Submission Results

Sequence Name: Not Available

GenBank Accession Number: UGKY00000000.1

GenInfo (GI) Number: 0000000000

Download Results: UGKY00000000.1.PHASTER.zip

gi|00000000|ref|UGKY00000000.1| Klebsiella pneumoniae strain NCTC5055, whole genome shotgun 4919773, gc%: 53.72%

Download summary as .txt file: summary.txt file_download

Total: 8 prophage regions have been identified, of which 3 regions are intact, 3 regions are incomplete, and 2 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
120.9Kbquestionable7026109-21083 info_outlinePHAGE_Pseudo_PPpW_3_NC_023006(6)51.68%Show info_outline
213.3Kbincomplete301587450-100834 info_outlinePHAGE_Entero_P4_NC_001609(5)49.34%Show info_outline
326.6Kbincomplete30121159939-1186593 info_outlinePHAGE_Entero_P4_NC_001609(6)51.71%Show info_outline
432.8Kbintact120441477407-1510279 info_outlinePHAGE_Edward_GF_2_NC_026611(17)50.67%Show info_outline
519.1Kbintact150223061417-3080589 info_outlinePHAGE_Pseudo_PPpW_3_NC_023006(9)55.18%Show info_outline
617.4Kbincomplete20293084572-3101971 info_outlinePHAGE_Salmon_Fels_1_NC_010391(6)49.35%Show info_outline
710.6Kbquestionable85104109142-4119755 info_outlinePHAGE_Entero_P4_NC_001609(8)49.43%Show info_outline
848.8Kbintact150634522633-4571444 info_outlinePHAGE_Salmon_118970_sal3_NC_031940(14)52.70%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|UGKY00000000.1| Klebsiella pneumoniae strain NCTC5055, whole genome shotgun 4919773, gc%: 53.72%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 28 CDS

#CDS PositionBLAST HitE-ValueSequence
1109..1098PHAGE_Vibrio_VP58.5_NC_027981: gp22 protein; NCTC5055_00001; phage(gi937456093)1.89e-61Showinfo_outline
21095..1601PHAGE_Vibrio_VP58.5_NC_027981: gp23 protein; NCTC5055_00002; phage(gi937456094)1.04e-12Showinfo_outline
32056..2565Uncharacterised protein; NCTC5055_000030.0Showinfo_outline
42740..2847Uncharacterised protein; NCTC5055_000040.0Showinfo_outline
53112..3903Uncharacterised protein; NCTC5055_000050.0Showinfo_outline
63160..3173attL0.0Showinfo_outline
73982..4371PHAGE_Vibrio_VP58.5_NC_027981: gp26 protein; NCTC5055_00006; phage(gi937456097)1.16e-21Showinfo_outline
84562..5677PHAGE_Vibrio_VP58.5_NC_027981: gp28 protein; NCTC5055_00007; phage(gi937456099)5.10e-35Showinfo_outline
95717..6070PHAGE_Vibrio_VP58.5_NC_027981: gp13 protein; NCTC5055_00008; phage(gi937456084)2.33e-25Showinfo_outline
106054..6176Uncharacterised protein; NCTC5055_000090.0Showinfo_outline
116121..6453PHAGE_Escher_vB_EcoM_ECO1230_10_NC_027995: putative phage tail protein; NCTC5055_00010; phage(gi937533298)1.07e-27Showinfo_outline
126410..6973PHAGE_Burkho_ST79_NC_021343: phage baseplate assembly protein J; NCTC5055_00011; phage(gi509141641)3.12e-39Showinfo_outline
136966..7145PHAGE_Vibrio_VP58.5_NC_027981: gp15 protein; NCTC5055_00012; phage(gi937456086)3.79e-06Showinfo_outline
147087..7530PROPHAGE_Salmon_Ty2: putative phage tail protein; NCTC5055_00013; phage(gi29143753)1.06e-19Showinfo_outline
157523..7810PHAGE_Salmon_SEN5_NC_028701: tail fiber protein; NCTC5055_00014; phage(gi966201574)1.42e-12Showinfo_outline
168376..8513Uncharacterised protein; NCTC5055_000150.0Showinfo_outline
179224..9556PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; NCTC5055_00016; phage(gi849255281)5.83e-07Showinfo_outline
18complement(10160..10399)PHAGE_Entero_HK225_NC_019717: DNA damage-inducible protein; NCTC5055_00017; phage(gi428782403)4.85e-45Showinfo_outline
19complement(10460..11566)PHAGE_Entero_mEp460_NC_019716: integrase; NCTC5055_00018; phage(gi428782338)0.0Showinfo_outline
2011967..12494Uncharacterized phage-associated protein; NCTC5055_000190.0Showinfo_outline
21complement(12985..13266)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC5055_00020; phage(gi428782341)3.89e-54Showinfo_outline
22complement(13571..13876)PHAGE_Entero_mEp460_NC_019716: putative exonuclease; NCTC5055_00021; phage(gi428782342)5.22e-50Showinfo_outline
23complement(14354..15001)Uncharacterised protein; NCTC5055_000220.0Showinfo_outline
24complement(14998..15099)Uncharacterised protein; NCTC5055_000230.0Showinfo_outline
25complement(15563..15994)PHAGE_Entero_HK225_NC_019717: hypothetical protein; NCTC5055_00024; phage(gi428782430)7.74e-38Showinfo_outline
26complement(16106..16213)Uncharacterised protein; NCTC5055_000250.0Showinfo_outline
2716429..17763PHAGE_Aurant_AmM_1_NC_027334: DnaA C-terminal domain containing protein; NCTC5055_00026; phage(gi849119914)5.92e-06Showinfo_outline
2821083..21096attR0.0Showinfo_outline

