Submission Results

Sequence Name: Not Available

GenBank Accession Number: UGLG00000000.1

GenInfo (GI) Number: 0000000000

Download Results: UGLG00000000.1.PHASTER.zip

gi|00000000|ref|UGLG00000000.1| Klebsiella pneumoniae strain NCTC11228, whole genome shotgun 5439082, gc%: 57.29%

Download summary as .txt file: summary.txt file_download

Total: 5 prophage regions have been identified, of which 4 regions are intact, 1 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
151.3Kbintact10078335-51647 info_outlinePHAGE_Salmon_64795_sal3_NC_031918(10)50.86%Show info_outline
242Kbintact150562060899-2102901 info_outlinePHAGE_Salmon_118970_sal3_NC_031940(11)50.62%Show info_outline
332.5Kbintact150394049697-4082293 info_outlinePHAGE_Salmon_Fels_2_NC_010463(28)51.74%Show info_outline
449.1Kbintact120734528642-4577748 info_outlinePHAGE_Salmon_SPN3UB_NC_019545(13)51.66%Show info_outline
56.4Kbincomplete5085412230-5418673 info_outlinePHAGE_Salmon_SJ46_NC_031129(2)55.76%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|UGLG00000000.1| Klebsiella pneumoniae strain NCTC11228, whole genome shotgun 5439082, gc%: 57.29%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 80 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(335..511)PHAGE_Escher_HK639_NC_016158: NinE; NCTC11228_00001; phage(gi356870663)2.57e-21Showinfo_outline
2complement(511..771)PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; NCTC11228_00002; phage(gi423262437)2.61e-28Showinfo_outline
3complement(759..1106)PHAGE_Phage_Gifsy_1_NC_010392: conserved hypothetical bacteriophage protein; NCTC11228_00003; phage(gi169257248)6.50e-27Showinfo_outline
41448..1459attL0.0Showinfo_outline
5complement(1675..1887)Uncharacterised protein; NCTC11228_000040.0Showinfo_outline
6complement(2873..3001)PHAGE_Shewan_1/40_NC_025470: hypothetical protein; NCTC11228_00005; phage(gi722121001)3.11e-08Showinfo_outline
7complement(3001..3225)Uncharacterised protein; NCTC11228_000060.0Showinfo_outline
8complement(3225..3515)RelE family toxin-antitoxin system; NCTC11228_000070.0Showinfo_outline
9complement(3980..4147)Uncharacterised protein; NCTC11228_000080.0Showinfo_outline
10complement(4211..4357)PHAGE_Vibrio_pYD38_A_NC_021534: hypothetical protein; NCTC11228_00009; phage(gi514051016)6.86e-08Showinfo_outline
11complement(4989..5384)PHAGE_Escher_phiV10_NC_007804: putative replication protein p; NCTC11228_00010; phage(gi155370096)1.20e-35Showinfo_outline
125660..5809Uncharacterised protein; NCTC11228_000110.0Showinfo_outline
13complement(5823..6383)PHAGE_Pectob_ZF40_NC_019522: putative replication protein; NCTC11228_00012; phage(gi422936654)1.16e-48Showinfo_outline
14complement(6517..6738)PHAGE_Entero_mEp213_NC_019720: CII protein; NCTC11228_00013; phage(gi428782643)5.49e-10Showinfo_outline
15complement(6778..7011)PHAGE_Escher_HK639_NC_016158: cro; NCTC11228_00014; phage(gi356870651)1.74e-25Showinfo_outline
167320..7805PHAGE_Salmon_ST160_NC_014900: C2; NCTC11228_00015; phage(gi318065925)2.75e-92Showinfo_outline
177828..7947Uncharacterised protein; NCTC11228_000160.0Showinfo_outline
188350..9018PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; NCTC11228_00017; phage(gi157166006)1.44e-138Showinfo_outline
199015..9419PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; NCTC11228_00018; phage(gi157166005)3.54e-78Showinfo_outline
20complement(9455..9658)PHAGE_Salmon_118970_sal4_NC_030919: hypothetical protein; NCTC11228_00019; phage(gi100018)4.00e-26Showinfo_outline
21complement(9803..9892)Uncharacterised protein; NCTC11228_000200.0Showinfo_outline
229904..10092Uncharacterised protein; NCTC11228_000210.0Showinfo_outline
