369309PHAGE_Pseudo_JBD24_NC_020203: hypothetical protein; NCTC13685_02301; phage(gi448245091)4.97e-60Showinfo_outline
592369306..2369797PHAGE_Pseudo_JBD18_NC_027986: hypothetical protein; NCTC13685_02302; phage(gi100041)4.42e-24Showinfo_outline
602369954..2373226PHAGE_Pseudo_JBD93_NC_030918: hypothetical protein; NCTC13685_02303; phage(gi100045)1.58e-46Showinfo_outline
612373226..2374410PHAGE_Pseudo_JBD93_NC_030918: hypothetical protein; NCTC13685_02304; phage(gi100048)3.54e-79Showinfo_outline
622374397..2375212PHAGE_Proteu_pPM_01_NC_028812: putative tail assembly protein; NCTC13685_02305; phage(gi971745507)1.18e-52Showinfo_outline
632375222..2375455PHAGE_Salmon_118970_sal1_NC_031930: hypothetical protein; NCTC13685_02306; phage(gi100028)9.90e-18Showinfo_outline
642375465..2375662PHAGE_Pseudo_PaMx28_NC_028931: hypothetical protein; NCTC13685_02307; phage(gi971757100)2.61e-12Showinfo_outline
652375663..2378386PHAGE_Pseudo_JBD18_NC_027986: hypothetical protein; NCTC13685_02308; phage(gi100049)1.26e-174Showinfo_outline
662378383..2379186PHAGE_Pseudo_JBD69_NC_030908: hypothetical protein; NCTC13685_02309; phage(gi100045)1.11e-41Showinfo_outline

Region 4, total 46 CDS

#CDS PositionBLAST HitE-ValueSequence
14257714..4257741attL0.0Showinfo_outline
2complement(4264333..4266834)PHAGE_Entero_lambda_NC_001416: Tail fiber protein; NCTC13685_04129; phage(gi9626266)2.96e-73Showinfo_outline
3complement(4266899..4267498)PHAGE_Entero_mEp460_NC_019716: Lom protein; NCTC13685_04130; phage(gi428782335)4.44e-133Showinfo_outline
4complement(4267566..4271045)PHAGE_Entero_mEp460_NC_019716: host specificity protein; NCTC13685_04131; phage(gi428782334)0.0Showinfo_outline
5complement(4271106..4271654)PHAGE_Entero_mEp460_NC_019716: tail assembly protein; NCTC13685_04132; phage(gi428782333)4.26e-119Showinfo_outline
6complement(4271651..4272394)PHAGE_Entero_mEp460_NC_019716: tail fiber component; NCTC13685_04133; phage(gi428782332)0.0Showinfo_outline
7complement(4272400..4273098)PHAGE_Entero_mEp460_NC_019716: minor tail protein; NCTC13685_04134; phage(gi428782331)4.19e-175Showinfo_outline
8complement(4273108..4273437)PHAGE_Entero_mEp460_NC_019716: minor tail protein; NCTC13685_04135; phage(gi428782330)2.19e-77Showinfo_outline
9complement(4273437..4276493)PHAGE_Entero_mEp460_NC_019716: tail length tape measure protein; NCTC13685_04136; phage(gi428782329)0.0Showinfo_outline
10complement(4276465..4276794)PHAGE_Entero_mEp460_NC_019716: tail assembly protein; NCTC13685_04137; phage(gi428782328)5.85e-75Showinfo_outline
11complement(4276803..4277189)PHAGE_Entero_mEp460_NC_019716: minor tail protein; NCTC13685_04138; phage(gi428782327)7.00e-86Showinfo_outline
12complement(4277249..4277992)PHAGE_Entero_mEp460_NC_019716: major tail protein; NCTC13685_04139; phage(gi428782326)1.35e-174Showinfo_outline
13complement(4278003..4278404)PHAGE_Entero_mEp460_NC_019716: minor tail protein; NCTC13685_04140; phage(gi428782325)7.26e-95Showinfo_outline
14complement(4278401..4278979)PHAGE_Entero_mEp460_NC_019716: minor tail protein; NCTC13685_04141; phage(gi428782324)1.00e-134Showinfo_outline
15complement(4279259..4279582)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC13685_04142; phage(gi428782322)7.98e-70Showinfo_outline
16complement(4279669..4281696)PHAGE_Entero_mEp460_NC_019716: putative protease/scaffold protein; NCTC13685_04143; phage(gi428782321)0.0Showinfo_outline
