Submission Results

Sequence Name: Not Available

GenBank Accession Number: UGLF00000000.1

GenInfo (GI) Number: 0000000000

Download Results: UGLF00000000.1.PHASTER.zip

gi|00000000|ref|UGLF00000000.1| Klebsiella pneumoniae strain NCTC9632, whole genome shotgun 5737393, gc%: 56.86%

Download summary as .txt file: summary.txt file_download

Total: 5 prophage regions have been identified, of which 2 regions are intact, 2 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
116.8Kbincomplete30882375-99259 info_outlinePHAGE_Aurant_AmM_1_NC_027334(2)52.24%Show info_outline
216.6Kbquestionable9018560209-576836 info_outlinePHAGE_Salmon_118970_sal3_NC_031940(3)49.95%Show info_outline
342.8Kbintact100521453237-1496084 info_outlinePHAGE_Escher_phiV10_NC_007804(32)53.05%Show info_outline
430Kbintact100223254280-3284291 info_outlinePHAGE_Klebsi_phiKO2_NC_005857(20)55.69%Show info_outline
58.7Kbincomplete30123286333-3295052 info_outlinePHAGE_Shigel_SfIV_NC_022749(2)49.11%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|UGLF00000000.1| Klebsiella pneumoniae strain NCTC9632, whole genome shotgun 5737393, gc%: 56.86%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 10 CDS

#CDS PositionBLAST HitE-ValueSequence
182375..82387attL0.0Showinfo_outline
2complement(87417..88361)PHAGE_Entero_phi80_NC_021190: integrase; NCTC9632_00120; phage(gi824479609)1.11e-39Showinfo_outline
3complement(88937..89146)Uncharacterised protein; NCTC9632_001210.0Showinfo_outline
4complement(89152..89766)PHAGE_Mannhe_vB_MhS_1152AP2_NC_028956: tail length tape measure protein; NCTC9632_00122; phage(gi971760502)2.37e-22Showinfo_outline
5complement(89768..90037)PHAGE_Pseudo_PAJU2_NC_011373: putative tape measure protein; NCTC9632_00123; phage(gi209552437)3.95e-20Showinfo_outline
690496..91830PHAGE_Aurant_AmM_1_NC_027334: DnaA C-terminal domain containing protein; NCTC9632_00124; phage(gi849119914)5.72e-06Showinfo_outline
791835..92935PHAGE_Aurant_AmM_1_NC_027334: DNA polymerase III beta subunit; NCTC9632_00125; phage(gi849119901)4.95e-60Showinfo_outline
893143..94216DNA recombination and repair protein RecF; NCTC9632_001260.0Showinfo_outline
994245..96659PHAGE_Bacill_G_NC_023719: gp252; NCTC9632_00127; phage(gi593777708)1.35e-132Showinfo_outline
1099259..99271attR0.0Showinfo_outline

