Submission Results

Sequence Name: Not Available

GenBank Accession Number: UGKX00000000.1

GenInfo (GI) Number: 0000000000

Download Results: UGKX00000000.1.PHASTER.zip

gi|00000000|ref|UGKX00000000.1| Klebsiella pneumoniae strain NCTC13440, whole genome shotgun 5297680, gc%: 57.52%

Download summary as .txt file: summary.txt file_download

Total: 2 prophage regions have been identified, of which 2 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
181.6Kbintact150642995570-3077197 info_outlinePHAGE_Escher_HK639_NC_016158(9)52.11%Show info_outline
243.7Kbintact150523204067-3247854 info_outlinePHAGE_Entero_mEp235_NC_019708(12)50.53%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|UGKX00000000.1| Klebsiella pneumoniae strain NCTC13440, whole genome shotgun 5297680, gc%: 57.52%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 66 CDS

#CDS PositionBLAST HitE-ValueSequence
12995570..2995585attL0.0Showinfo_outline
2complement(3006451..3010227)PHAGE_Klebsi_0507_KN2_1_NC_022343: putative tail fiber protein; NCTC13440_03033; phage(gi543171774)5.30e-170Showinfo_outline
3complement(3010284..3010544)PHAGE_Pseudo_PS_1_NC_029066: tail protein; NCTC13440_03034; phage(gi985757719)1.09e-05Showinfo_outline
4complement(3010577..3012208)PHAGE_Pseudo_PS_1_NC_029066: tail protein; NCTC13440_03035; phage(gi985757719)1.94e-62Showinfo_outline
5complement(3012153..3013346)PHAGE_Pseudo_PMG1_NC_016765: putative tail protein; NCTC13440_03036; phage(gi374531670)3.77e-32Showinfo_outline
6complement(3013343..3013723)PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_030909: hypothetical protein; NCTC13440_03037; phage(gi100020)2.06e-21Showinfo_outline
7complement(3013733..3014215)PHAGE_Pseudo_D3_NC_002484: hypothetical protein; NCTC13440_03038; phage(gi9635614)9.46e-37Showinfo_outline
8complement(3014396..3014860)PHAGE_Pseudo_PAJU2_NC_011373: hypothetical protein; NCTC13440_03039; phage(gi209552438)2.41e-51Showinfo_outline
9complement(3015177..3015512)Uncharacterised protein; NCTC13440_030400.0Showinfo_outline
10complement(3015596..3018475)PHAGE_Pseudo_MP29_NC_011613: putative tail component protein; NCTC13440_03041; phage(gi215480016)4.30e-72Showinfo_outline
11complement(3019028..3019384)Uncharacterised protein; NCTC13440_030420.0Showinfo_outline
12complement(3019805..3020287)PHAGE_Pseudo_phiPSA1_NC_024365: hypothetical protein; NCTC13440_03043; phage(gi658307708)9.16e-11Showinfo_outline
13complement(3020341..3021513)PHAGE_Vibrio_VpKK5_NC_026610: tail subunit; NCTC13440_03044; phage(gi764162154)5.05e-13Showinfo_outline
14complement(3021537..3021929)PHAGE_Acinet_Bphi_B1251_NC_019541: hypothetical protein; NCTC13440_03045; phage(gi423262013)2.37e-19Showinfo_outline
15complement(3021926..3022477)PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC13440_03046; phage(gi356870610)1.66e-36Showinfo_outline
16complement(3022479..3022862)PHAGE_Pseudo_YMC11/02/R656_NC_028657: hypothetical protein; NCTC13440_03047; phage(gi966197873)8.61e-28Showinfo_outline
17complement(3022849..3023082)Uncharacterised protein; NCTC13440_030480.0Showinfo_outline
