Submission Results

Sequence Name: Not Available

GenBank Accession Number: UGKO00000000.1

GenInfo (GI) Number: 0000000000

Download Results: UGKO00000000.1.PHASTER.zip

gi|00000000|ref|UGKO00000000.1| Klebsiella pneumoniae strain NCTC13686, whole genome shotgun 5452027, gc%: 56.93%

Download summary as .txt file: summary.txt file_download

Total: 7 prophage regions have been identified, of which 5 regions are intact, 1 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
123.4Kbquestionable7016526119-549596 info_outlinePHAGE_Entero_P4_NC_001609(5)49.63%Show info_outline
234.5Kbintact15045654315-688891 info_outlinePHAGE_Vibrio_12B12_NC_021070(29)53.36%Show info_outline
360.2Kbintact120621453963-1514224 info_outlinePHAGE_Pseudo_B3_NC_006548(18)55.70%Show info_outline
450.2Kbintact150443392753-3443046 info_outlinePHAGE_Entero_mEp460_NC_019716(35)50.64%Show info_outline
539.7Kbintact150464006495-4046222 info_outlinePHAGE_Entero_WPhi_NC_005056(17)53.01%Show info_outline
629.5Kbintact110215107452-5137017 info_outlinePHAGE_Entero_P1_NC_005856(5)47.43%Show info_outline
723.6Kbincomplete60185280084-5303683 info_outlinePHAGE_Cronob_ENT39118_NC_019934(2)50.40%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|UGKO00000000.1| Klebsiella pneumoniae strain NCTC13686, whole genome shotgun 5452027, gc%: 56.93%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 18 CDS

#CDS PositionBLAST HitE-ValueSequence
1526119..527468PHAGE_Entero_P4_NC_001609: integrase; NCTC13686_00502; phage(gi9627511)0.0Showinfo_outline
2527499..527849Uncharacterised protein; NCTC13686_005030.0Showinfo_outline
3527849..528136Uncharacterised protein; NCTC13686_005040.0Showinfo_outline
4528507..528737PHAGE_Stenot_S1_NC_011589: putative repressor protein; NCTC13686_00505; phage(gi213163928)8.05e-09Showinfo_outline
5528703..529383PHAGE_Entero_P4_NC_001609: putative CI repressor; NCTC13686_00506; phage(gi9627516)5.77e-08Showinfo_outline
6529376..529735Uncharacterised protein; NCTC13686_005070.0Showinfo_outline
7529767..530051Uncharacterised protein; NCTC13686_005080.0Showinfo_outline
8530048..530431PHAGE_Entero_P4_NC_001609: hypothetical protein; NCTC13686_00509; phage(gi9627513)5.16e-12Showinfo_outline
9530428..533100PHAGE_Entero_P4_NC_001609: DNA primase; NCTC13686_00510; phage(gi9627512)6.05e-43Showinfo_outline
10533501..534262PHAGE_Entero_P4_NC_001609: head size determination protein sid; NCTC13686_00511; phage(gi9627518)3.80e-08Showinfo_outline
11534262..534534PHAGE_Entero_PsP3_NC_005340: Pag; NCTC13686_00512; phage(gi41057379)1.50e-11Showinfo_outline
12534911..535222PHAGE_Salmon_Fels_2_NC_010463: P2 gpE-like tail protein; NCTC13686_00513; phage(gi169936023)1.84e-40Showinfo_outline
13535222..535356PHAGE_Salmon_RE_2010_NC_019488: tail protein E'; NCTC13686_00514; phage(gi418489723)2.84e-18Showinfo_outline
14535349..537982PHAGE_Shigel_SfII_NC_021857: tail protein; NCTC13686_00515; phage(gi526244650)4.12e-108Showinfo_outline
15538324..538335attL0.0Showinfo_outline
16538410..539675PROPHAGE_Escher_CFT073: prophage P4 integrase; NCTC13686_00516; phage(gi26251024)0.0Showinfo_outline
17539910..543422PHAGE_Entero_EFC_1_NC_025453: DEAD/DEAH box helicase; NCTC13686_00517; phage(gi725950530)2.02e-17Showinfo_outline
18549596..549607attR0.0Showinfo_outline

