Submission Results

Sequence Name: Not Available

GenBank Accession Number: UGLE00000000.1

GenInfo (GI) Number: 0000000000

Download Results: UGLE00000000.1.PHASTER.zip

gi|00000000|ref|UGLE00000000.1| Klebsiella pneumoniae strain NCTC8895, whole genome shotgun 5423896, gc%: 56.85%

Download summary as .txt file: summary.txt file_download

Total: 8 prophage regions have been identified, of which 4 regions are intact, 2 regions are incomplete, and 2 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
124.8Kbquestionable801890319-115174 info_outlinePHAGE_Entero_P1_NC_005856(4)46.80%Show info_outline
245Kbintact15028351514-396605 info_outlinePHAGE_Entero_P1_NC_005856(3)50.61%Show info_outline
311.6Kbincomplete408400382-412079 info_outlinePHAGE_Entero_933W_NC_000924(2)49.35%Show info_outline
417.3Kbquestionable8017949378-966681 info_outlinePHAGE_Entero_P4_NC_001609(5)51.68%Show info_outline
535.2Kbintact140481446761-1482015 info_outlinePHAGE_Vibrio_12B12_NC_021070(30)53.66%Show info_outline
615.5Kbincomplete60182105811-2121362 info_outlinePHAGE_Salmon_RE_2010_NC_019488(6)50.05%Show info_outline
753.9Kbintact140684140818-4194789 info_outlinePHAGE_Phage_Gifsy_1_NC_010392(11)52.03%Show info_outline
839.7Kbintact150474742233-4781959 info_outlinePHAGE_Entero_WPhi_NC_005056(17)53.02%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|UGLE00000000.1| Klebsiella pneumoniae strain NCTC8895, whole genome shotgun 5423896, gc%: 56.85%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 22 CDS

#CDS PositionBLAST HitE-ValueSequence
190319..90330attL0.0Showinfo_outline
2complement(96098..97561)PHAGE_Staphy_phiN315_NC_004740: probable ss-1,3-N-acetylglucosaminyltransferase; NCTC8895_00119; phage(gi30043988)5.39e-09Showinfo_outline
3complement(97565..98830)PHAGE_Staphy_phiN315_NC_004740: probable ss-1,3-N-acetylglucosaminyltransferase; NCTC8895_00120; phage(gi30043988)2.84e-09Showinfo_outline
499219..100049PROPHAGE_Escher_MG1655: IS5 transposase and trans-activator; NCTC8895_00121; phage(gi16129935)0.0Showinfo_outline
5100872..100884attL0.0Showinfo_outline
6101073..101441site-specific recombinase, phage integrase family; NCTC8895_001220.0Showinfo_outline
7101580..101592attR0.0Showinfo_outline
8101596..101712site-specific recombinase, phage integrase family; NCTC8895_001230.0Showinfo_outline
9complement(102534..103544)PHAGE_Entero_P1_NC_005856: RepA; NCTC8895_00124; phage(gi46401683)2.34e-89Showinfo_outline
10104274..105440PHAGE_Klebsi_phiKO2_NC_005857: plasmid partition protein SopA; NCTC8895_00125; phage(gi46402111)0.0Showinfo_outline
11105440..106411PHAGE_Entero_P1_NC_005856: ParB; NCTC8895_00126; phage(gi46401681)4.59e-11Showinfo_outline
12complement(107002..107154)RelB/StbD; NCTC8895_001270.0Showinfo_outline
13complement(107233..107739)PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; NCTC8895_00128; phage(gi431811050)6.88e-69Showinfo_outline
14complement(107818..108240)PROPHAGE_Ralsto_GMI1000: ISRSO12-transposase ORFB protein; NCTC8895_00129; phage(gi17546158)6.64e-59Showinfo_outline
15108813..109829PROPHAGE_Shewan_MR-1: IS110 family transposase; NCTC8895_00131; phage(gi24375433)2.30e-71Showinfo_outline
16complement(109957..110169)PROPHAGE_Ralsto_GMI1000: isrso12-transposase orfa protein; NCTC8895_00132; phage(gi17546157)1.06e-15Showinfo_outline
17110301..110573PHAGE_Entero_P1_NC_005856: InsA; NCTC8895_00133; phage(gi46401643)8.00e-21Showinfo_outline
18complement(111346..111999)uncharacterised protein encoded within prophage; NCTC8895_001340.0Showinfo_outline
19113495..113872PHAGE_Entero_P1_NC_005856: InsB; NCTC8895_00135; phage(gi46401642)2.67e-83Showinfo_outline
20113903..114199transposase Tn3 family protein; NCTC8895_001360.0Showinfo_outline
21complement(114882..115037)PHAGE_Entero_933W_NC_000924: host killer protein; NCTC8895_00137; phage(gi9632541)2.64e-06Showinfo_outline
22115174..115185attR0.0Showinfo_outline