18complement(3023084..3023494)PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; NCTC13440_03049; phage(gi985757703)2.56e-18Showinfo_outline
19complement(3023498..3023710)PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC13440_03050; phage(gi356870607)1.67e-16Showinfo_outline
20complement(3023750..3024886)PHAGE_Rhizob_vB_RglS_P106B_NC_023566: putative coat protein; NCTC13440_03051; phage(gi589890404)2.72e-87Showinfo_outline
21complement(3024974..3025738)PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC13440_03052; phage(gi356870605)2.57e-125Showinfo_outline
22complement(3025845..3026870)PHAGE_Pseudo_PS_1_NC_029066: head morphogenesis protein; NCTC13440_03053; phage(gi985757697)1.10e-101Showinfo_outline
23complement(3026941..3028365)PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC13440_03054; phage(gi356870603)0.0Showinfo_outline
24complement(3028370..3029674)PHAGE_Acinet_vB_AbaS_TRS1_NC_031098: hypothetical protein; NCTC13440_03055; phage(gi100002)0.0Showinfo_outline
25complement(3029652..3030647)PHAGE_Burkho_BcepMigl_NC_019917: terminase small subunit; NCTC13440_03056; phage(gi431809885)3.98e-56Showinfo_outline
26complement(3031738..3032013)PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC13440_03057; phage(gi428782715)4.75e-35Showinfo_outline
27complement(3032010..3032354)PHAGE_Pseudo_vB_Pae_Kakheti25_NC_017864: holin; NCTC13440_03058; phage(gi388542661)1.19e-09Showinfo_outline
28complement(3032351..3032890)PHAGE_Erwini_vB_EamP_S6_NC_019514: endolysin; NCTC13440_03059; phage(gi422935930)1.85e-82Showinfo_outline
29complement(3032887..3033198)PHAGE_Salmon_ST64T_NC_004348: holin protein; NCTC13440_03060; phage(gi24371577)7.12e-51Showinfo_outline
30complement(3034152..3034484)PHAGE_Salmon_ST64B_NC_004313: hypothetical protein; NCTC13440_03062; phage(gi23505494)5.39e-34Showinfo_outline
31complement(3034563..3035345)PHAGE_Cronob_ENT39118_NC_019934: antitermination protein; NCTC13440_03063; phage(gi431811056)9.08e-150Showinfo_outline
32complement(3035342..3035710)PHAGE_Escher_HK639_NC_016158: Rus Holliday junction resolvase; NCTC13440_03064; phage(gi356870665)7.67e-52Showinfo_outline
33complement(3035707..3036087)PHAGE_Erwini_phiEt88_NC_015295: hypothetical protein; NCTC13440_03065; phage(gi327198620)2.31e-46Showinfo_outline
34complement(3036212..3036808)PHAGE_Entero_mEp237_NC_019704: hypothetical protein; NCTC13440_03066; phage(gi435439315)4.11e-119Showinfo_outline
353037648..3038571PHAGE_Entero_HK022_NC_002166: IS903 transposase; NCTC13440_03067; phage(gi9634149)0.0Showinfo_outline
36complement(3039702..3039998)Uncharacterised protein; NCTC13440_030680.0Showinfo_outline
373040406..3041548PHAGE_Klebsi_Matisse_NC_028750: baseplate wedge subunit; NCTC13440_03069; phage(gi100179)7.34e-09Showinfo_outline
383041550..3042233Uncharacterised protein; NCTC13440_030700.0Showinfo_outline
39complement(3042269..3043291)PHAGE_Halovi_HGTV_1_NC_021328: AdoMet-MTase; NCTC13440_03071; phage(gi509140530)1.67e-25Showinfo_outline
40complement(3043381..3043590)PHAGE_Vibrio_pYD38_A_NC_021534: hypothetical protein; NCTC13440_03072; phage(gi514051013)9.79e-41Showinfo_outline