Region 2, total 45 CDS

#CDS PositionBLAST HitE-ValueSequence
1654315..654539PHAGE_Vibrio_12B12_NC_021070: DNA-binding protein Ner; NCTC13686_00629; phage(gi481019194)4.04e-20Showinfo_outline
2654542..656635PROPHAGE_Escher_Sakai: phage transposase; NCTC13686_00630; phage(gi15834199)0.0Showinfo_outline
3656672..657619PHAGE_Vibrio_12B12_NC_021070: DNA transposition protein; NCTC13686_00631; phage(gi481019192)2.19e-105Showinfo_outline
4657624..657863PHAGE_Escher_D108_NC_013594: Kil; NCTC13686_00632; phage(gi281199649)3.57e-19Showinfo_outline
5657866..658123PHAGE_Pseudo_JBD93_NC_030918: hypothetical protein; NCTC13686_00633; phage(gi100013)1.85e-22Showinfo_outline
6658133..658420PHAGE_Escher_D108_NC_013594: hypothetical protein; NCTC13686_00634; phage(gi281199653)3.91e-25Showinfo_outline
7658436..659053PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC13686_00635; phage(gi481019189)2.15e-86Showinfo_outline
8659134..659631PHAGE_Cellul_phi10:1_NC_021802: nucleoside triphosphate pyrophosphohydrolase; NCTC13686_00636; phage(gi526178125)4.73e-09Showinfo_outline
9659628..660182PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC13686_00637; phage(gi481019180)1.65e-26Showinfo_outline
10660179..660571PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC13686_00638; phage(gi481019179)2.53e-21Showinfo_outline
11660577..660897Uncharacterised protein; NCTC13686_006390.0Showinfo_outline
12660992..661573PHAGE_Pantoe_LIMEzero_NC_015585: hypothetical protein; NCTC13686_00640; phage(gi338827197)4.49e-23Showinfo_outline
13661786..662193Uncharacterised protein; NCTC13686_006410.0Showinfo_outline
14662181..662786PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC13686_00642; phage(gi481019175)1.75e-35Showinfo_outline
15662783..663013PHAGE_Vibrio_12B12_NC_021070: C4-type zinc finger protein; NCTC13686_00643; phage(gi481019174)2.78e-11Showinfo_outline
16662994..663296PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC13686_00644; phage(gi481019173)5.20e-15Showinfo_outline
17663306..663593PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC13686_00645; phage(gi481019172)4.01e-36Showinfo_outline
18663593..663868Uncharacterised protein; NCTC13686_006460.0Showinfo_outline
19663865..664443PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC13686_00647; phage(gi481019171)1.45e-71Showinfo_outline
20664443..666029PHAGE_Vibrio_12B12_NC_021070: portal protein; NCTC13686_00648; phage(gi481019169)0.0Showinfo_outline
21666029..667600PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC13686_00649; phage(gi481019168)0.0Showinfo_outline
22667593..668432PHAGE_Vibrio_12B12_NC_021070: F protein; NCTC13686_00650; phage(gi481019167)8.75e-107Showinfo_outline
23668643..669611PHAGE_Vibrio_12B12_NC_021070: I protein; NCTC13686_00651; phage(gi481019166)7.28e-94Showinfo_outline
24669614..670525PHAGE_Vibrio_12B12_NC_021070: major head subunit; NCTC13686_00652; phage(gi481019165)1.27e-129Showinfo_outline
25670842..671114Uncharacterised protein; NCTC13686_006530.0Showinfo_outline
26671115..671555PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC13686_00654; phage(gi481019161)1.85e-45Showinfo_outline
27671555..672097PHAGE_Vibrio_12B12_NC_021070: phage virion morphogenesis protein; NCTC13686_00655; phage(gi481019160)1.35e-80Showinfo_outline
28672094..672702PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC13686_00656; phage(gi481019159)2.38e-45Showinfo_outline
29672699..672887PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC13686_00657; phage(gi481019158)5.26e-05Showinfo_outline
30672889..674367PHAGE_Vibrio_12B12_NC_021070: tail sheath protein; NCTC13686_00658; phage(gi481019157)0.0Showinfo_outline
31674377..674730PHAGE_Vibrio_12B12_NC_021070: tail tube protein; NCTC13686_00659; phage(gi481019156)7.02e-23Showinfo_outline
32674734..675117PHAGE_Vibrio_12B12_NC_021070: extracellular solute-binding protein family 7 protein; NCTC13686_00660; phage(gi481019155)2.92e-27Showinfo_outline
33675216..677012PHAGE_Vibrio_12B12_NC_021070: phage tail tape measure protein; NCTC13686_00661; phage(gi481019154)8.68e-65Showinfo_outline
34677009..678271PHAGE_Vibrio_12B12_NC_021070: DNA circulation protein; NCTC13686_00662; phage(gi481019153)3.59e-113Showinfo_outline
35678456..679355PHAGE_Vibrio_12B12_NC_021070: P protein; NCTC13686_00663; phage(gi481019152)1.27e-95Showinfo_outline
36679346..679885PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC13686_00664; phage(gi481019151)1.48e-44Showinfo_outline
37679882..680331PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC13686_00665; phage(gi481019150)1.11e-33Showinfo_outline
38680321..681394PHAGE_Vibrio_12B12_NC_021070: baseplate J-like protein; NCTC13686_00666; phage(gi481019149)2.90e-126Showinfo_outline
39681379..681963PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC13686_00667; phage(gi481019148)5.03e-59Showinfo_outline
40681963..682712PHAGE_Entero_T4_NC_000866: gp37 long tail fiber, distal subunit; NCTC13686_00668; phage(gi9632629)1.73e-41Showinfo_outline
41682712..683599PHAGE_Entero_HK630_NC_019723: tail fiber assembly protein; NCTC13686_00669; phage(gi428782810)4.51e-33Showinfo_outline
42683612..685462PHAGE_Entero_SfMu_NC_027382: tail fiber protein; NCTC13686_00670; phage(gi849255279)5.14e-17Showinfo_outline
43685462..686322Uncharacterised protein; NCTC13686_006710.0Showinfo_outline
44complement(686570..687790)PROPHAGE_Escher_CFT073: transposase; NCTC13686_00672; phage(gi26249432)2.28e-60Showinfo_outline
45687884..688891PHAGE_Bacill_SPbeta_NC_001884: IMPB/MUCB/SAMB family protein; NCTC13686_00673; phage(gi9630142)1.12e-17Showinfo_outline