Region 2, total 32 CDS

#CDS PositionBLAST HitE-ValueSequence
1351514..351526attL0.0Showinfo_outline
2complement(355955..357181)PHAGE_Entero_If1_NC_001954: hypothetical protein; NCTC8895_00387; phage(gi9630756)0.0Showinfo_outline
3357240..357644PROPHAGE_Escher_Sakai: putative transposase; NCTC8895_00388; phage(gi15834436)6.55e-41Showinfo_outline
4358076..358789IncFII RepA protein family; NCTC8895_003900.0Showinfo_outline
5359642..359971PHAGE_Entero_N15_NC_001901: gp49; NCTC8895_00391; phage(gi9630516)2.30e-24Showinfo_outline
6359952..360233PHAGE_Klebsi_phiKO2_NC_005857: Gp48; NCTC8895_00392; phage(gi46402134)6.04e-16Showinfo_outline
7360893..361270PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC8895_00393; phage(gi557307573)1.94e-82Showinfo_outline
8complement(361264..361632)PHAGE_Prochl_Syn1_NC_015288: SpeD; NCTC8895_00394; phage(gi326784204)3.80e-13Showinfo_outline
9362325..362972PHAGE_Escher_pro483_NC_028943: DNA invertase; NCTC8895_00395; phage(gi971758535)1.75e-33Showinfo_outline
10362969..363928PHAGE_Sodali_phiSG1_NC_007902: transposase; NCTC8895_00396; phage(gi89886005)3.54e-114Showinfo_outline
11364325..364570Uncharacterised protein; NCTC8895_003970.0Showinfo_outline
12364970..365590PROPHAGE_Escher_CFT073: insertion element IS2 transposase InsD; NCTC8895_00398; phage(gi26249446)1.92e-145Showinfo_outline
13complement(365430..365768)PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; NCTC8895_00399; phage(gi41057343)2.56e-32Showinfo_outline
14complement(365957..366259)PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; NCTC8895_00400; phage(gi24373865)1.91e-09Showinfo_outline
15366490..368487secondary glycine betaine transporter BetU; NCTC8895_004010.0Showinfo_outline
16complement(368759..369841)PROPHAGE_Escher_CFT073: transposase; NCTC8895_00402; phage(gi26246249)0.0Showinfo_outline
17complement(369877..371088)Putative transposase; NCTC8895_004030.0Showinfo_outline
18complement(371069..371341)Uncharacterised protein; NCTC8895_004040.0Showinfo_outline
19371821..372747putative PhoPQ-activated integral membrane protein; NCTC8895_004050.0Showinfo_outline
20372748..372760attL0.0Showinfo_outline
21complement(372858..373718)conserved hypothetical signal peptide protein; NCTC8895_004060.0Showinfo_outline
22complement(373825..374442)PHAGE_Entero_phi80_NC_021190: DNA invertase, resolvase, site-specific recombinase Pin; NCTC8895_00407; phage(gi824479608)3.83e-28Showinfo_outline
23complement(374561..375301)PROPHAGE_Xantho_33913: Tn5041 transposase; NCTC8895_00408; phage(gi21231545)1.18e-27Showinfo_outline
24375414..376634PROPHAGE_Escher_CFT073: transposase; NCTC8895_00409; phage(gi26249432)2.28e-60Showinfo_outline
25complement(376869..377483)Protein of uncharacterised function (DUF2913); NCTC8895_004100.0Showinfo_outline
26complement(377512..378444)PROPHAGE_Escher_MG1655: predicted transposase; NCTC8895_00411; phage(gi16131287)2.29e-115Showinfo_outline
27378611..378623attR0.0Showinfo_outline
28378775..380058Putative transposase; NCTC8895_004120.0Showinfo_outline
29380570..381445PHAGE_Entero_P1_NC_005856: RepA; NCTC8895_00413; phage(gi46401683)3.72e-109Showinfo_outline
30382078..382704PHAGE_Sodali_phiSG1_NC_007902: ParA-like protein; NCTC8895_00414; phage(gi89886027)1.10e-30Showinfo_outline
31complement(383443..384237)PHAGE_Mycoba_Squirty_NC_026588: non-functional integrase; NCTC8895_00415; phage(gi764159894)4.77e-07Showinfo_outline
32396605..396617attR0.0Showinfo_outline

Region 3, total 8 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(400382..404473)PROPHAGE_Escher_CFT073: Pic serine protease precursor; NCTC8895_00435; phage(gi26246250)0.0Showinfo_outline
2complement(404629..405006)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC8895_00436; phage(gi557307573)5.50e-80Showinfo_outline
3405612..405851RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE); NCTC8895_004370.0Showinfo_outline
4405851..406138RelE/StbE replicon stabilization toxin; NCTC8895_004380.0Showinfo_outline
5406210..406368PHAGE_Entero_933W_NC_000924: host killer protein; NCTC8895_00439; phage(gi9632541)2.87e-08Showinfo_outline
6complement(407484..408059)PHAGE_Ralsto_RSM3_NC_011399: hypothetical protein; NCTC8895_00440; phage(gi209901327)8.36e-62Showinfo_outline
7408111..409136PHAGE_Entero_DT57C_NC_027356: putative helicase; NCTC8895_00441; phage(gi849253264)1.21e-20Showinfo_outline
8409158..412079PROPHAGE_Xantho_33913: Tn5041 transposase; NCTC8895_00442; phage(gi21231545)1.17e-30Showinfo_outline