17complement(4281641..4283149)PHAGE_Entero_mEp460_NC_019716: portal protein; NCTC13685_04144; phage(gi428782320)0.0Showinfo_outline
18complement(4283149..4283361)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC13685_04145; phage(gi428782319)7.85e-44Showinfo_outline
19complement(4283358..4285460)PHAGE_Entero_mEp460_NC_019716: terminase large subunit; NCTC13685_04146; phage(gi428782318)0.0Showinfo_outline
20complement(4285460..4285954)PHAGE_Entero_mEp460_NC_019716: terminase small subunit; NCTC13685_04147; phage(gi428782317)1.36e-111Showinfo_outline
214286312..4286488Uncharacterised protein; NCTC13685_041480.0Showinfo_outline
22complement(4287234..4287767)PHAGE_Entero_mEp460_NC_019716: endolysin; NCTC13685_04149; phage(gi428782372)1.27e-124Showinfo_outline
23complement(4287831..4288181)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC13685_04150; phage(gi428782371)1.44e-49Showinfo_outline
24complement(4288186..4288401)PHAGE_Entero_mEp460_NC_019716: porin; NCTC13685_04151; phage(gi428782370)3.79e-45Showinfo_outline
25complement(4288456..4289511)PHAGE_Entero_mEp460_NC_019716: DNA methylase; NCTC13685_04152; phage(gi428782369)0.0Showinfo_outline
26complement(4289522..4290742)PROPHAGE_Escher_CFT073: transposase; NCTC13685_04153; phage(gi26249432)2.28e-60Showinfo_outline
27complement(4290982..4291185)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC13685_04154; phage(gi428782368)1.78e-44Showinfo_outline
284292021..4293229PROPHAGE_Escher_CFT073: transposase; NCTC13685_04155; phage(gi26246249)0.0Showinfo_outline
29complement(4293693..4294682)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC13685_04156; phage(gi428782365)0.0Showinfo_outline
30complement(4294690..4295487)PHAGE_Entero_mEp460_NC_019716: KilA-N domain protein; NCTC13685_04157; phage(gi428782364)4.50e-172Showinfo_outline
31complement(4295507..4295896)PHAGE_Entero_mEp460_NC_019716: holliday junction resolvase; NCTC13685_04158; phage(gi428782363)9.94e-91Showinfo_outline
32complement(4295893..4296219)PHAGE_Entero_mEp460_NC_019716: LexA DNA binding domain protein; NCTC13685_04159; phage(gi428782362)4.10e-74Showinfo_outline
33complement(4296216..4296869)PHAGE_Entero_mEp460_NC_019716: DNA N-6-adenine-methyltransferase; NCTC13685_04160; phage(gi428782361)4.46e-160Showinfo_outline
34complement(4296869..4297357)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC13685_04161; phage(gi428782360)6.25e-114Showinfo_outline
35complement(4297360..4298301)PHAGE_Shigel_SfII_NC_021857: O protein family protein; NCTC13685_04162; phage(gi526244675)0.0Showinfo_outline
36complement(4298311..4298649)PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; NCTC13685_04163; phage(gi557307566)6.16e-79Showinfo_outline
37complement(4298646..4299203)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC13685_04164; phage(gi428782356)3.99e-119Showinfo_outline
38complement(4299196..4299456)PHAGE_Entero_mEp460_NC_019716: putative antirepressor Cro; NCTC13685_04165; phage(gi428782355)2.22e-57Showinfo_outline
394299599..4300246PHAGE_Entero_mEp460_NC_019716: prophage repressor; NCTC13685_04166; phage(gi428782354)6.49e-156Showinfo_outline
404301057..4301311PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC13685_04167; phage(gi428782351)1.87e-56Showinfo_outline
414301377..4302201PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC13685_04168; phage(gi428782350)0.0Showinfo_outline
424302329..4302853PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC13685_04169; phage(gi428782349)1.45e-124Showinfo_outline