41complement(3043590..3043997)Uncharacterised protein; NCTC13440_030730.0Showinfo_outline
42complement(3043990..3044226)Uncharacterised protein; NCTC13440_030740.0Showinfo_outline
43complement(3044223..3044459)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC13440_03075; phage(gi428782346)1.38e-43Showinfo_outline
44complement(3044452..3044655)PHAGE_Entero_VT2phi_272_NC_028656: hypothetical protein; NCTC13440_03076; phage(gi966197733)1.28e-40Showinfo_outline
45complement(3044652..3045437)PHAGE_Burkho_KS9_NC_013055: chromosome partitioning protein gp35; NCTC13440_03077; phage(gi255033718)2.53e-85Showinfo_outline
46complement(3045430..3045765)PHAGE_Salmon_SPN3UB_NC_019545: putative DNA-binding protein; NCTC13440_03078; phage(gi423262429)2.70e-16Showinfo_outline
47complement(3045773..3046522)PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA replication protein; NCTC13440_03079; phage(gi169257280)3.29e-159Showinfo_outline
48complement(3046525..3047433)PHAGE_Shigel_Stx_NC_029120: primosomal protein I; NCTC13440_03080; phage(gi985761262)1.27e-115Showinfo_outline
49complement(3047724..3048260)PHAGE_Entero_mEp237_NC_019704: CII protein; NCTC13440_03081; phage(gi435439306)8.89e-89Showinfo_outline
503048601..3048996PHAGE_Entero_mEp237_NC_019704: hypothetical protein; NCTC13440_03082; phage(gi435439303)1.12e-66Showinfo_outline
51complement(3049557..3049760)PHAGE_Salmon_118970_sal4_NC_030919: hypothetical protein; NCTC13440_03083; phage(gi100018)6.84e-31Showinfo_outline
523050247..3050438secreted protein; NCTC13440_030840.0Showinfo_outline
533050447..3050602PHAGE_Entero_mEp237_NC_019704: hypothetical protein; NCTC13440_03085; phage(gi435439297)1.80e-18Showinfo_outline
543050740..3053784PHAGE_Entero_mEp237_NC_019704: exonuclease; NCTC13440_03086; phage(gi435439296)0.0Showinfo_outline
553053797..3054276PHAGE_Entero_mEp237_NC_019704: recombinase RecT; NCTC13440_03087; phage(gi435439295)3.71e-33Showinfo_outline
563054365..3055864Transposase and inactivated derivatives; NCTC13440_030880.0Showinfo_outline
573055861..3056616PROPHAGE_Escher_CFT073: transposase/IS protein; NCTC13440_03089; phage(gi26248359)1.21e-37Showinfo_outline
583056705..3057301PHAGE_Entero_mEp237_NC_019704: recombinase RecT; NCTC13440_03090; phage(gi435439295)8.44e-80Showinfo_outline
593057336..3057674Uncharacterised protein; NCTC13440_030910.0Showinfo_outline
603057667..3058278PHAGE_Salmon_ST64T_NC_004348: hypothetical protein; NCTC13440_03092; phage(gi24371543)1.50e-52Showinfo_outline
613058275..3058583PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; NCTC13440_03093; phage(gi401817569)4.35e-35Showinfo_outline
62complement(3059051..3060268)PHAGE_Entero_mEp237_NC_019704: integrase; NCTC13440_03094; phage(gi435439292)5.87e-151Showinfo_outline
633060415..3061305peptide transport system permease protein sapC; NCTC13440_030950.0Showinfo_outline
643061305..3062297PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; NCTC13440_03096; phage(gi371496158)1.75e-09Showinfo_outline
653062299..3063108PHAGE_Bacill_G_NC_023719: gp245; NCTC13440_03097; phage(gi593777701)1.90e-19Showinfo_outline
663077197..3077212attR0.0Showinfo_outline