Region 4, total 17 CDS

#CDS PositionBLAST HitE-ValueSequence
1949378..950727PHAGE_Entero_P4_NC_001609: integrase; NCTC8895_00970; phage(gi9627511)0.0Showinfo_outline
2950758..951108Uncharacterised protein; NCTC8895_009710.0Showinfo_outline
3951108..951395Uncharacterised protein; NCTC8895_009720.0Showinfo_outline
4951766..951996PHAGE_Stenot_S1_NC_011589: putative repressor protein; NCTC8895_00973; phage(gi213163928)8.05e-09Showinfo_outline
5951962..952642PHAGE_Entero_P4_NC_001609: putative CI repressor; NCTC8895_00974; phage(gi9627516)5.77e-08Showinfo_outline
6952635..952994Uncharacterised protein; NCTC8895_009750.0Showinfo_outline
7953026..953310Uncharacterised protein; NCTC8895_009760.0Showinfo_outline
8953307..953690PHAGE_Entero_P4_NC_001609: hypothetical protein; NCTC8895_00977; phage(gi9627513)5.16e-12Showinfo_outline
9953687..956359PHAGE_Entero_P4_NC_001609: DNA primase; NCTC8895_00978; phage(gi9627512)6.05e-43Showinfo_outline
10956760..957521PHAGE_Entero_P4_NC_001609: head size determination protein sid; NCTC8895_00979; phage(gi9627518)3.80e-08Showinfo_outline
11957521..957793PHAGE_Entero_PsP3_NC_005340: Pag; NCTC8895_00980; phage(gi41057379)1.50e-11Showinfo_outline
12958170..958481PHAGE_Salmon_Fels_2_NC_010463: P2 gpE-like tail protein; NCTC8895_00981; phage(gi169936023)1.84e-40Showinfo_outline
13958481..958615PHAGE_Salmon_RE_2010_NC_019488: tail protein E'; NCTC8895_00982; phage(gi418489723)2.84e-18Showinfo_outline
14958608..960368PHAGE_Entero_SfV_NC_003444: tail protein; NCTC8895_00983; phage(gi19549004)2.73e-99Showinfo_outline
15960328..961275PHAGE_Salmon_Fels_2_NC_010463: P2 gpT-like tail protein; NCTC8895_00984; phage(gi169936021)1.84e-37Showinfo_outline
16961669..962934PROPHAGE_Escher_CFT073: prophage P4 integrase; NCTC8895_00985; phage(gi26251024)0.0Showinfo_outline
17963169..966681PHAGE_Entero_EFC_1_NC_025453: DEAD/DEAH box helicase; NCTC8895_00986; phage(gi725950530)2.02e-17Showinfo_outline