434302962..4303357Uncharacterised protein; NCTC13685_041700.0Showinfo_outline
44complement(4303292..4303669)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC13685_04171; phage(gi557307573)1.94e-82Showinfo_outline
454304814..4305986PHAGE_Cronob_phiES15_NC_018454: putative integrase; NCTC13685_04172; phage(gi401817566)0.0Showinfo_outline
464308007..4308034attR0.0Showinfo_outline

Region 5, total 49 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(4871456..4872466)PROPHAGE_Escher_MG1655: glycation-binding protein, predicted protease/chaperone; essential for genome maintenance; NCTC13685_04758; phage(gi16130960)0.0Showinfo_outline
24872704..4872919PHAGE_Pelagi_HTVC008M_NC_020484: 30S ribosomal protein S21; NCTC13685_04759; phage(gi460042545)5.26e-05Showinfo_outline
34873031..4874776PHAGE_Helico_phiHP33_NC_016568: DNA primase; NCTC13685_04760; phage(gi371671350)1.20e-51Showinfo_outline
44874995..4876815PHAGE_Synech_S_CBS3_NC_015465: group 2 RNA polymerase sigma factor; NCTC13685_04761; phage(gi331028036)3.51e-37Showinfo_outline
5complement(4876915..4877421)G:T/U mismatch-specific uracil/thymine DNA-glycosylase; NCTC13685_047620.0Showinfo_outline
64877546..4877621tRNA0.0Showinfo_outline
74877577..4877608attL0.0Showinfo_outline
84878101..4878508PHAGE_Salmon_SP_004_NC_021774: hypothetical protein; NCTC13685_04764; phage(gi526003640)3.18e-36Showinfo_outline
9complement(4878557..4879717)PHAGE_Yersin_L_413C_NC_004745: tail protein; NCTC13685_04765; phage(gi30065731)0.0Showinfo_outline
10complement(4879717..4880196)PHAGE_Yersin_L_413C_NC_004745: gpU; NCTC13685_04766; phage(gi30065730)5.36e-92Showinfo_outline
11complement(4880213..4882651)PHAGE_Yersin_L_413C_NC_004745: gpT; NCTC13685_04767; phage(gi30065729)0.0Showinfo_outline
12complement(4882796..4883071)PHAGE_Yersin_L_413C_NC_004745: gpE; NCTC13685_04768; phage(gi30065727)9.86e-45Showinfo_outline
13complement(4883132..4883647)PHAGE_Escher_pro483_NC_028943: major tail tube protein; NCTC13685_04769; phage(gi971758537)1.74e-91Showinfo_outline
14complement(4883661..4884842)PHAGE_Escher_pro483_NC_028943: major tail sheath protein; NCTC13685_04770; phage(gi971758536)0.0Showinfo_outline
15complement(4884952..4886022)PROPHAGE_Salmon_Ty2: variable tail fiber protein; NCTC13685_04771; phage(gi29143754)2.68e-38Showinfo_outline
16complement(4886044..4886883)Uncharacterised protein; NCTC13685_047720.0Showinfo_outline
17complement(4886885..4888648)PHAGE_Rhodoc_ReqiPoco6_NC_023694: tail fiber protein; NCTC13685_04773; phage(gi593774716)1.15e-07Showinfo_outline
18complement(4888645..4889256)PHAGE_Yersin_L_413C_NC_004745: gpI; NCTC13685_04774; phage(gi30065721)2.38e-61Showinfo_outline
19complement(4889249..4890157)PHAGE_Yersin_L_413C_NC_004745: baseplate assembly protein; NCTC13685_04775; phage(gi30065720)7.20e-149Showinfo_outline
20complement(4890162..4890509)PHAGE_Yersin_L_413C_NC_004745: baseplate wedge subunit; NCTC13685_04776; phage(gi30065719)3.36e-62Showinfo_outline
21complement(4890506..4891183)PHAGE_Salmon_SEN1_NC_029003: baseplate assembly protein V; NCTC13685_04777; phage(gi971764924)3.03e-122Showinfo_outline
22complement(4891216..4891665)PHAGE_Salmon_SEN1_NC_029003: tail completion protein; NCTC13685_04778; phage(gi971764923)4.99e-58Showinfo_outline
23complement(4891658..4892125)PHAGE_Entero_fiAA91_ss_NC_022750: tail completion protein; NCTC13685_04779; phage(gi557307596)2.03e-81Showinfo_outline