Region 3, total 66 CDS

#CDS PositionBLAST HitE-ValueSequence
11453963..1453975attL0.0Showinfo_outline
21465371..1465634PHAGE_Cronob_vB_CsaM_GAP32_NC_019401: glutaredoxin; NCTC13686_01417; phage(gi414087106)3.94e-19Showinfo_outline
3complement(1465641..1466024)inner membrane protein; NCTC13686_014180.0Showinfo_outline
41466291..1467976TrkA, Potassium channel-family protein; NCTC13686_014190.0Showinfo_outline
51468111..1468124attL0.0Showinfo_outline
6complement(1468197..1468418)Uncharacterised protein; NCTC13686_014210.0Showinfo_outline
7complement(1468576..1468791)PHAGE_Salmon_Fels_2_NC_010463: P2 gpOgr-like protein (acttivation of late gene expression); NCTC13686_01422; phage(gi169936018)3.25e-29Showinfo_outline
8complement(1468859..1469128)PHAGE_Salmon_Fels_2_NC_010463: tail protein; NCTC13686_01423; phage(gi169936019)9.58e-45Showinfo_outline
9complement(1469489..1469941)PHAGE_Salmon_Fels_2_NC_010463: tail protein; NCTC13686_01424; phage(gi169936019)5.72e-90Showinfo_outline
10complement(1469938..1470423)PHAGE_Salmon_RE_2010_NC_019488: tail protein; NCTC13686_01425; phage(gi418489725)2.98e-106Showinfo_outline
111470593..1470982PHAGE_Salmon_RE_2010_NC_019488: capsid packaging protein; NCTC13686_01426; phage(gi418489696)1.74e-78Showinfo_outline
12complement(1471003..1471962)PHAGE_Thermu_OH2_NC_021784: SMF family protein; NCTC13686_01427; phage(gi526118339)2.99e-24Showinfo_outline
13complement(1471967..1472542)Uncharacterised protein; NCTC13686_014280.0Showinfo_outline
141473886..1474263PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC13686_01429; phage(gi557307573)1.94e-82Showinfo_outline
151474415..1475623PROPHAGE_Escher_CFT073: transposase; NCTC13686_01430; phage(gi26246249)0.0Showinfo_outline
16complement(1475660..1476124)Uncharacterised protein; NCTC13686_014310.0Showinfo_outline
17complement(1476292..1476669)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC13686_01432; phage(gi557307573)1.94e-82Showinfo_outline
18complement(1477224..1477412)PHAGE_Salmon_RE_2010_NC_019488: hypothetical protein; NCTC13686_01433; phage(gi418489693)1.01e-30Showinfo_outline
19complement(1477501..1478865)PHAGE_Pseudo_phi3_NC_030940: hypothetical protein; NCTC13686_01434; phage(gi100001)1.31e-33Showinfo_outline
20complement(1479701..1479931)PHAGE_Salmon_Fels_2_NC_010463: P2 gpA-like protein; NCTC13686_01436; phage(gi169936054)2.13e-41Showinfo_outline
21complement(1479983..1480345)PHAGE_Salmon_RE_2010_NC_019488: replication protein; NCTC13686_01437; phage(gi418489692)8.64e-69Showinfo_outline
221480359..1480964PHAGE_Erwini_ENT90_NC_019932: phage integrase family protein; NCTC13686_01438; phage(gi431810942)6.37e-62Showinfo_outline
231480971..1480984attR0.0Showinfo_outline
24complement(1481219..1481581)PHAGE_Pseudo_JBD25_NC_027992: hypothetical protein; NCTC13686_01439; phage(gi100001)2.03e-20Showinfo_outline
25complement(1481597..1482022)PHAGE_Burkho_BcepMu_NC_005882: gp02; NCTC13686_01440; phage(gi48696912)9.59e-32Showinfo_outline
26complement(1482009..1482332)PHAGE_Acinet_Bphi_B1251_NC_019541: hypothetical protein; NCTC13686_01441; phage(gi423262042)5.46e-12Showinfo_outline
27complement(1482442..1483164)PHAGE_Pseudo_JBD18_NC_027986: hypothetical protein; NCTC13686_01442; phage(gi100005)6.81e-29Showinfo_outline
28complement(1483148..1483441)PHAGE_Clostr_phiCTC2B_NC_030951: hypothetical protein; NCTC13686_01443; phage(gi100016)7.13e-08Showinfo_outline
29complement(1483432..1483638)Uncharacterised protein; NCTC13686_014440.0Showinfo_outline
30complement(1483635..1484159)PHAGE_Pseudo_JBD93_NC_030918: hypothetical protein; NCTC13686_01445; phage(gi100012)6.90e-67Showinfo_outline
31complement(1484175..1484390)Uncharacterised protein; NCTC13686_014460.0Showinfo_outline
32complement(1484394..1484690)Uncharacterised protein; NCTC13686_014470.0Showinfo_outline
33complement(1484718..1485881)PHAGE_Pseudo_JBD18_NC_027986: hypothetical protein; NCTC13686_01448; phage(gi100012)3.61e-119Showinfo_outline