Region 5, total 48 CDS

#CDS PositionBLAST HitE-ValueSequence
11446761..1446985PHAGE_Vibrio_12B12_NC_021070: DNA-binding protein Ner; NCTC8895_01455; phage(gi481019194)4.04e-20Showinfo_outline
21446988..1449081PROPHAGE_Escher_Sakai: phage transposase; NCTC8895_01456; phage(gi15834199)0.0Showinfo_outline
31449118..1450065PHAGE_Vibrio_12B12_NC_021070: DNA transposition protein; NCTC8895_01457; phage(gi481019192)2.19e-105Showinfo_outline
41450070..1450309PHAGE_Escher_D108_NC_013594: Kil; NCTC8895_01458; phage(gi281199649)3.57e-19Showinfo_outline
51450312..1450569PHAGE_Pseudo_JBD93_NC_030918: hypothetical protein; NCTC8895_01459; phage(gi100013)1.85e-22Showinfo_outline
61450579..1450866PHAGE_Escher_D108_NC_013594: hypothetical protein; NCTC8895_01460; phage(gi281199653)3.91e-25Showinfo_outline
71450882..1451499PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC8895_01461; phage(gi481019189)2.15e-86Showinfo_outline
81451580..1452077PHAGE_Cellul_phi10:1_NC_021802: nucleoside triphosphate pyrophosphohydrolase; NCTC8895_01462; phage(gi526178125)4.73e-09Showinfo_outline
91452074..1452628PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC8895_01463; phage(gi481019180)1.65e-26Showinfo_outline
101452625..1452726Uncharacterised protein; NCTC8895_014640.0Showinfo_outline
111452711..1453016PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC8895_01465; phage(gi481019179)9.95e-17Showinfo_outline
121453022..1453342Uncharacterised protein; NCTC8895_014660.0Showinfo_outline
131453437..1454018PHAGE_Pantoe_LIMEzero_NC_015585: hypothetical protein; NCTC8895_01467; phage(gi338827197)8.33e-23Showinfo_outline
141454231..1454638Uncharacterised protein; NCTC8895_014680.0Showinfo_outline
151454626..1455231PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC8895_01469; phage(gi481019175)1.75e-35Showinfo_outline
161455228..1455458PHAGE_Vibrio_12B12_NC_021070: C4-type zinc finger protein; NCTC8895_01470; phage(gi481019174)2.78e-11Showinfo_outline
171455439..1455741PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC8895_01471; phage(gi481019173)5.20e-15Showinfo_outline
181455751..1456038PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC8895_01472; phage(gi481019172)4.01e-36Showinfo_outline
191456038..1456313Uncharacterised protein; NCTC8895_014730.0Showinfo_outline
201456310..1456888PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC8895_01474; phage(gi481019171)1.45e-71Showinfo_outline
211456888..1458474PHAGE_Vibrio_12B12_NC_021070: portal protein; NCTC8895_01475; phage(gi481019169)0.0Showinfo_outline
221458474..1460045PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC8895_01476; phage(gi481019168)0.0Showinfo_outline
231460038..1460877PHAGE_Vibrio_12B12_NC_021070: F protein; NCTC8895_01477; phage(gi481019167)8.75e-107Showinfo_outline
241461088..1462056PHAGE_Vibrio_12B12_NC_021070: I protein; NCTC8895_01478; phage(gi481019166)7.28e-94Showinfo_outline
251462059..1462970PHAGE_Vibrio_12B12_NC_021070: major head subunit; NCTC8895_01479; phage(gi481019165)1.90e-128Showinfo_outline
261463044..1463559Uncharacterised protein; NCTC8895_014800.0Showinfo_outline
271463560..1464000PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC8895_01481; phage(gi481019161)1.85e-45Showinfo_outline
281464000..1464542PHAGE_Vibrio_12B12_NC_021070: phage virion morphogenesis protein; NCTC8895_01482; phage(gi481019160)1.35e-80Showinfo_outline
291464539..1465147PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC8895_01483; phage(gi481019159)2.38e-45Showinfo_outline
301465144..1465332PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC8895_01484; phage(gi481019158)5.26e-05Showinfo_outline
311465334..1466812PHAGE_Vibrio_12B12_NC_021070: tail sheath protein; NCTC8895_01485; phage(gi481019157)0.0Showinfo_outline
321466822..1467175PHAGE_Vibrio_12B12_NC_021070: tail tube protein; NCTC8895_01486; phage(gi481019156)7.02e-23Showinfo_outline
331467179..1467562PHAGE_Vibrio_12B12_NC_021070: extracellular solute-binding protein family 7 protein; NCTC8895_01487; phage(gi481019155)2.92e-27Showinfo_outline
341467661..1469457PHAGE_Vibrio_12B12_NC_021070: phage tail tape measure protein; NCTC8895_01488; phage(gi481019154)8.68e-65Showinfo_outline