24complement(4892221..4892652)PHAGE_Entero_PsP3_NC_005340: gp11; NCTC13685_04780; phage(gi41057363)2.75e-60Showinfo_outline
25complement(4892649..4893146)PHAGE_Yersin_L_413C_NC_004745: gpK; NCTC13685_04781; phage(gi30065713)5.23e-104Showinfo_outline
26complement(4893133..4893423)PHAGE_Salmon_SEN1_NC_029003: holin; NCTC13685_04782; phage(gi971764918)2.36e-47Showinfo_outline
27complement(4893428..4893631)PHAGE_Salmon_SP_004_NC_021774: phage tail protein; NCTC13685_04783; phage(gi526003620)2.92e-34Showinfo_outline
28complement(4893631..4894137)PHAGE_Yersin_L_413C_NC_004745: gpL; NCTC13685_04784; phage(gi30065710)1.91e-96Showinfo_outline
29complement(4894234..4894977)PHAGE_Yersin_L_413C_NC_004745: terminase endonuclease subunit; NCTC13685_04785; phage(gi30065709)1.80e-122Showinfo_outline
30complement(4894981..4896039)PHAGE_Yersin_L_413C_NC_004745: capsid protein; NCTC13685_04786; phage(gi30065708)0.0Showinfo_outline
31complement(4896113..4896967)PHAGE_Yersin_L_413C_NC_004745: capsid-scaffolding protein; NCTC13685_04787; phage(gi30065707)9.89e-172Showinfo_outline
324897133..4898902PHAGE_Yersin_L_413C_NC_004745: terminase ATPase subunit; NCTC13685_04788; phage(gi30065706)0.0Showinfo_outline
334898902..4899945PHAGE_Yersin_L_413C_NC_004745: portal vertex protein; NCTC13685_04789; phage(gi30065705)0.0Showinfo_outline
344900331..4901410PHAGE_Yersin_L_413C_NC_004745: hypothetical protein; NCTC13685_04790; phage(gi30065744)5.59e-47Showinfo_outline
354901410..4902339PHAGE_Entero_WPhi_NC_005056: gp96; NCTC13685_04791; phage(gi33438940)1.50e-119Showinfo_outline
36complement(4902341..4903279)PHAGE_Entero_WPhi_NC_005056: Mth; NCTC13685_04792; phage(gi33438939)0.0Showinfo_outline
37complement(4903416..4903610)PHAGE_Entero_186_NC_001317: Tum; NCTC13685_04793; phage(gi9634097)6.53e-27Showinfo_outline
38complement(4903670..4904890)PROPHAGE_Escher_CFT073: transposase; NCTC13685_04794; phage(gi26249432)4.48e-61Showinfo_outline
39complement(4905050..4907275)PHAGE_Salmon_SEN1_NC_029003: replication protein; NCTC13685_04795; phage(gi971764947)0.0Showinfo_outline
40complement(4907268..4907549)PHAGE_Yersin_L_413C_NC_004745: hypothetical protein; NCTC13685_04796; phage(gi30065741)1.67e-25Showinfo_outline
41complement(4907550..4907771)PHAGE_Salmon_SEN1_NC_029003: putative zinc-finger containing protein; NCTC13685_04797; phage(gi971764944)2.11e-40Showinfo_outline
42complement(4907771..4907998)PHAGE_Salmon_SEN1_NC_029003: hypothetical protein; NCTC13685_04798; phage(gi971764943)8.35e-31Showinfo_outline
43complement(4908067..4908405)PHAGE_Salmon_RE_2010_NC_019488: hypothetical protein; NCTC13685_04799; phage(gi418489688)4.05e-50Showinfo_outline
44complement(4908369..4908569)PHAGE_Entero_PsP3_NC_005340: gp32; NCTC13685_04800; phage(gi41057384)8.24e-39Showinfo_outline
45complement(4908577..4909086)PHAGE_Entero_PsP3_NC_005340: gp31; NCTC13685_04801; phage(gi41057383)4.98e-116Showinfo_outline
46complement(4909117..4909338)PHAGE_Pseudo_phi3_NC_030940: hypothetical protein; NCTC13685_04802; phage(gi100004)2.96e-05Showinfo_outline
474909468..4910052PHAGE_Erwini_ENT90_NC_019932: CI repressor protein; NCTC13685_04803; phage(gi431810951)8.87e-41Showinfo_outline
484910059..4911096PHAGE_Erwini_ENT90_NC_019932: phage integrase family protein; NCTC13685_04804; phage(gi431810942)5.08e-159Showinfo_outline
494911183..4911214attR0.0Showinfo_outline

Region 6, total 25 CDS