Region 2, total 20 CDS

#CDS PositionBLAST HitE-ValueSequence
1560209..560243attL0.0Showinfo_outline
2560454..561674PHAGE_Entero_phi80_NC_021190: integrase; NCTC9632_00579; phage(gi824479609)1.35e-64Showinfo_outline
3561674..562324Uncharacterised protein; NCTC9632_005800.0Showinfo_outline
4562925..563209PHAGE_Entero_P4_NC_001609: transcriptional regulator; NCTC9632_00581; phage(gi9627517)3.52e-07Showinfo_outline
5563230..563922Uncharacterised protein; NCTC9632_005820.0Showinfo_outline
6563919..564893Uncharacterised protein; NCTC9632_005830.0Showinfo_outline
7564886..565080Uncharacterised protein; NCTC9632_005840.0Showinfo_outline
8565077..565295Uncharacterised protein; NCTC9632_005850.0Showinfo_outline
9565279..567030PHAGE_Entero_P4_NC_001609: DNA primase; NCTC9632_00586; phage(gi9627512)4.31e-158Showinfo_outline
10567631..568791PHAGE_Entero_SfI_NC_027339: phage major capsid protein; NCTC9632_00587; phage(gi849250290)2.86e-61Showinfo_outline
11568843..569403PHAGE_Clostr_phi3626_NC_003524: putative prohead protease; NCTC9632_00588; phage(gi20065968)1.35e-30Showinfo_outline
12569405..570640PHAGE_Shigel_SfIV_NC_022749: portal protein; NCTC9632_00589; phage(gi557307529)1.57e-56Showinfo_outline
13570637..570978PHAGE_Pseudo_PAJU2_NC_011373: putative head-tail adaptor; NCTC9632_00590; phage(gi209552428)4.84e-14Showinfo_outline
14570971..571264PHAGE_Shigel_SfII_NC_021857: head-tail connector protein; NCTC9632_00591; phage(gi526244642)2.20e-07Showinfo_outline
15571264..571707PHAGE_Burkho_phiE125_NC_003309: putative class I holin; NCTC9632_00592; phage(gi17975232)2.70e-14Showinfo_outline
16571700..571852Uncharacterised protein; NCTC9632_005930.0Showinfo_outline
17571981..572337PHAGE_Psychr_Psymv2_NC_023734: terminase small subunit; NCTC9632_00594; phage(gi593779760)2.11e-17Showinfo_outline
18572321..573982PHAGE_Brucel_BiPBO1_NC_031264: hypothetical protein; NCTC9632_00595; phage(gi100002)6.90e-106Showinfo_outline
19573994..576291PHAGE_Entero_HK140_NC_019710: tail length tape measure protein; NCTC9632_00596; phage(gi428781954)2.97e-129Showinfo_outline
20576836..576870attR0.0Showinfo_outline