Region 2, total 17 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(87450..88457)PHAGE_Prochl_P_TIM68_NC_028955: putative zinc-containing alcohol dehydrogenase superfamily protein; NCTC5055_00090; phage(gi971760362)2.78e-06Showinfo_outline
288569..89477PHAGE_Burkho_phi1026b_NC_005284: gp58; NCTC5055_00091; phage(gi38707948)8.05e-06Showinfo_outline
389758..89769attL0.0Showinfo_outline
4complement(89885..90583)Uncharacterised protein; NCTC5055_000920.0Showinfo_outline
5complement(90794..93127)PHAGE_Entero_P4_NC_001609: DNA primase; NCTC5055_00093; phage(gi9627512)0.0Showinfo_outline
6complement(93142..93462)PHAGE_Entero_P4_NC_001609: hypothetical protein; NCTC5055_00094; phage(gi9627513)3.44e-66Showinfo_outline
7complement(93459..93686)Uncharacterised protein; NCTC5055_000950.0Showinfo_outline
8complement(94228..94494)PHAGE_Entero_P4_NC_001609: transcriptional regulator; NCTC5055_00098; phage(gi9627517)4.11e-42Showinfo_outline
995033..95776PHAGE_Entero_P4_NC_001609: head size determination protein sid; NCTC5055_00099; phage(gi9627518)1.21e-20Showinfo_outline
1095780..96019PHAGE_Entero_186_NC_001317: B protein; NCTC5055_00100; phage(gi9634083)6.13e-19Showinfo_outline
1196035..96601PHAGE_Entero_P4_NC_001609: amber mutation-suppressing protein; NCTC5055_00101; phage(gi9627520)2.14e-77Showinfo_outline
12complement(96565..96750)Uncharacterised protein; NCTC5055_001020.0Showinfo_outline
1397089..98069Uncharacterised protein; NCTC5055_001030.0Showinfo_outline
1498056..98982PHAGE_Burkho_KS5_NC_015265: gp44; NCTC5055_00104; phage(gi327198042)1.17e-08Showinfo_outline
15complement(98979..99461)Uncharacterised protein; NCTC5055_001050.0Showinfo_outline
16complement(99498..100664)PROPHAGE_Escher_CFT073: putative prophage integrase; NCTC5055_00106; phage(gi26250313)0.0Showinfo_outline
17100834..100845attR0.0Showinfo_outline

Region 3, total 14 CDS

#CDS PositionBLAST HitE-ValueSequence
11159939..1159950attL0.0Showinfo_outline
2complement(1173885..1175090)PHAGE_Clostr_phiCD146_NC_028958: hypothetical protein; NCTC5055_01155; phage(gi971820170)3.97e-08Showinfo_outline
3complement(1175531..1176412)Uncharacterised protein; NCTC5055_011560.0Showinfo_outline
4complement(1176846..1179179)PHAGE_Entero_P4_NC_001609: DNA primase; NCTC5055_01157; phage(gi9627512)0.0Showinfo_outline
5complement(1179194..1179514)PHAGE_Entero_P4_NC_001609: hypothetical protein; NCTC5055_01158; phage(gi9627513)1.95e-66Showinfo_outline
6complement(1179511..1179738)Uncharacterised protein; NCTC5055_011590.0Showinfo_outline
7complement(1180283..1180549)PHAGE_Entero_P4_NC_001609: transcriptional regulator; NCTC5055_01162; phage(gi9627517)3.49e-42Showinfo_outline
81181092..1181895PHAGE_Entero_P4_NC_001609: head size determination protein sid; NCTC5055_01163; phage(gi9627518)2.70e-19Showinfo_outline
91181892..1182134PHAGE_Entero_186_NC_001317: B protein; NCTC5055_01164; phage(gi9634083)7.30e-16Showinfo_outline
101182151..1182726PHAGE_Entero_P4_NC_001609: amber mutation-suppressing protein; NCTC5055_01165; phage(gi9627520)4.67e-48Showinfo_outline
11complement(1183056..1184003)PHAGE_Burkho_KS5_NC_015265: gp44; NCTC5055_01166; phage(gi327198042)4.73e-06Showinfo_outline
12complement(1184000..1184974)Uncharacterised protein; NCTC5055_011670.0Showinfo_outline
13complement(1185216..1186406)PHAGE_Entero_P4_NC_001609: integrase; NCTC5055_01169; phage(gi9627511)8.04e-81Showinfo_outline
141186593..1186604attR0.0Showinfo_outline