34complement(1485890..1487662)PHAGE_Pseudo_JBD18_NC_027986: hypothetical protein; NCTC13686_01449; phage(gi100013)0.0Showinfo_outline
35complement(1487664..1488575)PHAGE_Pseudo_JBD25_NC_027992: hypothetical protein; NCTC13686_01450; phage(gi100015)4.14e-13Showinfo_outline
36complement(1488589..1488897)PHAGE_Pseudo_B3_NC_006548: hypothetical protein; NCTC13686_01451; phage(gi56692582)1.89e-36Showinfo_outline
37complement(1488901..1489125)Uncharacterised protein; NCTC13686_014520.0Showinfo_outline
38complement(1490099..1490866)PHAGE_Vibrio_VP882_NC_009016: DNA adenine methylase; NCTC13686_01453; phage(gi126010878)6.05e-131Showinfo_outline
391491077..1491574Uncharacterised protein; NCTC13686_014540.0Showinfo_outline
401491605..1491952Uncharacterised protein; NCTC13686_014550.0Showinfo_outline
411492051..1492419PHAGE_Pseudo_JBD25_NC_027992: hypothetical protein; NCTC13686_01456; phage(gi100024)6.09e-08Showinfo_outline
421492422..1493036PHAGE_Pseudo_JBD25_NC_027992: hypothetical protein; NCTC13686_01457; phage(gi100026)2.75e-81Showinfo_outline
431493297..1493575PHAGE_Pseudo_JBD93_NC_030918: hypothetical protein; NCTC13686_01458; phage(gi100026)2.78e-06Showinfo_outline
441493565..1493867Protein of uncharacterised function (DUF2730); NCTC13686_014590.0Showinfo_outline
451493879..1494175PHAGE_Pseudo_JBD25_NC_027992: hypothetical protein; NCTC13686_01460; phage(gi100030)1.20e-41Showinfo_outline
461494117..1494728PHAGE_Pseudo_JBD25_NC_027992: hypothetical protein; NCTC13686_01461; phage(gi100031)2.85e-65Showinfo_outline
471494728..1496407PHAGE_Pseudo_JBD18_NC_027986: hypothetical protein; NCTC13686_01462; phage(gi100029)3.44e-99Showinfo_outline
481496404..1497918PHAGE_Pseudo_JBD18_NC_027986: hypothetical protein; NCTC13686_01463; phage(gi100030)1.15e-180Showinfo_outline
491497908..1499125PHAGE_Pseudo_JBD25_NC_027992: hypothetical protein; NCTC13686_01464; phage(gi100034)1.86e-152Showinfo_outline
501499125..1499688PHAGE_Pseudo_JBD25_NC_027992: hypothetical protein; NCTC13686_01465; phage(gi100035)5.43e-60Showinfo_outline
511499925..1501070PHAGE_Pseudo_JBD18_NC_027986: hypothetical protein; NCTC13686_01466; phage(gi100033)1.17e-114Showinfo_outline
521501067..1501444PHAGE_Pseudo_JBD18_NC_027986: hypothetical protein; NCTC13686_01467; phage(gi100034)1.06e-26Showinfo_outline
531501463..1501475attR0.0Showinfo_outline
541501512..1502441PHAGE_Pseudo_JBD18_NC_027986: hypothetical protein; NCTC13686_01468; phage(gi100035)1.60e-161Showinfo_outline
551502453..1502977PHAGE_Pseudo_JBD18_NC_027986: hypothetical protein; NCTC13686_01469; phage(gi100037)1.27e-50Showinfo_outline
561502974..1503420PHAGE_Pseudo_JBD18_NC_027986: hypothetical protein; NCTC13686_01470; phage(gi100038)3.63e-23Showinfo_outline
571503408..1503608Uncharacterised protein; NCTC13686_014710.0Showinfo_outline
581503595..1504347PHAGE_Pseudo_JBD24_NC_020203: hypothetical protein; NCTC13686_01472; phage(gi448245091)4.97e-60Showinfo_outline
591504344..1504835PHAGE_Pseudo_JBD18_NC_027986: hypothetical protein; NCTC13686_01473; phage(gi100041)4.42e-24Showinfo_outline
601504992..1508264PHAGE_Pseudo_JBD93_NC_030918: hypothetical protein; NCTC13686_01474; phage(gi100045)1.58e-46Showinfo_outline
611508264..1509448PHAGE_Pseudo_JBD93_NC_030918: hypothetical protein; NCTC13686_01475; phage(gi100048)3.54e-79Showinfo_outline
621509435..1510250PHAGE_Proteu_pPM_01_NC_028812: putative tail assembly protein; NCTC13686_01476; phage(gi971745507)1.18e-52Showinfo_outline
631510260..1510493PHAGE_Salmon_118970_sal1_NC_031930: hypothetical protein; NCTC13686_01477; phage(gi100028)9.90e-18Showinfo_outline
641510503..1510700PHAGE_Pseudo_PaMx28_NC_028931: hypothetical protein; NCTC13686_01478; phage(gi971757100)2.61e-12Showinfo_outline
651510701..1513424PHAGE_Pseudo_JBD18_NC_027986: hypothetical protein; NCTC13686_01479; phage(gi100049)1.26e-174Showinfo_outline
661513421..1514224PHAGE_Pseudo_JBD69_NC_030908: hypothetical protein; NCTC13686_01480; phage(gi100045)1.11e-41Showinfo_outline