351469454..1470716PHAGE_Vibrio_12B12_NC_021070: DNA circulation protein; NCTC8895_01489; phage(gi481019153)3.59e-113Showinfo_outline
361470901..1471800PHAGE_Vibrio_12B12_NC_021070: P protein; NCTC8895_01490; phage(gi481019152)1.27e-95Showinfo_outline
371471791..1472330PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC8895_01491; phage(gi481019151)1.48e-44Showinfo_outline
381472327..1472776PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC8895_01492; phage(gi481019150)1.11e-33Showinfo_outline
391472766..1473839PHAGE_Vibrio_12B12_NC_021070: baseplate J-like protein; NCTC8895_01493; phage(gi481019149)2.90e-126Showinfo_outline
401473824..1474408PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC8895_01494; phage(gi481019148)5.03e-59Showinfo_outline
411474408..1474734PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; NCTC8895_01495; phage(gi481019147)1.28e-10Showinfo_outline
421474790..1475158PHAGE_Salmon_Fels_1_NC_010391: putative bacteriophage tail fiber protein; Lambda gpN homolog; NCTC8895_01496; phage(gi169257204)3.23e-24Showinfo_outline
431475158..1476045PHAGE_Entero_HK630_NC_019723: tail fiber assembly protein; NCTC8895_01497; phage(gi428782810)4.51e-33Showinfo_outline
441476058..1477908PHAGE_Escher_D108_NC_013594: tail fiber protein; NCTC8895_01498; phage(gi281199694)4.87e-17Showinfo_outline
451477908..1478768Uncharacterised protein; NCTC8895_014990.0Showinfo_outline
461479006..1480013PHAGE_Bacill_SPbeta_NC_001884: IMPB/MUCB/SAMB family protein; NCTC8895_01500; phage(gi9630142)1.12e-17Showinfo_outline
471480063..1480515acetyltransferase YafP; NCTC8895_015010.0Showinfo_outline
48complement(1480558..1482015)PHAGE_Brevib_Jenst_NC_028805: putative peptidase M20; NCTC8895_01502; phage(gi971745009)1.26e-05Showinfo_outline

Region 6, total 20 CDS

#CDS PositionBLAST HitE-ValueSequence
12105811..2105822attL0.0Showinfo_outline
2complement(2106020..2106652)PHAGE_Erwini_ENT90_NC_019932: phage integrase family protein; NCTC8895_02130; phage(gi431810942)8.85e-62Showinfo_outline
32106666..2107310PHAGE_Salmon_RE_2010_NC_019488: replication protein; NCTC8895_02131; phage(gi418489692)2.09e-125Showinfo_outline
42108047..2109534PHAGE_Pseudo_phi3_NC_030940: hypothetical protein; NCTC8895_02133; phage(gi100001)1.14e-33Showinfo_outline
52109623..2109811PHAGE_Salmon_RE_2010_NC_019488: hypothetical protein; NCTC8895_02134; phage(gi418489693)7.70e-30Showinfo_outline
62110134..2110598Uncharacterised protein; NCTC8895_021350.0Showinfo_outline
7complement(2110673..2111050)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; NCTC8895_02136; phage(gi557307573)1.94e-82Showinfo_outline
82112443..2113018Uncharacterised protein; NCTC8895_021370.0Showinfo_outline
92113023..2113982PHAGE_Thermu_OH2_NC_021784: SMF family protein; NCTC8895_02138; phage(gi526118339)2.99e-24Showinfo_outline
10complement(2114003..2114392)PHAGE_Salmon_RE_2010_NC_019488: capsid packaging protein; NCTC8895_02139; phage(gi418489696)1.74e-78Showinfo_outline
112114562..2115047PHAGE_Salmon_RE_2010_NC_019488: tail protein; NCTC8895_02140; phage(gi418489725)2.98e-106Showinfo_outline
122115044..2115496PHAGE_Salmon_RE_2010_NC_019488: gene D protein; NCTC8895_02141; phage(gi418489726)6.66e-90Showinfo_outline
132115857..2116126PHAGE_Salmon_RE_2010_NC_019488: gene D protein; NCTC8895_02142; phage(gi418489726)5.21e-44Showinfo_outline
142116194..2116409PHAGE_Salmon_RE_2010_NC_019488: OGR regulator of late gene transcription; NCTC8895_02143; phage(gi418489727)1.04e-28Showinfo_outline
152116567..2116788Uncharacterised protein; NCTC8895_021440.0Showinfo_outline
162117569..2118717PROPHAGE_Escher_Sakai: putative transposase; NCTC8895_02146; phage(gi38704244)0.0Showinfo_outline
17complement(2118757..2120442)TrkA, Potassium channel-family protein; NCTC8895_021470.0Showinfo_outline
182120584..2120595attR0.0Showinfo_outline
192120709..2121092inner membrane protein; NCTC8895_021480.0Showinfo_outline
20complement(2121099..2121362)PHAGE_Cronob_vB_CsaM_GAP32_NC_019401: glutaredoxin; NCTC8895_02149; phage(gi414087106)3.94e-19Showinfo_outline