Region 4, total 46 CDS

#CDS PositionBLAST HitE-ValueSequence
11477407..1477424attL0.0Showinfo_outline
2complement(1478033..1478761)PHAGE_Klebsi_JD001_NC_020204: hypothetical protein; NCTC5055_01446; phage(gi448245145)1.89e-49Showinfo_outline
3complement(1478761..1478979)PHAGE_Entero_933W_NC_000924: DksA-like zinc finger domain containing protein; NCTC5055_01447; phage(gi9632545)1.97e-27Showinfo_outline
4complement(1479071..1479301)PHAGE_Serrat_Eta_NC_021563: hypothetical protein; NCTC5055_01448; phage(gi514361078)1.32e-08Showinfo_outline
5complement(1479298..1479489)PHAGE_Stx2_c_1717_NC_011357: hypothetical protein; NCTC5055_01449; phage(gi209447135)2.57e-21Showinfo_outline
6complement(1479486..1479686)Uncharacterised protein; NCTC5055_014500.0Showinfo_outline
7complement(1479683..1479901)PHAGE_Entero_Min27_NC_010237: hypothetical protein; NCTC5055_01451; phage(gi170783620)3.35e-06Showinfo_outline
8complement(1479898..1481022)PHAGE_Salmon_9NA_NC_025443: putative DNA methylase; NCTC5055_01452; phage(gi712914017)6.50e-107Showinfo_outline
9complement(1481019..1481171)PHAGE_Entero_lambda_NC_001416: hypothetical protein; NCTC5055_01453; phage(gi9626279)4.75e-09Showinfo_outline
10complement(1481168..1481596)PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC5055_01454; phage(gi356870637)1.17e-93Showinfo_outline
11complement(1481593..1482273)PHAGE_Entero_phi80_NC_021190: phage exonuclease; NCTC5055_01455; phage(gi824479613)2.03e-163Showinfo_outline
12complement(1482270..1483187)PHAGE_Entero_phi80_NC_021190: phage recombinase-annealing protein RecT; NCTC5055_01456; phage(gi824479614)0.0Showinfo_outline
13complement(1483197..1483478)PHAGE_Entero_phi80_NC_021190: host RecBCD/SbcCD enzymes inhibitor; NCTC5055_01457; phage(gi824479615)2.95e-62Showinfo_outline
14complement(1483551..1483760)PHAGE_Entero_phi80_NC_021190: FtsZ inhibitor protein Kil; NCTC5055_01458; phage(gi824479618)2.06e-43Showinfo_outline
15complement(1483757..1483930)PHAGE_Entero_phi80_NC_021190: hypothetical protein; NCTC5055_01459; phage(gi824479620)1.10e-20Showinfo_outline
16complement(1483920..1484771)PHAGE_Strept_Sfi19_NC_000871: hypothetical protein; NCTC5055_01460; phage(gi9632919)6.87e-40Showinfo_outline
171485113..1485334PHAGE_Escher_Av_05_NC_025830: putative head fiber protein; NCTC5055_01461; phage(gi730985069)1.68e-11Showinfo_outline
181485498..1485974PHAGE_Acinet_LZ35_NC_031117: glutaredoxin; NCTC5055_01462; phage(gi100075)2.27e-50Showinfo_outline
191485976..1487634PHAGE_Pectob_ZF40_NC_019522: putative TerL large-subunit terminase; NCTC5055_01463; phage(gi422936681)0.0Showinfo_outline
201487635..1489167PHAGE_Aeromo_vB_AsaM_56_NC_019527: putative portal protein; NCTC5055_01464; phage(gi422937534)2.00e-117Showinfo_outline
211489112..1489909PHAGE_Edward_GF_2_NC_026611: putative head protein; NCTC5055_01465; phage(gi764162251)3.20e-76Showinfo_outline
221489922..1491109PHAGE_Edward_GF_2_NC_026611: hypothetical protein; NCTC5055_01466; phage(gi764162253)4.30e-58Showinfo_outline