Region 4, total 46 CDS

#CDS PositionBLAST HitE-ValueSequence
13392753..3392780attL0.0Showinfo_outline
2complement(3399372..3401873)PHAGE_Entero_lambda_NC_001416: Tail fiber protein; NCTC13686_03301; phage(gi9626266)2.96e-73Showinfo_outline
3complement(3401938..3402537)PHAGE_Entero_mEp460_NC_019716: Lom protein; NCTC13686_03302; phage(gi428782335)4.44e-133Showinfo_outline
4complement(3402605..3406084)PHAGE_Entero_mEp460_NC_019716: host specificity protein; NCTC13686_03303; phage(gi428782334)0.0Showinfo_outline
5complement(3406145..3406693)PHAGE_Entero_mEp460_NC_019716: tail assembly protein; NCTC13686_03304; phage(gi428782333)4.26e-119Showinfo_outline
6complement(3406690..3407433)PHAGE_Entero_mEp460_NC_019716: tail fiber component; NCTC13686_03305; phage(gi428782332)0.0Showinfo_outline
7complement(3407439..3408137)PHAGE_Entero_mEp460_NC_019716: minor tail protein; NCTC13686_03306; phage(gi428782331)4.19e-175Showinfo_outline
8complement(3408147..3408476)PHAGE_Entero_mEp460_NC_019716: minor tail protein; NCTC13686_03307; phage(gi428782330)2.19e-77Showinfo_outline
9complement(3408476..3411532)PHAGE_Entero_mEp460_NC_019716: tail length tape measure protein; NCTC13686_03308; phage(gi428782329)0.0Showinfo_outline
10complement(3411504..3411833)PHAGE_Entero_mEp460_NC_019716: tail assembly protein; NCTC13686_03309; phage(gi428782328)5.85e-75Showinfo_outline
11complement(3411842..3412228)PHAGE_Entero_mEp460_NC_019716: minor tail protein; NCTC13686_03310; phage(gi428782327)7.00e-86Showinfo_outline
12complement(3412288..3413031)PHAGE_Entero_mEp460_NC_019716: major tail protein; NCTC13686_03311; phage(gi428782326)1.35e-174Showinfo_outline
13complement(3413042..3413443)PHAGE_Entero_mEp460_NC_019716: minor tail protein; NCTC13686_03312; phage(gi428782325)7.26e-95Showinfo_outline
14complement(3413440..3414018)PHAGE_Entero_mEp460_NC_019716: minor tail protein; NCTC13686_03313; phage(gi428782324)1.00e-134Showinfo_outline
15complement(3414298..3414621)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC13686_03314; phage(gi428782322)7.98e-70Showinfo_outline
16complement(3414708..3416735)PHAGE_Entero_mEp460_NC_019716: putative protease/scaffold protein; NCTC13686_03315; phage(gi428782321)0.0Showinfo_outline
17complement(3416680..3418188)PHAGE_Entero_mEp460_NC_019716: portal protein; NCTC13686_03316; phage(gi428782320)0.0Showinfo_outline
18complement(3418188..3418400)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC13686_03317; phage(gi428782319)7.85e-44Showinfo_outline
19complement(3418397..3420499)PHAGE_Entero_mEp460_NC_019716: terminase large subunit; NCTC13686_03318; phage(gi428782318)0.0Showinfo_outline
20complement(3420499..3420993)PHAGE_Entero_mEp460_NC_019716: terminase small subunit; NCTC13686_03319; phage(gi428782317)1.36e-111Showinfo_outline
213421351..3421527Uncharacterised protein; NCTC13686_033200.0Showinfo_outline
22complement(3422273..3422806)PHAGE_Entero_mEp460_NC_019716: endolysin; NCTC13686_03321; phage(gi428782372)1.27e-124Showinfo_outline
23complement(3422870..3423220)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC13686_03322; phage(gi428782371)1.44e-49Showinfo_outline
24complement(3423225..3423440)PHAGE_Entero_mEp460_NC_019716: porin; NCTC13686_03323; phage(gi428782370)3.79e-45Showinfo_outline
25complement(3423495..3424550)PHAGE_Entero_mEp460_NC_019716: DNA methylase; NCTC13686_03324; phage(gi428782369)0.0Showinfo_outline
26complement(3424561..3425781)PROPHAGE_Escher_CFT073: transposase; NCTC13686_03325; phage(gi26249432)2.28e-60Showinfo_outline
27complement(3426021..3426224)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC13686_03326; phage(gi428782368)1.78e-44Showinfo_outline
283427060..3428268PROPHAGE_Escher_CFT073: transposase; NCTC13686_03327; phage(gi26246249)0.0Showinfo_outline
29complement(3428732..3429721)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC13686_03328; phage(gi428782365)0.0Showinfo_outline
30complement(3429729..3430526)PHAGE_Entero_mEp460_NC_019716: KilA-N domain protein; NCTC13686_03329; phage(gi428782364)4.50e-172Showinfo_outline
31complement(3430546..3430935)PHAGE_Entero_mEp460_NC_019716: holliday junction resolvase; NCTC13686_03330; phage(gi428782363)9.94e-91Showinfo_outline
32complement(3430932..3431258)PHAGE_Entero_mEp460_NC_019716: LexA DNA binding domain protein; NCTC13686_03331; phage(gi428782362)4.10e-74Showinfo_outline
33complement(3431255..3431908)PHAGE_Entero_mEp460_NC_019716: DNA N-6-adenine-methyltransferase; NCTC13686_03332; phage(gi428782361)4.46e-160Showinfo_outline
34complement(3431908..3432396)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC13686_03333; phage(gi428782360)6.25e-114Showinfo_outline
35complement(3432399..3433340)PHAGE_Shigel_SfII_NC_021857: O protein family protein; NCTC13686_03334; phage(gi526244675)0.0Showinfo_outline
36complement(3433350..3433688)PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; NCTC13686_03335; phage(gi557307566)6.16e-79Showinfo_outline
37complement(3433685..3434242)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC13686_03336; phage(gi428782356)3.99e-119Showinfo_outline
38complement(3434235..3434495)PHAGE_Entero_mEp460_NC_019716: putative antirepressor Cro; NCTC13686_03337; phage(gi428782355)2.22e-57Showinfo_outline
393434638..3435285PHAGE_Entero_mEp460_NC_019716: prophage repressor; NCTC13686_03338; phage(gi428782354)6.49e-156Showinfo_outline
403436096..3436350PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC13686_03339; phage(gi428782351)1.87e-56Showinfo_outline
413436416..3437240PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC13686_03340; phage(gi428782350)0.0Showinfo_outline
423437368..3437892PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC13686_03341; phage(gi428782349)1.45e-124Showinfo_outline
433438001..3438396Uncharacterised protein; NCTC13686_033420.0Showinfo_outline
44complement(3438331..3438708)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC13686_03343; phage(gi557307573)1.94e-82Showinfo_outline
453439853..3441025PHAGE_Cronob_phiES15_NC_018454: putative integrase; NCTC13686_03344; phage(gi401817566)0.0Showinfo_outline
463443046..3443073attR0.0Showinfo_outline