Region 7, total 70 CDS

#CDS PositionBLAST HitE-ValueSequence
14140818..4140834attL0.0Showinfo_outline
2complement(4143793..4145721)PHAGE_Klebsi_PKP126_NC_031053: hypothetical protein; NCTC8895_04164; phage(gi100059)4.17e-05Showinfo_outline
3complement(4145800..4148868)PHAGE_Pseudo_PS_1_NC_029066: tail protein; NCTC8895_04165; phage(gi985757719)1.39e-76Showinfo_outline
4complement(4148865..4149245)PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_030909: hypothetical protein; NCTC8895_04166; phage(gi100020)1.37e-22Showinfo_outline
5complement(4149255..4149737)PHAGE_Pseudo_D3_NC_002484: hypothetical protein; NCTC8895_04167; phage(gi9635614)2.77e-34Showinfo_outline
6complement(4149724..4150197)PHAGE_Pseudo_PAJU2_NC_011373: hypothetical protein; NCTC8895_04168; phage(gi209552438)5.00e-46Showinfo_outline
74150255..4150485Uncharacterised protein; NCTC8895_041690.0Showinfo_outline
8complement(4150508..4154113)PHAGE_Entero_c_1_NC_019706: tail length tape measure protein; NCTC8895_04170; phage(gi428781748)4.09e-92Showinfo_outline
9complement(4154180..4155007)PHAGE_Escher_TL_2011b_NC_019445: hypothetical protein; NCTC8895_04171; phage(gi418487673)1.22e-74Showinfo_outline
104155158..4155457PHAGE_Salmon_118970_sal4_NC_030919: prohead core protein protease; NCTC8895_04172; phage(gi100061)6.35e-09Showinfo_outline
11complement(4155495..4155998)Uncharacterised protein; NCTC8895_041730.0Showinfo_outline
12complement(4156064..4156420)Uncharacterised protein; NCTC8895_041740.0Showinfo_outline
13complement(4156841..4157323)PHAGE_Pseudo_phiPSA1_NC_024365: hypothetical protein; NCTC8895_04175; phage(gi658307708)2.11e-11Showinfo_outline
14complement(4157377..4158549)PHAGE_Vibrio_VpKK5_NC_026610: tail subunit; NCTC8895_04176; phage(gi764162154)1.01e-13Showinfo_outline
15complement(4158573..4158965)PHAGE_Acinet_Bphi_B1251_NC_019541: hypothetical protein; NCTC8895_04177; phage(gi423262013)2.37e-19Showinfo_outline
16complement(4158962..4159513)PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC8895_04178; phage(gi356870610)3.69e-35Showinfo_outline
17complement(4159515..4159898)PHAGE_Pseudo_YMC11/02/R656_NC_028657: hypothetical protein; NCTC8895_04179; phage(gi966197873)3.58e-29Showinfo_outline
18complement(4159900..4160310)PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; NCTC8895_04180; phage(gi985757703)1.34e-19Showinfo_outline
19complement(4160314..4160562)PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC8895_04181; phage(gi356870607)8.62e-15Showinfo_outline
20complement(4160612..4161748)PHAGE_Rhizob_vB_RglS_P106B_NC_023566: putative coat protein; NCTC8895_04182; phage(gi589890404)4.50e-88Showinfo_outline
21complement(4161836..4162600)PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC8895_04183; phage(gi356870605)9.74e-126Showinfo_outline
22complement(4162707..4163819)PHAGE_Pseudo_PS_1_NC_029066: head morphogenesis protein; NCTC8895_04184; phage(gi985757697)1.82e-111Showinfo_outline
23complement(4163803..4165227)PHAGE_Mannhe_vB_MhS_1152AP2_NC_028956: portal protein; NCTC8895_04185; phage(gi971760486)2.45e-75Showinfo_outline
24complement(4165232..4166536)PHAGE_Acinet_vB_AbaS_TRS1_NC_031098: hypothetical protein; NCTC8895_04186; phage(gi100002)0.0Showinfo_outline
25complement(4166514..4167518)PHAGE_Burkho_BcepMigl_NC_019917: terminase small subunit; NCTC8895_04187; phage(gi431809885)1.35e-54Showinfo_outline
26complement(4167522..4167710)Uncharacterised protein; NCTC8895_041880.0Showinfo_outline
27complement(4167769..4168005)PHAGE_Entero_ST104_NC_005841: hypothetical protein; NCTC8895_04189; phage(gi46358693)1.85e-11Showinfo_outline
284168098..4168346Uncharacterised protein; NCTC8895_041900.0Showinfo_outline
294168782..4169078Uncharacterised protein; NCTC8895_041910.0Showinfo_outline
30complement(4169391..4170020)PHAGE_Cronob_ENT39118_NC_019934: endolysin; NCTC8895_04192; phage(gi431811063)5.71e-111Showinfo_outline
31complement(4170020..4170301)PHAGE_Entero_mEp390_NC_019721: putative holin; NCTC8895_04193; phage(gi428782713)1.42e-26Showinfo_outline
32complement(4170288..4170674)PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; NCTC8895_04194; phage(gi100130)6.20e-77Showinfo_outline
33complement(4170919..4171740)PHAGE_Entero_HK225_NC_019717: late gene regulator Q; NCTC8895_04195; phage(gi428782441)1.88e-146Showinfo_outline
34complement(4171737..4171859)Uncharacterised protein; NCTC8895_041960.0Showinfo_outline
35complement(4171856..4172212)PHAGE_Entero_HK225_NC_019717: endodeoxyribonuclease; NCTC8895_04197; phage(gi428782440)4.36e-53Showinfo_outline
36complement(4172209..4172589)PHAGE_Erwini_phiEt88_NC_015295: hypothetical protein; NCTC8895_04198; phage(gi327198620)1.61e-46Showinfo_outline