Region 2, total 54 CDS

#CDS PositionBLAST HitE-ValueSequence
13204067..3204105attL0.0Showinfo_outline
2complement(3209846..3212908)PHAGE_Pseudo_PS_1_NC_029066: tail protein; NCTC13440_03250; phage(gi985757719)2.21e-74Showinfo_outline
3complement(3212905..3213285)PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_030909: hypothetical protein; NCTC13440_03251; phage(gi100020)2.06e-21Showinfo_outline
4complement(3213295..3213777)PHAGE_Pseudo_D3_NC_002484: hypothetical protein; NCTC13440_03252; phage(gi9635614)9.46e-37Showinfo_outline
5complement(3214244..3216688)PHAGE_Entero_mEp235_NC_019708: tail length tape measure protein; NCTC13440_03253; phage(gi428781825)2.93e-174Showinfo_outline
6complement(3217266..3217529)PHAGE_Entero_mEp235_NC_019708: hypothetical protein; NCTC13440_03254; phage(gi428781824)1.09e-10Showinfo_outline
7complement(3217562..3217915)PHAGE_Entero_mEp235_NC_019708: tail assembly chaperone; NCTC13440_03255; phage(gi428781823)5.06e-48Showinfo_outline
8complement(3217959..3218450)PHAGE_Entero_mEp235_NC_019708: major tail subunit; NCTC13440_03256; phage(gi428781822)1.75e-79Showinfo_outline
9complement(3218507..3218872)PHAGE_Entero_mEp235_NC_019708: hypothetical protein; NCTC13440_03257; phage(gi428781821)1.75e-63Showinfo_outline
10complement(3218869..3219408)PHAGE_Entero_mEp235_NC_019708: hypothetical protein; NCTC13440_03258; phage(gi428781820)1.07e-102Showinfo_outline
11complement(3219401..3219733)PHAGE_Entero_mEp235_NC_019708: hypothetical protein; NCTC13440_03259; phage(gi428781819)2.06e-70Showinfo_outline
12complement(3219735..3219932)PHAGE_Entero_mEp235_NC_019708: hypothetical protein; NCTC13440_03260; phage(gi428781818)1.28e-29Showinfo_outline
13complement(3220002..3220319)PHAGE_Shigel_SfII_NC_021857: head-tail connector protein; NCTC13440_03261; phage(gi526244642)2.18e-26Showinfo_outline
14complement(3220397..3221635)PHAGE_Entero_SfV_NC_003444: capsid; NCTC13440_03262; phage(gi19548995)0.0Showinfo_outline
15complement(3221645..3222244)PHAGE_Entero_SfV_NC_003444: capsid protease; NCTC13440_03263; phage(gi19548994)4.19e-119Showinfo_outline
16complement(3222237..3223463)PHAGE_Entero_SfV_NC_003444: portal protein; NCTC13440_03264; phage(gi19548993)0.0Showinfo_outline
17complement(3223453..3223614)membrane protein; NCTC13440_032650.0Showinfo_outline
18complement(3223611..3224402)PHAGE_Entero_mEp235_NC_019708: terminase large subunit; NCTC13440_03266; phage(gi428781812)1.34e-116Showinfo_outline
19complement(3224443..3225363)PHAGE_Entero_mEp235_NC_019708: terminase large subunit; NCTC13440_03267; phage(gi428781812)3.18e-158Showinfo_outline
20complement(3225367..3225864)PHAGE_Entero_mEp235_NC_019708: terminase small subunit; NCTC13440_03268; phage(gi428781811)4.92e-83Showinfo_outline
21complement(3226022..3226372)PHAGE_Entero_mEp235_NC_019708: putative HNH endonuclease; NCTC13440_03269; phage(gi428781871)2.08e-65Showinfo_outline
22complement(3226434..3226679)PHAGE_Salmon_SPN9CC_NC_017985: hypothetical protein; NCTC13440_03270; phage(gi389060534)5.31e-10Showinfo_outline
233226841..3227089Uncharacterised protein; NCTC13440_032710.0Showinfo_outline
24complement(3227129..3227389)PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC13440_03272; phage(gi356870672)1.31e-32Showinfo_outline
25complement(3227386..3227586)PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC13440_03273; phage(gi356870671)3.17e-18Showinfo_outline
26complement(3227531..3227806)PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC13440_03274; phage(gi428782715)3.07e-36Showinfo_outline