Region 3, total 54 CDS

#CDS PositionBLAST HitE-ValueSequence
11453237..1454703PHAGE_Staphy_42E_NC_007052: ORF012; NCTC9632_01458; phage(gi66395520)3.49e-35Showinfo_outline
21454771..1456348PHAGE_Halovi_HGTV_1_NC_021328: carbamoyl phosphate synthase small subunit; NCTC9632_01459; phage(gi509140368)8.01e-05Showinfo_outline
31456406..1456421attL0.0Showinfo_outline
41456586..1457791PHAGE_Escher_phiV10_NC_007804: putative integrase; NCTC9632_01460; phage(gi89152450)0.0Showinfo_outline
5complement(1457808..1457999)Uncharacterised protein; NCTC9632_014610.0Showinfo_outline
6complement(1457996..1458592)PHAGE_Salmon_SPN1S_NC_016761: putative adenine methylase; NCTC9632_01462; phage(gi374531223)2.31e-135Showinfo_outline
7complement(1458589..1459095)Uncharacterised protein; NCTC9632_014630.0Showinfo_outline
8complement(1459469..1459717)PHAGE_Escher_phiV10_NC_007804: putative transcriptional regulator; NCTC9632_01464; phage(gi89152453)3.60e-42Showinfo_outline
9complement(1459768..1460790)PHAGE_Salmon_epsilon15_NC_004775: RecT; NCTC9632_01465; phage(gi30387413)0.0Showinfo_outline
10complement(1460800..1461699)PHAGE_Salmon_epsilon15_NC_004775: hypothetical protein; NCTC9632_01466; phage(gi30387414)0.0Showinfo_outline
11complement(1461696..1461995)PHAGE_Escher_phiV10_NC_007804: hypothetical protein; NCTC9632_01467; phage(gi89152455)8.22e-31Showinfo_outline
12complement(1461992..1462141)PHAGE_Escher_phiV10_NC_007804: hypothetical protein; NCTC9632_01468; phage(gi89152456)8.05e-18Showinfo_outline
13complement(1462360..1462941)PHAGE_Escher_phiV10_NC_007804: putative transcriptional repressor; NCTC9632_01469; phage(gi89152457)9.70e-51Showinfo_outline
141463096..1463329PHAGE_Escher_phiV10_NC_007804: hypothetical protein; NCTC9632_01470; phage(gi89152458)3.06e-27Showinfo_outline
151463476..1463685PHAGE_Escher_phiV10_NC_007804: hypothetical protein; NCTC9632_01471; phage(gi89152475)2.34e-31Showinfo_outline
161463685..1464452PHAGE_Escher_phiV10_NC_007804: putative primosomal protein; NCTC9632_01472; phage(gi89152459)3.37e-20Showinfo_outline
171464449..1465234PHAGE_Escher_phiV10_NC_007804: putative replication protein p; NCTC9632_01473; phage(gi155370096)8.08e-166Showinfo_outline
181465354..1465698PHAGE_Escher_phiV10_NC_007804: hypothetical protein; NCTC9632_01474; phage(gi89152461)4.31e-69Showinfo_outline
191465760..1465894Uncharacterised protein; NCTC9632_014750.0Showinfo_outline
201465891..1466358PHAGE_Vibrio_pYD38_A_NC_021534: hypothetical protein; NCTC9632_01476; phage(gi514051016)4.40e-17Showinfo_outline
211466355..1466639PHAGE_Escher_ECML_117_NC_025441: hypothetical protein; NCTC9632_01477; phage(gi725950145)5.73e-15Showinfo_outline
221466636..1467721PHAGE_Entero_HK022_NC_002166: hypothetical protein; NCTC9632_01478; phage(gi19343382)5.83e-08Showinfo_outline
231467725..1468312PHAGE_Deep_s_D6E_NC_019544: HNH endonuclease; NCTC9632_01479; phage(gi423262342)1.72e-36Showinfo_outline
241468305..1468643PHAGE_Escher_phiV10_NC_007804: hypothetical protein; NCTC9632_01480; phage(gi89152469)9.98e-53Showinfo_outline
251468825..1469394PHAGE_Escher_phiV10_NC_007804: putative terminase small subunit; NCTC9632_01481; phage(gi155370097)7.89e-105Showinfo_outline
261469391..1470866PHAGE_Escher_phiV10_NC_007804: putative terminase large subunit; NCTC9632_01482; phage(gi89152423)0.0Showinfo_outline
27complement(1470910..1471287)PHAGE_Escher_phiV10_NC_007804: hypothetical protein; NCTC9632_01483; phage(gi89152424)5.19e-58Showinfo_outline
281472043..1472246PHAGE_Escher_phiV10_NC_007804: hypothetical protein; NCTC9632_01484; phage(gi89152427)3.11e-08Showinfo_outline
291472250..1473929PHAGE_Escher_phiV10_NC_007804: hypothetical protein; NCTC9632_01485; phage(gi89152428)0.0Showinfo_outline
301473926..1474231PHAGE_Escher_phiV10_NC_007804: hypothetical protein; NCTC9632_01486; phage(gi89152429)4.19e-21Showinfo_outline
311474289..1474471Uncharacterised protein; NCTC9632_014870.0Showinfo_outline
321474525..1474911PHAGE_Escher_phiV10_NC_007804: putative protease; NCTC9632_01488; phage(gi89152430)2.74e-41Showinfo_outline
331474924..1475931PHAGE_Salmon_SPN1S_NC_016761: major capsid protein; NCTC9632_01489; phage(gi374531200)0.0Showinfo_outline
341475942..1476334PHAGE_Salmon_SPN1S_NC_016761: hypothetical protein; NCTC9632_01490; phage(gi374531201)3.61e-79Showinfo_outline
351476327..1476605PHAGE_Escher_phiV10_NC_007804: hypothetical protein; NCTC9632_01491; phage(gi89152433)4.27e-17Showinfo_outline
361476654..1477265PHAGE_Escher_phiV10_NC_007804: hypothetical protein; NCTC9632_01492; phage(gi89152435)2.04e-62Showinfo_outline
371477265..1479742PHAGE_Escher_phiV10_NC_007804: hypothetical protein; NCTC9632_01493; phage(gi89152436)0.0Showinfo_outline
381479744..1480214PHAGE_Escher_phiV10_NC_007804: hypothetical protein; NCTC9632_01494; phage(gi89152437)4.23e-53Showinfo_outline
391480207..1480704PHAGE_Escher_phiV10_NC_007804: hypothetical protein; NCTC9632_01495; phage(gi89152438)7.87e-33Showinfo_outline
401480717..1483233PHAGE_Escher_phiV10_NC_007804: hypothetical structural protein; NCTC9632_01496; phage(gi89152439)0.0Showinfo_outline
411483230..1485035PHAGE_Escher_phiV10_NC_007804: hypothetical protein; NCTC9632_01497; phage(gi89152440)0.0Showinfo_outline
421485039..1487513PHAGE_Escher_phiV10_NC_007804: structural protein; NCTC9632_01498; phage(gi89152441)0.0Showinfo_outline
431487709..1488005Uncharacterised protein; NCTC9632_014990.0Showinfo_outline
44complement(1488285..1488662)PHAGE_Sinorh_phiN3_NC_028945: hypothetical protein; NCTC9632_01500; phage(gi971759250)1.57e-06Showinfo_outline
45complement(1488659..1488871)Uncharacterised protein; NCTC9632_015010.0Showinfo_outline
46complement(1490178..1490678)PHAGE_Acinet_vB_AbaS_TRS1_NC_031098: hypothetical protein; NCTC9632_01504; phage(gi100021)2.48e-05Showinfo_outline
47complement(1490972..1491232)PHAGE_Escher_phiV10_NC_007804: hypothetical protein; NCTC9632_01505; phage(gi89152444)7.36e-35Showinfo_outline
481491420..1493837PHAGE_Escher_phiV10_NC_007804: putative tail fiber; NCTC9632_01506; phage(gi89152445)4.59e-85Showinfo_outline
491493837..1494043Uncharacterised protein; NCTC9632_015070.0Showinfo_outline
501494144..1494548PHAGE_Escher_phiV10_NC_007804: putative integral membrane protein; NCTC9632_01508; phage(gi89152446)5.42e-78Showinfo_outline
511494535..1494840PHAGE_Escher_phiV10_NC_007804: putative holin; NCTC9632_01509; phage(gi89152447)4.11e-52Showinfo_outline
521494830..1495459PHAGE_Escher_phiV10_NC_007804: putative endolysin; NCTC9632_01510; phage(gi89152448)1.19e-114Showinfo_outline
531495655..1495930PHAGE_Escher_phiV10_NC_007804: putative rz1-like protein; NCTC9632_01511; phage(gi89152478)5.12e-31Showinfo_outline
541496084..1496099attR0.0Showinfo_outline