231491111..1491593PHAGE_Edward_GF_2_NC_026611: hypothetical protein; NCTC5055_01467; phage(gi764162254)1.76e-48Showinfo_outline
241491593..1492630PHAGE_Burkho_BcepNY3_NC_009604: major capsid protein; NCTC5055_01468; phage(gi149882911)7.27e-98Showinfo_outline
251492634..1492960PHAGE_Acinet_phiAC_1_NC_028995: hypothetical protein; NCTC5055_01469; phage(gi971763816)5.70e-14Showinfo_outline
261492963..1493406PHAGE_Aeromo_vB_AsaM_56_NC_019527: hypothetical protein; NCTC5055_01470; phage(gi422937544)4.60e-29Showinfo_outline
271493409..1493861PHAGE_Edward_GF_2_NC_026611: hypothetical protein; NCTC5055_01471; phage(gi764162258)6.41e-32Showinfo_outline
281493858..1494226PHAGE_Edward_GF_2_NC_026611: hypothetical protein; NCTC5055_01472; phage(gi764162259)1.03e-35Showinfo_outline
291494223..1494774PHAGE_Edward_GF_2_NC_026611: hypothetical protein; NCTC5055_01473; phage(gi764162260)5.39e-15Showinfo_outline
301494775..1496253PHAGE_Edward_GF_2_NC_026611: hypothetical protein; NCTC5055_01474; phage(gi764162261)1.95e-135Showinfo_outline
311496265..1496705PHAGE_Edward_GF_2_NC_026611: hypothetical protein; NCTC5055_01475; phage(gi764162262)4.47e-21Showinfo_outline
321496714..1497118PHAGE_Edward_GF_2_NC_026611: hypothetical protein; NCTC5055_01476; phage(gi764162263)2.79e-20Showinfo_outline
331497330..1499108PHAGE_Edward_GF_2_NC_026611: putative transglycosylase; NCTC5055_01477; phage(gi764162265)4.44e-23Showinfo_outline
341499110..1499913PHAGE_Edward_GF_2_NC_026611: hypothetical protein; NCTC5055_01478; phage(gi764162271)1.69e-42Showinfo_outline
351499913..1500218PHAGE_Edward_GF_2_NC_026611: putative structural protein; NCTC5055_01479; phage(gi764162272)8.06e-27Showinfo_outline
361500215..1501069PHAGE_Edward_GF_2_NC_026611: hypothetical protein; NCTC5055_01480; phage(gi764162273)5.79e-61Showinfo_outline
371501069..1501770PHAGE_Edward_GF_2_NC_026611: putative baseplate protein; NCTC5055_01481; phage(gi764162274)1.47e-48Showinfo_outline
381501807..1502163PHAGE_Edward_GF_2_NC_026611: hypothetical protein; NCTC5055_01482; phage(gi764162275)3.57e-28Showinfo_outline
391502172..1503404PHAGE_Edward_GF_2_NC_026611: hypothetical protein; NCTC5055_01483; phage(gi764162276)6.64e-136Showinfo_outline
401503401..1503988PHAGE_Edward_GF_2_NC_026611: hypothetical protein; NCTC5055_01484; phage(gi764162277)4.94e-49Showinfo_outline
411503990..1505027PHAGE_Burkho_BcepNY3_NC_009604: tail fiber protein; NCTC5055_01485; phage(gi149882931)1.23e-44Showinfo_outline
421505039..1507279PHAGE_Arthro_vB_ArtM_ArV1_NC_026606: putative tail fiber protein; NCTC5055_01486; phage(gi764161624)5.00e-10Showinfo_outline
43complement(1507292..1508638)Uncharacterised protein; NCTC5055_014870.0Showinfo_outline
44complement(1508642..1508830)Uncharacterised protein; NCTC5055_014880.0Showinfo_outline
45complement(1508947..1510002)PHAGE_Salmon_g341c_NC_013059: Integrase; NCTC5055_01489; phage(gi255252699)0.0Showinfo_outline
461510279..1510296attR0.0Showinfo_outline