27complement(3227814..3228443)PHAGE_Escher_HK639_NC_016158: endochitinase; NCTC13440_03275; phage(gi356870669)4.05e-139Showinfo_outline
28complement(3228443..3228724)PHAGE_Entero_mEp390_NC_019721: putative holin; NCTC13440_03276; phage(gi428782713)2.59e-49Showinfo_outline
29complement(3228711..3229106)PHAGE_Entero_mEp390_NC_019721: putative holin; NCTC13440_03277; phage(gi428782712)1.26e-84Showinfo_outline
30complement(3229267..3229833)PHAGE_Shigel_SfII_NC_021857: hypothetical protein; NCTC13440_03278; phage(gi526244683)3.87e-12Showinfo_outline
31complement(3229846..3230589)Uncharacterised protein; NCTC13440_032790.0Showinfo_outline
32complement(3230913..3231491)PHAGE_Entero_HK629_NC_019711: late gene regulator Q; NCTC13440_03280; phage(gi428782072)1.25e-05Showinfo_outline
33complement(3231505..3232413)PHAGE_Entero_SfV_NC_003444: hypothetical protein; NCTC13440_03281; phage(gi19549032)2.81e-152Showinfo_outline
34complement(3232498..3232875)PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; NCTC13440_03282; phage(gi100062)1.27e-64Showinfo_outline
35complement(3232885..3233694)PHAGE_Salmon_118970_sal3_NC_031940: prohead core protein protease; NCTC13440_03283; phage(gi100061)2.35e-139Showinfo_outline
36complement(3233691..3234659)PHAGE_Shigel_SfII_NC_021857: O protein family protein; NCTC13440_03284; phage(gi526244675)7.83e-165Showinfo_outline
37complement(3235066..3235518)PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC13440_03285; phage(gi428782704)6.68e-94Showinfo_outline
383235912..3236388Uncharacterised protein; NCTC13440_032860.0Showinfo_outline
393236560..3236964Uncharacterized conserved protein; NCTC13440_032870.0Showinfo_outline
40complement(3237004..3237903)PHAGE_Bacill_BMBtpLA_NC_028748: IS5 transposase and trans-activator; NCTC13440_03288; phage(gi971482498)0.0Showinfo_outline
413237982..3238914Uncharacterized conserved protein; NCTC13440_032890.0Showinfo_outline
423239383..3239682PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC13440_03290; phage(gi428782699)2.81e-18Showinfo_outline
433239682..3240467PHAGE_Burkho_KS9_NC_013055: chromosome partitioning protein gp35; NCTC13440_03291; phage(gi255033718)2.40e-84Showinfo_outline
443240464..3240598Uncharacterised protein; NCTC13440_032920.0Showinfo_outline
453240595..3241020PHAGE_Entero_HK97_NC_002167: Gp37; NCTC13440_03293; phage(gi9634184)5.32e-28Showinfo_outline
463241017..3241769PHAGE_Entero_SfI_NC_027339: hypothetical protein; NCTC13440_03294; phage(gi849250256)1.52e-163Showinfo_outline
473241780..3242202Uncharacterised protein; NCTC13440_032950.0Showinfo_outline
483242465..3243244PHAGE_Vibrio_pYD38_A_NC_021534: hypothetical protein; NCTC13440_03296; phage(gi514051012)6.06e-38Showinfo_outline
493243237..3243455PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC13440_03297; phage(gi356870632)1.43e-12Showinfo_outline
503243982..3245124PHAGE_Entero_mEp235_NC_019708: integrase; NCTC13440_03298; phage(gi428781836)4.83e-80Showinfo_outline
513245194..3245232attR0.0Showinfo_outline
52complement(3245238..3246488)Isocitrate dehydrogenase; NCTC13440_032990.0Showinfo_outline
533246729..3247379ribosomal large subunit pseudouridine synthase E; NCTC13440_033000.0Showinfo_outline
543247396..3247854PHAGE_Strept_SF3_NC_028952: hypothetical protein; NCTC13440_03301; phage(gi971759841)5.29e-07Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 5297680 bps
Phages: 2
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download