37complement(4172714..4173310)PHAGE_Phage_Gifsy_1_NC_010392: conserved hypothetical bacteriophage protein; NCTC8895_04199; phage(gi169257248)9.61e-113Showinfo_outline
38complement(4173723..4173956)PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage putative DNA damage-inducible protein; DinI homolog; NCTC8895_04200; phage(gi169257250)5.21e-35Showinfo_outline
394174057..4175277PROPHAGE_Escher_CFT073: transposase; NCTC8895_04201; phage(gi26249432)4.48e-61Showinfo_outline
40complement(4175614..4176204)Uncharacterised protein; NCTC8895_042020.0Showinfo_outline
41complement(4176314..4177303)PHAGE_Entero_Tyrion_NC_031077: hypothetical protein; NCTC8895_04203; phage(gi100049)3.32e-14Showinfo_outline
42complement(4177263..4177475)PHAGE_Escher_phiV10_NC_007804: hypothetical protein; NCTC8895_04204; phage(gi89152466)4.68e-15Showinfo_outline
43complement(4177476..4177646)PHAGE_Entero_phiEF24C_NC_009904: hypothetical protein; NCTC8895_04205; phage(gi158079459)4.44e-07Showinfo_outline
44complement(4177646..4178086)PHAGE_Entero_P22_NC_002371: EaD; NCTC8895_04206; phage(gi51236733)3.47e-07Showinfo_outline
45complement(4178083..4178367)PHAGE_Escher_ECML_117_NC_025441: hypothetical protein; NCTC8895_04207; phage(gi725950145)5.73e-15Showinfo_outline
46complement(4178342..4178776)PHAGE_Salmon_SPN1S_NC_016761: hypothetical protein; NCTC8895_04208; phage(gi374531239)4.50e-29Showinfo_outline
47complement(4178773..4178907)Uncharacterised protein; NCTC8895_042090.0Showinfo_outline
48complement(4178904..4179689)PHAGE_Burkho_KS9_NC_013055: chromosome partitioning protein gp35; NCTC8895_04210; phage(gi255033718)1.18e-86Showinfo_outline
49complement(4179682..4180017)PHAGE_Phage_Gifsy_1_NC_010392: hypothetical protein; NCTC8895_04211; phage(gi169257253)2.14e-17Showinfo_outline
50complement(4180025..4180495)PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage DNA replication protein; DnaC homolog; NCTC8895_04212; phage(gi169257254)7.86e-87Showinfo_outline
51complement(4180778..4181686)PHAGE_Shigel_POCJ13_NC_025434: primosomal protein I; NCTC8895_04213; phage(gi725949717)4.49e-100Showinfo_outline
52complement(4181701..4181889)PHAGE_Entero_P88_NC_026014: carboxylate-amine ligase; NCTC8895_04214; phage(gi744692719)1.90e-06Showinfo_outline
53complement(4182236..4182772)PHAGE_Entero_phi80_NC_021190: CII decision making protein; NCTC8895_04215; phage(gi824479625)9.88e-88Showinfo_outline
54complement(4182775..4183005)PHAGE_Phage_Gifsy_1_NC_010392: conserved hypothetical prophage protein; putative Cro analog; NCTC8895_04216; phage(gi169257257)2.26e-29Showinfo_outline
554183358..4183531PHAGE_Phage_Gifsy_1_NC_010392: probable regulatory protein; putative repressor protein; helix-turn-helix motif; NCTC8895_04217; phage(gi169257258)4.27e-19Showinfo_outline
564183922..4184113secreted protein; NCTC8895_042180.0Showinfo_outline
574184122..4184277PHAGE_Phage_Gifsy_1_NC_010392: hypothetical protein; NCTC8895_04219; phage(gi169257260)2.10e-19Showinfo_outline
584184415..4186805PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage exodeoxyribonuclease VIII-like protein; NCTC8895_04220; phage(gi169257262)0.0Showinfo_outline
594186774..4187517PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage exodeoxyribonuclease VIII-like protein; NCTC8895_04221; phage(gi169257262)4.80e-155Showinfo_outline
604187530..4188618PHAGE_Phage_Gifsy_1_NC_010392: RecT; NCTC8895_04222; phage(gi169257263)3.59e-138Showinfo_outline
614188653..4188991Uncharacterised protein; NCTC8895_042230.0Showinfo_outline
624188984..4189595PHAGE_Salmon_ST64T_NC_004348: hypothetical protein; NCTC8895_04224; phage(gi24371543)7.72e-53Showinfo_outline
634189592..4189900PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; NCTC8895_04225; phage(gi401817569)4.35e-35Showinfo_outline
644190185..4190460PHAGE_Phage_Gifsy_1_NC_010392: hypothetical protein; NCTC8895_04226; phage(gi169257265)7.38e-41Showinfo_outline
65complement(4190438..4191667)PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage integrase protein; NCTC8895_04227; phage(gi169257266)0.0Showinfo_outline
664191873..4191889attR0.0Showinfo_outline
67complement(4192099..4192578)Sigma factor RpoE regulatory protein RseC; NCTC8895_042280.0Showinfo_outline
68complement(4192575..4193531)anti-sigma E factor; NCTC8895_042290.0Showinfo_outline
69complement(4193531..4194181)anti-RNA polymerase sigma factor SigE; NCTC8895_042300.0Showinfo_outline
70complement(4194214..4194789)PHAGE_Rhizob_vB_RleM_P10VF_NC_025429: RNA polymerase sigma-70 factor; NCTC8895_04231; phage(gi712913000)3.09e-10Showinfo_outline