Region 5, total 22 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(3061417..3061953)PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; NCTC5055_03001; phage(gi849255281)7.66e-47Showinfo_outline
2complement(3061967..3063640)PHAGE_Salmon_SP_004_NC_021774: phage tail fiber protein; NCTC5055_03002; phage(gi526003631)6.12e-80Showinfo_outline
3complement(3063633..3064196)PHAGE_Pseudo_PPpW_3_NC_023006: putative tail protein I; NCTC5055_03003; phage(gi564292495)7.86e-31Showinfo_outline
4complement(3064189..3065106)PHAGE_Pseudo_PPpW_3_NC_023006: putative baseplate J-like protein; NCTC5055_03004; phage(gi564292494)1.24e-75Showinfo_outline
5complement(3065090..3065443)PHAGE_Pseudo_PPpW_3_NC_023006: putative baseplate assembly protein with lysozyme; NCTC5055_03005; phage(gi564292493)4.97e-26Showinfo_outline
6complement(3065483..3066598)PHAGE_Pseudo_PPpW_3_NC_023006: putative transcriptional regulator; NCTC5055_03006; phage(gi564292505)2.10e-34Showinfo_outline
7complement(3066600..3066815)PHAGE_Pseudo_PPpW_3_NC_023006: putative tail protein X; NCTC5055_03007; phage(gi564292504)5.20e-10Showinfo_outline
8complement(3066790..3067260)PHAGE_Pseudo_PPpW_3_NC_023006: putative tail protein GpU; NCTC5055_03008; phage(gi564292503)4.73e-23Showinfo_outline
9complement(3067257..3069104)PHAGE_Entero_HK022_NC_002166: tail length tape measure protein; NCTC5055_03009; phage(gi9634134)2.00e-06Showinfo_outline
10complement(3069207..3069506)PHAGE_Pseudo_PPpW_3_NC_023006: hypothetical protein; NCTC5055_03010; phage(gi564292501)8.84e-05Showinfo_outline
11complement(3069558..3070064)PHAGE_Pseudo_PPpW_3_NC_023006: putative tail tube protein; NCTC5055_03011; phage(gi564292500)7.74e-19Showinfo_outline
12complement(3070061..3071530)PROPHAGE_Xylell_Temecula1: contractile tail sheath protein; NCTC5055_03012; phage(gi28198986)1.15e-74Showinfo_outline
13complement(3071569..3072186)PHAGE_Pseudo_phiCTX_NC_003278: predicted baseplate; NCTC5055_03013; phage(gi17313235)1.70e-19Showinfo_outline
14complement(3072179..3072733)Uncharacterised protein; NCTC5055_030140.0Showinfo_outline
15complement(3072745..3073401)PHAGE_Pseudo_PPpW_3_NC_023006: putative minor tail protein Z; NCTC5055_03015; phage(gi564292490)2.19e-18Showinfo_outline
16complement(3073403..3073759)PHAGE_Entero_phi80_NC_021190: head-tail joining protein; NCTC5055_03016; phage(gi824479589)5.04e-05Showinfo_outline
17complement(3073759..3074094)PHAGE_Entero_c_1_NC_019706: hypothetical protein; NCTC5055_03017; phage(gi428781741)1.40e-23Showinfo_outline
18complement(3074165..3076273)PHAGE_Entero_c_1_NC_019706: head maturation protease; NCTC5055_03018; phage(gi428781740)0.0Showinfo_outline
19complement(3076227..3077741)PHAGE_Entero_mEp460_NC_019716: portal protein; NCTC5055_03019; phage(gi428782320)0.0Showinfo_outline
20complement(3077750..3077965)Uncharacterised protein; NCTC5055_030200.0Showinfo_outline
21complement(3077962..3080079)PHAGE_Entero_cdtI_NC_009514: putative large terminase subunit; NCTC5055_03021; phage(gi148609384)0.0Showinfo_outline
22complement(3080083..3080589)PHAGE_Entero_c_1_NC_019706: terminase small subunit; NCTC5055_03022; phage(gi428781736)3.02e-66Showinfo_outline