Region 5, total 49 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(4006495..4007505)PROPHAGE_Escher_MG1655: glycation-binding protein, predicted protease/chaperone; essential for genome maintenance; NCTC13686_03930; phage(gi16130960)0.0Showinfo_outline
24007743..4007958PHAGE_Pelagi_HTVC008M_NC_020484: 30S ribosomal protein S21; NCTC13686_03931; phage(gi460042545)5.26e-05Showinfo_outline
34008070..4009815PHAGE_Helico_phiHP33_NC_016568: DNA primase; NCTC13686_03932; phage(gi371671350)1.20e-51Showinfo_outline
44010034..4011854PHAGE_Synech_S_CBS3_NC_015465: group 2 RNA polymerase sigma factor; NCTC13686_03933; phage(gi331028036)3.51e-37Showinfo_outline
5complement(4011954..4012460)G:T/U mismatch-specific uracil/thymine DNA-glycosylase; NCTC13686_039340.0Showinfo_outline
64012585..4012660tRNA0.0Showinfo_outline
74012616..4012647attL0.0Showinfo_outline
84013140..4013547PHAGE_Salmon_SP_004_NC_021774: hypothetical protein; NCTC13686_03936; phage(gi526003640)3.18e-36Showinfo_outline
9complement(4013596..4014756)PHAGE_Yersin_L_413C_NC_004745: tail protein; NCTC13686_03937; phage(gi30065731)0.0Showinfo_outline
10complement(4014756..4015235)PHAGE_Yersin_L_413C_NC_004745: gpU; NCTC13686_03938; phage(gi30065730)5.36e-92Showinfo_outline
11complement(4015252..4017690)PHAGE_Yersin_L_413C_NC_004745: gpT; NCTC13686_03939; phage(gi30065729)0.0Showinfo_outline
12complement(4017835..4018110)PHAGE_Yersin_L_413C_NC_004745: gpE; NCTC13686_03940; phage(gi30065727)9.86e-45Showinfo_outline
13complement(4018171..4018686)PHAGE_Escher_pro483_NC_028943: major tail tube protein; NCTC13686_03941; phage(gi971758537)1.74e-91Showinfo_outline
14complement(4018700..4019881)PHAGE_Escher_pro483_NC_028943: major tail sheath protein; NCTC13686_03942; phage(gi971758536)0.0Showinfo_outline
15complement(4019991..4021061)PROPHAGE_Salmon_Ty2: variable tail fiber protein; NCTC13686_03943; phage(gi29143754)2.68e-38Showinfo_outline
16complement(4021083..4021922)Uncharacterised protein; NCTC13686_039440.0Showinfo_outline
17complement(4021924..4023687)PHAGE_Rhodoc_ReqiPoco6_NC_023694: tail fiber protein; NCTC13686_03945; phage(gi593774716)1.15e-07Showinfo_outline
18complement(4023684..4024295)PHAGE_Yersin_L_413C_NC_004745: gpI; NCTC13686_03946; phage(gi30065721)2.38e-61Showinfo_outline
19complement(4024288..4025196)PHAGE_Yersin_L_413C_NC_004745: baseplate assembly protein; NCTC13686_03947; phage(gi30065720)7.20e-149Showinfo_outline
20complement(4025201..4025548)PHAGE_Yersin_L_413C_NC_004745: baseplate wedge subunit; NCTC13686_03948; phage(gi30065719)3.36e-62Showinfo_outline
21complement(4025545..4026222)PHAGE_Salmon_SEN1_NC_029003: baseplate assembly protein V; NCTC13686_03949; phage(gi971764924)3.03e-122Showinfo_outline
22complement(4026255..4026704)PHAGE_Salmon_SEN1_NC_029003: tail completion protein; NCTC13686_03950; phage(gi971764923)4.99e-58Showinfo_outline
23complement(4026697..4027164)PHAGE_Entero_fiAA91_ss_NC_022750: tail completion protein; NCTC13686_03951; phage(gi557307596)2.03e-81Showinfo_outline
24complement(4027260..4027691)PHAGE_Entero_PsP3_NC_005340: gp11; NCTC13686_03952; phage(gi41057363)2.75e-60Showinfo_outline