#CDS PositionBLAST HitE-ValueSequence
15182678..5182690attL0.0Showinfo_outline
2complement(5182683..5183060)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC13685_05096; phage(gi557307573)1.94e-82Showinfo_outline
35184191..5185057PROPHAGE_Escher_CFT073: transposase; NCTC13685_05097; phage(gi26249432)3.25e-125Showinfo_outline
45185117..5185548PHAGE_Cronob_ENT39118_NC_019934: protein umuD; NCTC13685_05098; phage(gi431811072)3.11e-34Showinfo_outline
55185548..5186819PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; NCTC13685_05099; phage(gi431811050)0.0Showinfo_outline
6complement(5186901..5187866)PHAGE_Entero_P1_NC_005856: ParB; NCTC13685_05100; phage(gi46401681)6.67e-113Showinfo_outline
7complement(5187866..5189071)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; NCTC13685_05101; phage(gi100009)0.0Showinfo_outline
8complement(5190024..5190779)PHAGE_Burkho_KS14_NC_015273: gp37; NCTC13685_05102; phage(gi327198306)4.78e-11Showinfo_outline
95191843..5192055PROPHAGE_Ralsto_GMI1000: isrso12-transposase orfa protein; NCTC13685_05103; phage(gi17546157)1.06e-15Showinfo_outline
10complement(5192183..5193199)PROPHAGE_Shewan_MR-1: IS110 family transposase; NCTC13685_05104; phage(gi24375433)2.05e-71Showinfo_outline
115193772..5194194PROPHAGE_Ralsto_GMI1000: ISRSO12-transposase ORFB protein; NCTC13685_05106; phage(gi17546158)6.64e-59Showinfo_outline
125194273..5194779PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; NCTC13685_05107; phage(gi431811050)6.88e-69Showinfo_outline
135194858..5195010RelB/StbD; NCTC13685_051080.0Showinfo_outline
14complement(5195644..5196615)PHAGE_Yersin_PY54_NC_005069: partitioning protein SpyB; NCTC13685_05109; phage(gi33770536)5.31e-114Showinfo_outline
15complement(5196615..5197781)PHAGE_Klebsi_phiKO2_NC_005857: plasmid partition protein SopA; NCTC13685_05110; phage(gi46402111)0.0Showinfo_outline
165198511..5199521PHAGE_Salmon_SSU5_NC_018843: putative replication protein RepA; NCTC13685_05111; phage(gi410491479)1.31e-115Showinfo_outline
17complement(5200343..5200459)site-specific recombinase, phage integrase family; NCTC13685_051120.0Showinfo_outline
185200463..5200475attL0.0Showinfo_outline
19complement(5200614..5200982)site-specific recombinase, phage integrase family; NCTC13685_051130.0Showinfo_outline
205201171..5201183attR0.0Showinfo_outline
21complement(5202006..5202434)PROPHAGE_Escher_MG1655: IS5 transposase and trans-activator; NCTC13685_05114; phage(gi16129935)5.26e-100Showinfo_outline
22complement(5202613..5203896)Putative transposase; NCTC13685_051150.0Showinfo_outline
23complement(5203970..5204425)PROPHAGE_Escher_MG1655: IS5 transposase and trans-activator; NCTC13685_05116; phage(gi16129935)3.15e-82Showinfo_outline
245204814..5206079PHAGE_Staphy_phiN315_NC_004740: probable ss-1,3-N-acetylglucosaminyltransferase; NCTC13685_05117; phage(gi30043988)2.76e-09Showinfo_outline
255208848..5208860attR0.0Showinfo_outline

Region 7, total 23 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(5356744..5357565)PHAGE_Cronob_vB_CsaM_GAP32_NC_019401: hypothetical protein; NCTC13685_05248; phage(gi414086954)1.66e-55Showinfo_outline
2complement(5357684..5357971)Uncharacterised protein; NCTC13685_052490.0Showinfo_outline
3complement(5358697..5359905)PROPHAGE_Escher_CFT073: transposase; NCTC13685_05250; phage(gi26246249)0.0Showinfo_outline
4complement(5360045..5361265)PROPHAGE_Escher_CFT073: transposase; NCTC13685_05251; phage(gi26249432)2.28e-60Showinfo_outline