Region 6, total 31 CDS

#CDS PositionBLAST HitE-ValueSequence
13084572..3084583attL0.0Showinfo_outline
2complement(3084609..3084878)PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC5055_03029; phage(gi428782715)3.60e-40Showinfo_outline
3complement(3084886..3085515)PHAGE_Escher_HK639_NC_016158: endochitinase; NCTC5055_03030; phage(gi356870669)5.83e-128Showinfo_outline
4complement(3085652..3085930)PHAGE_Entero_mEp390_NC_019721: putative holin; NCTC5055_03031; phage(gi428782713)3.99e-43Showinfo_outline
5complement(3085920..3086309)PHAGE_Entero_mEp390_NC_019721: putative holin; NCTC5055_03032; phage(gi428782712)2.73e-43Showinfo_outline
6complement(3087583..3087960)PHAGE_Salmon_118970_sal4_NC_030919: hypothetical protein; NCTC5055_03034; phage(gi100042)5.49e-52Showinfo_outline
7complement(3088252..3089067)PHAGE_Salmon_Fels_1_NC_010391: bacteriophage antitermination protein Q; NCTC5055_03035; phage(gi169257178)1.74e-175Showinfo_outline
8complement(3089064..3089246)PHAGE_Serrat_Eta_NC_021563: hypothetical protein; NCTC5055_03036; phage(gi514361083)1.86e-07Showinfo_outline
9complement(3089246..3089581)Uncharacterised protein; NCTC5055_030370.0Showinfo_outline
10complement(3089581..3091455)PHAGE_Salmon_SEN22_NC_028696: DNA primase/helicase; NCTC5055_03038; phage(gi966201355)0.0Showinfo_outline
11complement(3091455..3091562)PHAGE_Salmon_g341c_NC_013059: hypothetical protein; NCTC5055_03039; phage(gi255252729)7.44e-06Showinfo_outline
12complement(3091562..3092497)PHAGE_Entero_phiP27_NC_003356: hypothetical protein; NCTC5055_03040; phage(gi18249881)8.33e-58Showinfo_outline
13complement(3092494..3092859)PHAGE_Pseudo_AF_NC_019923: putative HNH endonuclease; NCTC5055_03041; phage(gi431810340)1.40e-23Showinfo_outline
14complement(3092856..3093053)PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; NCTC5055_03042; phage(gi100119)1.33e-08Showinfo_outline
15complement(3093055..3093297)PHAGE_Salmon_SPN3UB_NC_019545: putative Cro; NCTC5055_03043; phage(gi423262425)1.85e-22Showinfo_outline
163093374..3093829PHAGE_Salmon_SPN3UB_NC_019545: putative CI; NCTC5055_03044; phage(gi423262424)9.92e-18Showinfo_outline
173093970..3094644PHAGE_Entero_phiP27_NC_003356: hypothetical protein; NCTC5055_03045; phage(gi18249874)2.38e-07Showinfo_outline
183094637..3095035Uncharacterised protein; NCTC5055_030460.0Showinfo_outline
193095023..3095154Uncharacterised protein; NCTC5055_030470.0Showinfo_outline
203095442..3095669Uncharacterised protein; NCTC5055_030480.0Showinfo_outline
213095650..3095997PHAGE_Salmon_Fels_1_NC_010391: hypothetical protein; NCTC5055_03049; phage(gi169257166)5.57e-06Showinfo_outline
223096189..3096623PHAGE_Salmon_Fels_1_NC_010391: hypothetical protein; NCTC5055_03050; phage(gi169257164)1.85e-45Showinfo_outline
233096604..3097182PHAGE_Entero_phiP27_NC_003356: hypothetical protein; NCTC5055_03051; phage(gi18249870)7.43e-61Showinfo_outline
243097195..3097773PHAGE_Shewan_1/41_NC_025458: DNA polymerase III beta subunit; NCTC5055_03052; phage(gi712915574)1.42e-17Showinfo_outline
253097770..3098057PHAGE_Salmon_Fels_1_NC_010391: hypothetical protein; NCTC5055_03053; phage(gi169257160)1.33e-24Showinfo_outline
263098057..3098431Uncharacterised protein; NCTC5055_030540.0Showinfo_outline
273098649..3098888PHAGE_Salmon_Fels_1_NC_010391: putative bacteriophage excisionase; NCTC5055_03055; phage(gi169257157)3.79e-31Showinfo_outline
283098941..3100239PHAGE_Salmon_Fels_1_NC_010391: putative bacteriophage integrase; NCTC5055_03056; phage(gi169257156)0.0Showinfo_outline
293100335..3100850lipoprotein; NCTC5055_030570.0Showinfo_outline
303101201..3101212attR0.0Showinfo_outline
313101243..3101971PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; NCTC5055_03058; phage(gi371496158)2.12e-36Showinfo_outline

Region 7, total 12 CDS

#CDS PositionBLAST HitE-ValueSequence
14109142..4109155attL0.0Showinfo_outline
2complement(4109685..4112018)PHAGE_Entero_P4_NC_001609: DNA primase; NCTC5055_04001; phage(gi9627512)0.0Showinfo_outline
3complement(4112033..4112353)PHAGE_Entero_P4_NC_001609: hypothetical protein; NCTC5055_04002; phage(gi9627513)1.96e-67Showinfo_outline
4complement(4112350..4112577)Uncharacterised protein; NCTC5055_040030.0Showinfo_outline
5complement(4113122..4113388)PHAGE_Entero_P4_NC_001609: transcriptional regulator; NCTC5055_04006; phage(gi9627517)4.11e-42Showinfo_outline
64113929..4114672PHAGE_Entero_P4_NC_001609: head size determination protein sid; NCTC5055_04007; phage(gi9627518)2.65e-22Showinfo_outline
74114676..4114915PHAGE_Entero_186_NC_001317: B protein; NCTC5055_04008; phage(gi9634083)3.41e-19Showinfo_outline
84114931..4115497PHAGE_Entero_P4_NC_001609: amber mutation-suppressing protein; NCTC5055_04009; phage(gi9627520)4.52e-79Showinfo_outline
94116321..4117388PHAGE_Entero_P4_NC_001609: hypothetical protein; NCTC5055_04010; phage(gi9627509)0.0Showinfo_outline
10complement(4117416..4118210)PHAGE_Entero_P4_NC_001609: hypothetical protein; NCTC5055_04011; phage(gi9627510)0.0Showinfo_outline
11complement(4118317..4119585)PHAGE_Entero_P4_NC_001609: integrase; NCTC5055_04012; phage(gi9627511)0.0Showinfo_outline
124119755..4119768attR0.0Showinfo_outline