Region 4, total 22 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(3254280..3255776)PHAGE_Klebsi_Sushi_NC_028774: tail fiber; NCTC9632_03176; phage(gi971742192)1.67e-20Showinfo_outline
2complement(3255845..3268549)PHAGE_Klebsi_phiKO2_NC_005857: Gp21; NCTC9632_03177; phage(gi46402107)0.0Showinfo_outline
3complement(3268612..3269205)PHAGE_Klebsi_phiKO2_NC_005857: Gp20; NCTC9632_03178; phage(gi46402106)1.30e-103Showinfo_outline
4complement(3269696..3270406)PHAGE_Klebsi_phiKO2_NC_005857: Gp18; NCTC9632_03179; phage(gi46402104)4.62e-166Showinfo_outline
5complement(3270408..3271163)PHAGE_Klebsi_phiKO2_NC_005857: Gp17; NCTC9632_03180; phage(gi46402103)2.27e-158Showinfo_outline
6complement(3271160..3271498)PHAGE_Klebsi_phiKO2_NC_005857: Gp16; NCTC9632_03181; phage(gi46402102)7.72e-72Showinfo_outline
7complement(3271498..3272598)PHAGE_Klebsi_phiKO2_NC_005857: putative tapemeasure protein; NCTC9632_03182; phage(gi46402101)0.0Showinfo_outline
8complement(3272598..3273491)PHAGE_Klebsi_phiKO2_NC_005857: putative tapemeasure protein; NCTC9632_03183; phage(gi46402101)5.19e-125Showinfo_outline
9complement(3273574..3274833)PHAGE_Klebsi_phiKO2_NC_005857: putative tapemeasure protein; NCTC9632_03184; phage(gi46402101)0.0Showinfo_outline
10complement(3275066..3275431)PHAGE_Klebsi_phiKO2_NC_005857: putative tail assembly chaperone; NCTC9632_03185; phage(gi46402099)3.47e-71Showinfo_outline
11complement(3275489..3275950)PHAGE_Klebsi_phiKO2_NC_005857: major tail shaft subunit; NCTC9632_03186; phage(gi46402098)2.19e-88Showinfo_outline
12complement(3275982..3276383)PHAGE_Klebsi_phiKO2_NC_005857: Gp11; NCTC9632_03187; phage(gi46402097)1.15e-87Showinfo_outline
13complement(3276380..3276769)PHAGE_Klebsi_phiKO2_NC_005857: Gp10; NCTC9632_03188; phage(gi46402096)5.13e-78Showinfo_outline
14complement(3276750..3277088)PHAGE_Klebsi_phiKO2_NC_005857: Gp9; NCTC9632_03189; phage(gi46402095)8.25e-72Showinfo_outline
15complement(3277085..3277333)PHAGE_Klebsi_phiKO2_NC_005857: Gp8; NCTC9632_03190; phage(gi46402094)1.53e-52Showinfo_outline
16complement(3277383..3277643)PHAGE_Klebsi_phiKO2_NC_005857: Gp7; NCTC9632_03191; phage(gi46402093)1.60e-31Showinfo_outline
17complement(3277702..3278988)PHAGE_Klebsi_phiKO2_NC_005857: major capsid head protein precursor; NCTC9632_03192; phage(gi46402092)0.0Showinfo_outline
18complement(3279066..3279986)PHAGE_Klebsi_phiKO2_NC_005857: putative head maturation protease; NCTC9632_03193; phage(gi46402091)0.0Showinfo_outline
19complement(3280023..3281282)PHAGE_Klebsi_phiKO2_NC_005857: putative portal protein; NCTC9632_03194; phage(gi46402090)0.0Showinfo_outline
20complement(3281455..3283176)PHAGE_Klebsi_phiKO2_NC_005857: putative large terminase subunit; NCTC9632_03195; phage(gi46402088)0.0Showinfo_outline
21complement(3283176..3283610)PHAGE_Klebsi_phiKO2_NC_005857: putative small terminase subunit; NCTC9632_03196; phage(gi46402087)1.63e-31Showinfo_outline
22complement(3283860..3284291)PHAGE_Klebsi_phiKO2_NC_005857: Gp62; NCTC9632_03197; phage(gi46402148)1.04e-57Showinfo_outline