25complement(4027688..4028185)PHAGE_Yersin_L_413C_NC_004745: gpK; NCTC13686_03953; phage(gi30065713)5.23e-104Showinfo_outline
26complement(4028172..4028462)PHAGE_Salmon_SEN1_NC_029003: holin; NCTC13686_03954; phage(gi971764918)2.36e-47Showinfo_outline
27complement(4028467..4028670)PHAGE_Salmon_SP_004_NC_021774: phage tail protein; NCTC13686_03955; phage(gi526003620)2.92e-34Showinfo_outline
28complement(4028670..4029176)PHAGE_Yersin_L_413C_NC_004745: gpL; NCTC13686_03956; phage(gi30065710)1.91e-96Showinfo_outline
29complement(4029273..4030016)PHAGE_Yersin_L_413C_NC_004745: terminase endonuclease subunit; NCTC13686_03957; phage(gi30065709)1.80e-122Showinfo_outline
30complement(4030020..4031078)PHAGE_Yersin_L_413C_NC_004745: capsid protein; NCTC13686_03958; phage(gi30065708)0.0Showinfo_outline
31complement(4031152..4032006)PHAGE_Yersin_L_413C_NC_004745: capsid-scaffolding protein; NCTC13686_03959; phage(gi30065707)9.89e-172Showinfo_outline
324032172..4033941PHAGE_Yersin_L_413C_NC_004745: terminase ATPase subunit; NCTC13686_03960; phage(gi30065706)0.0Showinfo_outline
334033941..4034984PHAGE_Yersin_L_413C_NC_004745: portal vertex protein; NCTC13686_03961; phage(gi30065705)0.0Showinfo_outline
344035370..4036449PHAGE_Yersin_L_413C_NC_004745: hypothetical protein; NCTC13686_03962; phage(gi30065744)5.59e-47Showinfo_outline
354036449..4037378PHAGE_Entero_WPhi_NC_005056: gp96; NCTC13686_03963; phage(gi33438940)1.50e-119Showinfo_outline
36complement(4037380..4038318)PHAGE_Entero_WPhi_NC_005056: Mth; NCTC13686_03964; phage(gi33438939)0.0Showinfo_outline
37complement(4038455..4038649)PHAGE_Entero_186_NC_001317: Tum; NCTC13686_03965; phage(gi9634097)6.53e-27Showinfo_outline
38complement(4038709..4039929)PROPHAGE_Escher_CFT073: transposase; NCTC13686_03966; phage(gi26249432)4.48e-61Showinfo_outline
39complement(4040089..4042314)PHAGE_Salmon_SEN1_NC_029003: replication protein; NCTC13686_03967; phage(gi971764947)0.0Showinfo_outline
40complement(4042307..4042588)PHAGE_Yersin_L_413C_NC_004745: hypothetical protein; NCTC13686_03968; phage(gi30065741)1.67e-25Showinfo_outline
41complement(4042589..4042810)PHAGE_Salmon_SEN1_NC_029003: putative zinc-finger containing protein; NCTC13686_03969; phage(gi971764944)2.11e-40Showinfo_outline
42complement(4042810..4043037)PHAGE_Salmon_SEN1_NC_029003: hypothetical protein; NCTC13686_03970; phage(gi971764943)8.35e-31Showinfo_outline
43complement(4043106..4043444)PHAGE_Salmon_RE_2010_NC_019488: hypothetical protein; NCTC13686_03971; phage(gi418489688)4.05e-50Showinfo_outline
44complement(4043408..4043608)PHAGE_Entero_PsP3_NC_005340: gp32; NCTC13686_03972; phage(gi41057384)8.24e-39Showinfo_outline
45complement(4043616..4044125)PHAGE_Entero_PsP3_NC_005340: gp31; NCTC13686_03973; phage(gi41057383)4.98e-116Showinfo_outline
46complement(4044156..4044377)PHAGE_Pseudo_phi3_NC_030940: hypothetical protein; NCTC13686_03974; phage(gi100004)2.96e-05Showinfo_outline
474044507..4045091PHAGE_Erwini_ENT90_NC_019932: CI repressor protein; NCTC13686_03975; phage(gi431810951)8.87e-41Showinfo_outline
484045098..4046135PHAGE_Erwini_ENT90_NC_019932: phage integrase family protein; NCTC13686_03976; phage(gi431810942)5.08e-159Showinfo_outline
494046222..4046253attR0.0Showinfo_outline