Region 8, total 66 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(4522633..4524048)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; NCTC5055_04425; phage(gi100115)0.0Showinfo_outline
24524130..4525113quinone oxidoreductase; NCTC5055_044260.0Showinfo_outline
3complement(4525290..4525532)inner membrane protein; NCTC5055_044270.0Showinfo_outline
4complement(4525695..4526732)tRNA dihydrouridine synthase A; NCTC5055_044280.0Showinfo_outline
54526762..4526773attL0.0Showinfo_outline
64526820..4527917PHAGE_Entero_mEp460_NC_019716: integrase; NCTC5055_04429; phage(gi428782338)0.0Showinfo_outline
74527986..4528225PHAGE_Entero_HK225_NC_019717: DNA damage-inducible protein; NCTC5055_04430; phage(gi428782403)4.85e-45Showinfo_outline
84528222..4528461Uncharacterised protein; NCTC5055_044310.0Showinfo_outline
9complement(4528608..4529159)PHAGE_Salmon_SP_004_NC_021774: tail fiber assembly protein; NCTC5055_04432; phage(gi526003632)1.76e-53Showinfo_outline
10complement(4529173..4530846)PHAGE_Salmon_SP_004_NC_021774: phage tail fiber protein; NCTC5055_04433; phage(gi526003631)6.12e-80Showinfo_outline
11complement(4530839..4531402)PHAGE_Salmon_RE_2010_NC_019488: tail protein I; NCTC5055_04434; phage(gi418489712)5.45e-31Showinfo_outline
12complement(4531395..4532312)PHAGE_Escher_vB_EcoM_ECO1230_10_NC_027995: putative phage tail protein; NCTC5055_04435; phage(gi937533298)6.08e-83Showinfo_outline
13complement(4532296..4532649)PHAGE_Pseudo_PPpW_3_NC_023006: putative baseplate assembly protein with lysozyme; NCTC5055_04436; phage(gi564292493)4.97e-26Showinfo_outline
14complement(4532689..4533804)PHAGE_Vibrio_vB_VpaM_MAR_NC_019722: putative tail protein; NCTC5055_04437; phage(gi428782753)5.10e-35Showinfo_outline
15complement(4533806..4534021)PHAGE_Escher_vB_EcoM_ECO1230_10_NC_027995: putative phage tail protein; NCTC5055_04438; phage(gi937533287)6.35e-11Showinfo_outline
16complement(4533996..4534466)PHAGE_Pseudo_PPpW_3_NC_023006: putative tail protein GpU; NCTC5055_04439; phage(gi564292503)4.73e-23Showinfo_outline
17complement(4534463..4536310)PHAGE_Entero_HK022_NC_002166: tail length tape measure protein; NCTC5055_04440; phage(gi9634134)2.00e-06Showinfo_outline
18complement(4536413..4536712)PHAGE_Burkho_BcepMu_NC_005882: gp41; NCTC5055_04441; phage(gi48696951)4.01e-05Showinfo_outline
19complement(4536764..4537270)PHAGE_Pseudo_PPpW_3_NC_023006: putative tail tube protein; NCTC5055_04442; phage(gi564292500)7.74e-19Showinfo_outline
20complement(4537267..4538736)PROPHAGE_Xylell_Temecula1: contractile tail sheath protein; NCTC5055_04443; phage(gi28198986)1.15e-74Showinfo_outline
21complement(4538775..4539392)PHAGE_Pseudo_phiCTX_NC_003278: predicted baseplate; NCTC5055_04444; phage(gi17313235)1.70e-19Showinfo_outline
22complement(4539385..4539939)Uncharacterised protein; NCTC5055_044450.0Showinfo_outline
23complement(4539951..4540607)PHAGE_Pseudo_PPpW_3_NC_023006: putative minor tail protein Z; NCTC5055_04446; phage(gi564292490)4.55e-18Showinfo_outline
24complement(4540609..4540965)PHAGE_Entero_phi80_NC_021190: head-tail joining protein; NCTC5055_04447; phage(gi824479589)5.59e-05Showinfo_outline
25complement(4540965..4541300)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC5055_04448; phage(gi428782322)1.37e-13Showinfo_outline
26complement(4541370..4543478)PHAGE_Entero_c_1_NC_019706: head maturation protease; NCTC5055_04449; phage(gi428781740)0.0Showinfo_outline
27complement(4543462..4544946)PHAGE_Entero_mEp460_NC_019716: portal protein; NCTC5055_04450; phage(gi428782320)0.0Showinfo_outline
28complement(4544955..4545170)Uncharacterised protein; NCTC5055_044510.0Showinfo_outline
29complement(4545167..4547284)PHAGE_Entero_mEp460_NC_019716: terminase large subunit; NCTC5055_04452; phage(gi428782318)0.0Showinfo_outline
30complement(4547288..4547794)PHAGE_Entero_mEp460_NC_019716: terminase small subunit; NCTC5055_04453; phage(gi428782317)8.30e-57Showinfo_outline
31complement(4548019..4548360)Uncharacterised protein; NCTC5055_044540.0Showinfo_outline
32complement(4548494..4548748)Uncharacterised protein; NCTC5055_044550.0Showinfo_outline
33complement(4548968..4549585)PHAGE_Salmon_ST64B_NC_004313: lytic enzyme (putative glycohydrolase); NCTC5055_04456; phage(gi23505496)9.80e-123Showinfo_outline