Region 8, total 50 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(4742233..4743243)PROPHAGE_Escher_MG1655: glycation-binding protein, predicted protease/chaperone; essential for genome maintenance; NCTC8895_04805; phage(gi16130960)0.0Showinfo_outline
24743481..4743696PHAGE_Pelagi_HTVC008M_NC_020484: 30S ribosomal protein S21; NCTC8895_04806; phage(gi460042545)5.26e-05Showinfo_outline
34743808..4745553PHAGE_Helico_phiHP33_NC_016568: DNA primase; NCTC8895_04807; phage(gi371671350)1.20e-51Showinfo_outline
44745772..4747592PHAGE_Synech_S_CBS3_NC_015465: group 2 RNA polymerase sigma factor; NCTC8895_04808; phage(gi331028036)3.51e-37Showinfo_outline
5complement(4747692..4748198)G:T/U mismatch-specific uracil/thymine DNA-glycosylase; NCTC8895_048090.0Showinfo_outline
64748323..4748398tRNA0.0Showinfo_outline
74748354..4748385attL0.0Showinfo_outline
84748878..4749285PHAGE_Salmon_SP_004_NC_021774: hypothetical protein; NCTC8895_04811; phage(gi526003640)3.18e-36Showinfo_outline
9complement(4749334..4750494)PHAGE_Yersin_L_413C_NC_004745: tail protein; NCTC8895_04812; phage(gi30065731)0.0Showinfo_outline
10complement(4750494..4750973)PHAGE_Yersin_L_413C_NC_004745: gpU; NCTC8895_04813; phage(gi30065730)5.36e-92Showinfo_outline
11complement(4750990..4753428)PHAGE_Yersin_L_413C_NC_004745: gpT; NCTC8895_04814; phage(gi30065729)0.0Showinfo_outline
12complement(4753573..4753848)PHAGE_Yersin_L_413C_NC_004745: gpE; NCTC8895_04815; phage(gi30065727)9.86e-45Showinfo_outline
13complement(4753909..4754424)PHAGE_Escher_pro483_NC_028943: major tail tube protein; NCTC8895_04816; phage(gi971758537)1.74e-91Showinfo_outline
14complement(4754438..4755619)PHAGE_Escher_pro483_NC_028943: major tail sheath protein; NCTC8895_04817; phage(gi971758536)0.0Showinfo_outline
15complement(4755729..4756799)PROPHAGE_Salmon_Ty2: variable tail fiber protein; NCTC8895_04818; phage(gi29143754)2.68e-38Showinfo_outline
16complement(4756821..4757660)Uncharacterised protein; NCTC8895_048190.0Showinfo_outline
17complement(4757662..4758993)PHAGE_Rhodoc_ReqiPoco6_NC_023694: tail fiber protein; NCTC8895_04820; phage(gi593774716)5.03e-08Showinfo_outline
18complement(4758936..4759424)putative prophage endo-N-neuraminidase; NCTC8895_048210.0Showinfo_outline
19complement(4759421..4760032)PHAGE_Yersin_L_413C_NC_004745: gpI; NCTC8895_04822; phage(gi30065721)1.12e-61Showinfo_outline
20complement(4760025..4760933)PHAGE_Yersin_L_413C_NC_004745: baseplate assembly protein; NCTC8895_04823; phage(gi30065720)4.71e-150Showinfo_outline
21complement(4760938..4761285)PHAGE_Yersin_L_413C_NC_004745: baseplate wedge subunit; NCTC8895_04824; phage(gi30065719)3.36e-62Showinfo_outline
22complement(4761282..4761959)PHAGE_Salmon_SEN1_NC_029003: baseplate assembly protein V; NCTC8895_04825; phage(gi971764924)3.03e-122Showinfo_outline
23complement(4761992..4762441)PHAGE_Salmon_SEN1_NC_029003: tail completion protein; NCTC8895_04826; phage(gi971764923)4.99e-58Showinfo_outline
24complement(4762434..4762901)PHAGE_Entero_fiAA91_ss_NC_022750: tail completion protein; NCTC8895_04827; phage(gi557307596)2.03e-81Showinfo_outline
25complement(4762997..4763428)PHAGE_Entero_PsP3_NC_005340: gp11; NCTC8895_04828; phage(gi41057363)2.75e-60Showinfo_outline
26complement(4763425..4763922)PHAGE_Yersin_L_413C_NC_004745: gpK; NCTC8895_04829; phage(gi30065713)5.23e-104Showinfo_outline
27complement(4763909..4764199)PHAGE_Salmon_SEN1_NC_029003: holin; NCTC8895_04830; phage(gi971764918)2.36e-47Showinfo_outline
28complement(4764204..4764407)PHAGE_Salmon_SP_004_NC_021774: phage tail protein; NCTC8895_04831; phage(gi526003620)2.92e-34Showinfo_outline
29complement(4764407..4764913)PHAGE_Yersin_L_413C_NC_004745: gpL; NCTC8895_04832; phage(gi30065710)1.91e-96Showinfo_outline
30complement(4765010..4765753)PHAGE_Yersin_L_413C_NC_004745: terminase endonuclease subunit; NCTC8895_04833; phage(gi30065709)5.87e-123Showinfo_outline
31complement(4765757..4766815)PHAGE_Yersin_L_413C_NC_004745: capsid protein; NCTC8895_04834; phage(gi30065708)0.0Showinfo_outline
32complement(4766889..4767743)PHAGE_Yersin_L_413C_NC_004745: capsid-scaffolding protein; NCTC8895_04835; phage(gi30065707)9.89e-172Showinfo_outline
334767909..4769678PHAGE_Yersin_L_413C_NC_004745: terminase ATPase subunit; NCTC8895_04836; phage(gi30065706)0.0Showinfo_outline
344769678..4770721PHAGE_Yersin_L_413C_NC_004745: portal vertex protein; NCTC8895_04837; phage(gi30065705)0.0Showinfo_outline
354771107..4772186PHAGE_Yersin_L_413C_NC_004745: hypothetical protein; NCTC8895_04838; phage(gi30065744)6.68e-47Showinfo_outline
364772186..4773115PHAGE_Entero_WPhi_NC_005056: gp96; NCTC8895_04839; phage(gi33438940)1.50e-119Showinfo_outline
37complement(4773117..4774055)PHAGE_Entero_WPhi_NC_005056: Mth; NCTC8895_04840; phage(gi33438939)0.0Showinfo_outline
38complement(4774192..4774386)PHAGE_Entero_186_NC_001317: Tum; NCTC8895_04841; phage(gi9634097)6.53e-27Showinfo_outline
39complement(4774446..4775666)PROPHAGE_Escher_CFT073: transposase; NCTC8895_04842; phage(gi26249432)4.48e-61Showinfo_outline
40complement(4775826..4778051)PHAGE_Salmon_SEN1_NC_029003: replication protein; NCTC8895_04843; phage(gi971764947)0.0Showinfo_outline
41complement(4778044..4778325)PHAGE_Yersin_L_413C_NC_004745: hypothetical protein; NCTC8895_04844; phage(gi30065741)1.67e-25Showinfo_outline
42complement(4778326..4778547)PHAGE_Salmon_SEN1_NC_029003: putative zinc-finger containing protein; NCTC8895_04845; phage(gi971764944)2.11e-40Showinfo_outline
43complement(4778547..4778774)PHAGE_Salmon_SEN1_NC_029003: hypothetical protein; NCTC8895_04846; phage(gi971764943)8.35e-31Showinfo_outline
44complement(4778843..4779181)PHAGE_Salmon_RE_2010_NC_019488: hypothetical protein; NCTC8895_04847; phage(gi418489688)4.05e-50Showinfo_outline
45complement(4779145..4779345)PHAGE_Entero_PsP3_NC_005340: gp32; NCTC8895_04848; phage(gi41057384)8.24e-39Showinfo_outline
46complement(4779353..4779862)PHAGE_Entero_PsP3_NC_005340: gp31; NCTC8895_04849; phage(gi41057383)4.98e-116Showinfo_outline
47complement(4779893..4780114)PHAGE_Pseudo_phi3_NC_030940: hypothetical protein; NCTC8895_04850; phage(gi100004)2.96e-05Showinfo_outline
484780244..4780828PHAGE_Erwini_ENT90_NC_019932: CI repressor protein; NCTC8895_04851; phage(gi431810951)8.87e-41Showinfo_outline
494780835..4781872PHAGE_Erwini_ENT90_NC_019932: phage integrase family protein; NCTC8895_04852; phage(gi431810942)5.08e-159Showinfo_outline
504781959..4781990attR0.0Showinfo_outline
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Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 5423896 bps
Phages: 8
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

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