Region 6, total 25 CDS

#CDS PositionBLAST HitE-ValueSequence
15107452..5107480attL0.0Showinfo_outline
2complement(5110249..5111514)PHAGE_Staphy_phiN315_NC_004740: probable ss-1,3-N-acetylglucosaminyltransferase; NCTC13686_05007; phage(gi30043988)2.76e-09Showinfo_outline
35111903..5112358PROPHAGE_Escher_MG1655: IS5 transposase and trans-activator; NCTC13686_05008; phage(gi16129935)3.15e-82Showinfo_outline
45112432..5113715Putative transposase; NCTC13686_050090.0Showinfo_outline
55113894..5114322PROPHAGE_Escher_MG1655: IS5 transposase and trans-activator; NCTC13686_05010; phage(gi16129935)5.26e-100Showinfo_outline
65115145..5115157attL0.0Showinfo_outline
75115346..5115714site-specific recombinase, phage integrase family; NCTC13686_050110.0Showinfo_outline
85115853..5115865attR0.0Showinfo_outline
95115869..5115985site-specific recombinase, phage integrase family; NCTC13686_050120.0Showinfo_outline
10complement(5116807..5117817)PHAGE_Salmon_SSU5_NC_018843: putative replication protein RepA; NCTC13686_05013; phage(gi410491479)1.31e-115Showinfo_outline
115118547..5119713PHAGE_Klebsi_phiKO2_NC_005857: plasmid partition protein SopA; NCTC13686_05014; phage(gi46402111)0.0Showinfo_outline
125119713..5120684PHAGE_Yersin_PY54_NC_005069: partitioning protein SpyB; NCTC13686_05015; phage(gi33770536)5.31e-114Showinfo_outline
13complement(5121318..5121470)RelB/StbD; NCTC13686_050160.0Showinfo_outline
14complement(5121549..5122055)PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; NCTC13686_05017; phage(gi431811050)6.88e-69Showinfo_outline
15complement(5122134..5122556)PROPHAGE_Ralsto_GMI1000: ISRSO12-transposase ORFB protein; NCTC13686_05018; phage(gi17546158)6.64e-59Showinfo_outline
165123129..5124145PROPHAGE_Shewan_MR-1: IS110 family transposase; NCTC13686_05020; phage(gi24375433)2.05e-71Showinfo_outline
17complement(5124273..5124485)PROPHAGE_Ralsto_GMI1000: isrso12-transposase orfa protein; NCTC13686_05021; phage(gi17546157)1.06e-15Showinfo_outline
185125549..5126304PHAGE_Burkho_KS14_NC_015273: gp37; NCTC13686_05022; phage(gi327198306)4.78e-11Showinfo_outline
195127257..5128462PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; NCTC13686_05023; phage(gi100009)0.0Showinfo_outline
205128462..5129427PHAGE_Entero_P1_NC_005856: ParB; NCTC13686_05024; phage(gi46401681)6.67e-113Showinfo_outline
21complement(5129509..5130780)PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; NCTC13686_05025; phage(gi431811050)0.0Showinfo_outline
22complement(5130780..5131211)PHAGE_Cronob_ENT39118_NC_019934: protein umuD; NCTC13686_05026; phage(gi431811072)3.11e-34Showinfo_outline
23complement(5131271..5132137)PROPHAGE_Escher_CFT073: transposase; NCTC13686_05027; phage(gi26249432)3.25e-125Showinfo_outline
245133268..5133645PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC13686_05028; phage(gi557307573)1.94e-82Showinfo_outline
255137017..5137045attR0.0Showinfo_outline

Region 7, total 22 CDS

#CDS PositionBLAST HitE-ValueSequence
15280084..5280116attL0.0Showinfo_outline
25280375..5280386attL0.0Showinfo_outline
3complement(5282992..5283387)PROPHAGE_Escher_CFT073: transposase insF; NCTC13686_05170; phage(gi26250329)1.08e-41Showinfo_outline
45283929..5283940attR0.0Showinfo_outline
55284002..5284613Protein of uncharacterised function (DUF2913); NCTC13686_051710.0Showinfo_outline
6complement(5284648..5285664)Abi-like protein; NCTC13686_051720.0Showinfo_outline
75286031..5286606Uncharacterised protein; NCTC13686_051730.0Showinfo_outline
8complement(5286744..5287610)Protein of uncharacterised function (DUF3644); NCTC13686_051740.0Showinfo_outline
9complement(5287623..5288270)PHAGE_Ralsto_RSM1_NC_008574: hypothetical protein; NCTC13686_05175; phage(gi117676354)1.80e-06Showinfo_outline
105288763..5289629PHAGE_Brevib_Sundance_NC_028749: putative cobyrinic acid ac-diamide synthase; NCTC13686_05176; phage(gi971482557)1.09e-06Showinfo_outline
115289629..5290660putative partitioning protein ParB; NCTC13686_051770.0Showinfo_outline
12complement(5291157..5291282)Uncharacterised protein; NCTC13686_051780.0Showinfo_outline
135291467..5292840RES domain-containing protein; NCTC13686_051790.0Showinfo_outline
14complement(5292957..5294162)PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; NCTC13686_05180; phage(gi431811050)0.0Showinfo_outline
15complement(5294162..5294584)PHAGE_Cronob_ENT39118_NC_019934: protein umuD; NCTC13686_05181; phage(gi431811072)6.13e-28Showinfo_outline
165294683..5295828PROPHAGE_Escher_CFT073: transposase; NCTC13686_05182; phage(gi26249432)2.83e-54Showinfo_outline
17complement(5295771..5297000)PROPHAGE_Xantho_33913: Tn5041 transposase; NCTC13686_05183; phage(gi21231545)3.84e-32Showinfo_outline
18complement(5297259..5297840)helicase, RecD/TraA family; NCTC13686_051840.0Showinfo_outline
19complement(5297880..5298521)Protein of uncharacterised function (DUF2913); NCTC13686_051850.0Showinfo_outline
20complement(5298544..5299491)PROPHAGE_Escher_MG1655: predicted transposase; NCTC13686_05186; phage(gi16131287)1.18e-118Showinfo_outline
21complement(5299495..5299821)PHAGE_Salmon_118970_sal1_NC_031930: prohead core protein protease; NCTC13686_05187; phage(gi100061)5.27e-13Showinfo_outline
225303683..5303715attR0.0Showinfo_outline
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Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 5452027 bps
Phages: 7
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download