55361709..5363196PHAGE_Pseudo_phi3_NC_030940: hypothetical protein; NCTC13685_05253; phage(gi100001)1.81e-33Showinfo_outline
65363273..5363698PHAGE_Cronob_ENT39118_NC_019934: protein umuD; NCTC13685_05254; phage(gi431811072)3.68e-32Showinfo_outline
75363698..5364969PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; NCTC13685_05255; phage(gi431811050)0.0Showinfo_outline
85365065..5365316PHAGE_Acinet_YMC11/12/R2315_NC_028855: hypothetical protein; NCTC13685_05256; phage(gi971749826)9.04e-05Showinfo_outline
95365313..5365612RelE antibacterial toxin protein; NCTC13685_052570.0Showinfo_outline
105365966..5366343PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC13685_05258; phage(gi557307573)1.94e-82Showinfo_outline
115366574..5366879PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; NCTC13685_05259; phage(gi100060)3.17e-32Showinfo_outline
125367079..5367315CcdA protein (antitoxin to CcdB); NCTC13685_052600.0Showinfo_outline
135367319..5367633CcdB toxin protein; NCTC13685_052610.0Showinfo_outline
145367922..5368230Uncharacterised protein; NCTC13685_052620.0Showinfo_outline
15complement(5368292..5368591)Plasmid stabilisation system protein; NCTC13685_052630.0Showinfo_outline
16complement(5368581..5368844)Uncharacterised protein; NCTC13685_052640.0Showinfo_outline
17complement(5369204..5369773)PROPHAGE_Escher_CFT073: transposase; NCTC13685_05265; phage(gi26246249)1.22e-108Showinfo_outline
18complement(5369806..5370183)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC13685_05266; phage(gi557307573)1.94e-82Showinfo_outline
19complement(5370532..5370882)PROPHAGE_Escher_CFT073: transposase; NCTC13685_05267; phage(gi26246249)1.06e-60Showinfo_outline
20complement(5370909..5371187)PHAGE_Haemop_SuMu_NC_019455: IS1414 transposase; NCTC13685_05268; phage(gi418489079)1.37e-18Showinfo_outline
215371586..5371810Ribbon-helix-helix protein, copG family; NCTC13685_052690.0Showinfo_outline
225372349..5372696PHAGE_Stx2_c_1717_NC_011357: transposase; NCTC13685_05270; phage(gi209447152)1.07e-78Showinfo_outline
235372746..5373360PHAGE_Stx2_c_1717_NC_011357: transposase; NCTC13685_05271; phage(gi209447153)1.36e-107Showinfo_outline

Region 8, total 8 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(5386246..5387451)PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; NCTC13685_05286; phage(gi431811050)0.0Showinfo_outline
2complement(5387451..5387873)PHAGE_Cronob_ENT39118_NC_019934: protein umuD; NCTC13685_05287; phage(gi431811072)6.13e-28Showinfo_outline
35387972..5389117PROPHAGE_Escher_CFT073: transposase; NCTC13685_05288; phage(gi26249432)2.83e-54Showinfo_outline
4complement(5389060..5390289)PROPHAGE_Xantho_33913: Tn5041 transposase; NCTC13685_05289; phage(gi21231545)3.84e-32Showinfo_outline
5complement(5390548..5391129)helicase, RecD/TraA family; NCTC13685_052900.0Showinfo_outline
6complement(5391169..5391810)Protein of uncharacterised function (DUF2913); NCTC13685_052910.0Showinfo_outline
7complement(5391833..5392780)PROPHAGE_Escher_MG1655: predicted transposase; NCTC13685_05292; phage(gi16131287)1.18e-118Showinfo_outline
8complement(5392784..5393110)PHAGE_Salmon_118970_sal1_NC_031930: prohead core protein protease; NCTC13685_05293; phage(gi100061)5.27e-13Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 5483705 bps
Phages: 8
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

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