34complement(4549585..4549866)PHAGE_Entero_mEp390_NC_019721: putative holin; NCTC5055_04457; phage(gi428782713)2.54e-26Showinfo_outline
35complement(4549853..4550239)PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; NCTC5055_04458; phage(gi100130)1.15e-76Showinfo_outline
36complement(4550386..4551438)PHAGE_Entero_mEp460_NC_019716: DNA methylase; NCTC5055_04459; phage(gi428782369)0.0Showinfo_outline
37complement(4551589..4551780)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC5055_04460; phage(gi428782368)4.03e-10Showinfo_outline
38complement(4552021..4552710)PHAGE_Cronob_phiES15_NC_018454: putative antitermination protein Q; NCTC5055_04461; phage(gi401817583)1.37e-30Showinfo_outline
39complement(4552732..4553778)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC5055_04462; phage(gi428782365)2.48e-144Showinfo_outline
40complement(4553775..4555730)PHAGE_Pectob_ZF40_NC_019522: putative methylase; NCTC5055_04463; phage(gi422936661)0.0Showinfo_outline
41complement(4555723..4556601)PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; NCTC5055_04464; phage(gi100124)3.41e-154Showinfo_outline
42complement(4556598..4557590)PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; NCTC5055_04465; phage(gi100059)0.0Showinfo_outline
43complement(4557587..4557766)Uncharacterised protein; NCTC5055_044660.0Showinfo_outline
44complement(4557768..4558481)PHAGE_Aggreg_S1249_NC_013597: hypothetical protein; NCTC5055_04467; phage(gi100047)3.76e-55Showinfo_outline
45complement(4558651..4559202)PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; NCTC5055_04468; phage(gi100118)4.68e-83Showinfo_outline
46complement(4559247..4559441)PHAGE_Entero_mEp390_NC_019721: prophage anti-repressor; NCTC5055_04469; phage(gi428782702)4.91e-08Showinfo_outline
474559543..4560169PHAGE_Entero_mEp235_NC_019708: prophage repressor; NCTC5055_04470; phage(gi428781850)2.04e-58Showinfo_outline
484560768..4561139PHAGE_Salmon_ST64B_NC_004313: hypothetical protein; NCTC5055_04471; phage(gi23505481)2.57e-79Showinfo_outline
494561196..4562023PHAGE_Salmon_118970_sal3_NC_031940: rI antiholin; NCTC5055_04472; phage(gi100112)1.33e-151Showinfo_outline
504562152..4562691PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC5055_04473; phage(gi428782349)2.17e-82Showinfo_outline
514562688..4562855Uncharacterised protein; NCTC5055_044740.0Showinfo_outline
524563102..4563593Uncharacterised protein; NCTC5055_044750.0Showinfo_outline
534563590..4564243PHAGE_Entero_HK225_NC_019717: hypothetical protein; NCTC5055_04476; phage(gi428782430)6.03e-37Showinfo_outline
544564246..4564563PHAGE_Edward_GF_2_NC_026611: hypothetical protein; NCTC5055_04477; phage(gi764162289)6.24e-52Showinfo_outline
554564563..4564808PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; NCTC5055_04478; phage(gi100091)3.86e-26Showinfo_outline
564564805..4565551Uncharacterised protein; NCTC5055_044790.0Showinfo_outline
574565548..4565925PHAGE_Salmon_SPN3UB_NC_019545: putative Eaa protein; NCTC5055_04480; phage(gi423262432)3.85e-31Showinfo_outline
584565927..4566232PHAGE_Entero_mEp460_NC_019716: putative exonuclease; NCTC5055_04481; phage(gi428782342)5.22e-50Showinfo_outline
594566537..4566809PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC5055_04482; phage(gi428782341)2.87e-54Showinfo_outline
60complement(4566844..4567305)Uncharacterised protein; NCTC5055_044830.0Showinfo_outline
61complement(4567311..4567838)Uncharacterized phage-associated protein; NCTC5055_044840.0Showinfo_outline
624567983..4567994attR0.0Showinfo_outline
634568265..4568780zinc uptake transcriptional repressor; NCTC5055_044850.0Showinfo_outline
64complement(4568874..4569086)putative stress-response protein; NCTC5055_044860.0Showinfo_outline
65complement(4569221..4570540)DNA-damage-inducible SOS response protein; NCTC5055_044870.0Showinfo_outline
66complement(4570836..4571444)PHAGE_Entero_mEp460_NC_019716: LexA DNA binding domain protein; NCTC5055_04488; phage(gi428782362)3.16e-16Showinfo_outline
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Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 4919773 bps
Phages: 8
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download