Region 5, total 12 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(3286333..3286905)PHAGE_Entero_P4_NC_001609: hypothetical protein; NCTC9632_03200; phage(gi9627510)2.09e-16Showinfo_outline
2complement(3287310..3287585)PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC9632_03201; phage(gi428782715)1.52e-36Showinfo_outline
3complement(3287582..3287929)PHAGE_Pseudo_vB_Pae_Kakheti25_NC_017864: holin; NCTC9632_03202; phage(gi388542661)1.31e-09Showinfo_outline
4complement(3287926..3288465)PHAGE_Erwini_vB_EamP_S6_NC_019514: endolysin; NCTC9632_03203; phage(gi422935930)1.32e-81Showinfo_outline
5complement(3288462..3288773)PHAGE_Salmon_ST64T_NC_004348: holin protein; NCTC9632_03204; phage(gi24371577)1.23e-47Showinfo_outline
63288967..3289137Uncharacterised protein; NCTC9632_032050.0Showinfo_outline
7complement(3291026..3291628)PHAGE_Pectob_ZF40_NC_019522: hypothetical protein; NCTC9632_03208; phage(gi422936665)8.26e-100Showinfo_outline
8complement(3291645..3292676)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9632_03209; phage(gi428782365)3.20e-118Showinfo_outline
9complement(3292676..3292879)PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; NCTC9632_03210; phage(gi401817580)2.00e-13Showinfo_outline
10complement(3292876..3293268)PHAGE_Shigel_SfIV_NC_022749: regulation protein; NCTC9632_03211; phage(gi557307569)1.56e-19Showinfo_outline
11complement(3293574..3294614)PROPHAGE_Shewan_MR-1: ISSod13, transposase; NCTC9632_03212; phage(gi24375047)0.0Showinfo_outline
12complement(3294819..3295052)PHAGE_Entero_mEp237_NC_019704: hypothetical protein; NCTC9632_03213; phage(gi435439313)4.81e-34Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 5737393 bps
Phages: 5
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download