2310085..10291PHAGE_Escher_P13374_NC_018846: host killing protein; NCTC11228_00022; phage(gi410491620)3.48e-09Showinfo_outline
2410355..10885PHAGE_Salmon_64795_sal3_NC_031918: hypothetical protein; NCTC11228_00023; phage(gi100063)4.80e-43Showinfo_outline
2510873..10968TolA protein; NCTC11228_000240.0Showinfo_outline
2610976..11260PHAGE_Entero_phi80_NC_021190: host RecBCD/SbcCD enzymes inhibitor; NCTC11228_00025; phage(gi824479615)2.75e-19Showinfo_outline
2711276..12121PHAGE_Ralsto_RSK1_NC_022915: putative phage recombination protein; NCTC11228_00026; phage(gi560186064)6.04e-80Showinfo_outline
2812118..12798PHAGE_Cronob_ENT47670_NC_019927: exonuclease; NCTC11228_00027; phage(gi431810511)1.64e-149Showinfo_outline
2912795..13223PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC11228_00028; phage(gi356870637)1.08e-81Showinfo_outline
3013220..13876PHAGE_Escher_HK639_NC_016158: adenine specific methyltransferase; NCTC11228_00029; phage(gi356870635)2.07e-143Showinfo_outline
3113873..14094PHAGE_Entero_933W_NC_000924: hypothetical protein; NCTC11228_00030; phage(gi9632476)5.17e-09Showinfo_outline
3214091..14657PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; NCTC11228_00031; phage(gi100097)2.38e-48Showinfo_outline
3315028..15246PHAGE_Stx2_vB_EcoP_24B_NC_027984: putative C4 zinc finger protein; NCTC11228_00032; phage(gi937456240)6.73e-16Showinfo_outline
3415460..16623PHAGE_Escher_HK639_NC_016158: integrase; NCTC11228_00033; phage(gi356870629)0.0Showinfo_outline
35complement(16851..17057)PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC11228_00034; phage(gi428782690)9.13e-14Showinfo_outline
36complement(17076..17810)PHAGE_Burkho_KS10_NC_011216: hypothetical protein; NCTC11228_00035; phage(gi198449311)2.82e-12Showinfo_outline
37complement(17823..20006)PHAGE_Burkho_KS10_NC_011216: hypothetical protein; NCTC11228_00036; phage(gi198449310)1.93e-103Showinfo_outline
38complement(20093..22564)PHAGE_Cronob_ENT47670_NC_019927: putative tail protein; NCTC11228_00037; phage(gi431810495)0.0Showinfo_outline
39complement(22551..22946)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC11228_00038; phage(gi431810526)9.49e-45Showinfo_outline
40complement(22943..23413)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC11228_00039; phage(gi431810518)7.49e-34Showinfo_outline
41complement(23413..23889)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC11228_00040; phage(gi431810519)2.79e-50Showinfo_outline
42complement(23931..26102)PHAGE_Salmon_II_E1_NC_010495: putative tail protein (tape measure); NCTC11228_00041; phage(gi170676309)1.23e-101Showinfo_outline
43complement(26327..26503)Uncharacterised protein; NCTC11228_000420.0Showinfo_outline
4427214..27330Uncharacterised protein; NCTC11228_000430.0Showinfo_outline
45complement(27895..28452)PHAGE_Entero_P1_NC_005856: Ant2; NCTC11228_00044; phage(gi46401670)2.52e-39Showinfo_outline
46complement(28861..29304)PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; NCTC11228_00045; phage(gi423262398)9.00e-30Showinfo_outline
47complement(29294..29467)PHAGE_Salmon_vB_SosS_Oslo_NC_018279: Arc-like DNA binding domain protein; NCTC11228_00046; phage(gi399528776)1.87e-28Showinfo_outline
4829638..29943PHAGE_Salmon_SPN3UB_NC_019545: Arc-like DNA binding domain protein; NCTC11228_00047; phage(gi423262396)6.44e-10Showinfo_outline
4930124..30135attR0.0Showinfo_outline
50complement(30139..30834)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC11228_00048; phage(gi431810508)4.44e-81Showinfo_outline
51complement(31424..31654)PHAGE_Cronob_ENT47670_NC_019927: major tail subunit; NCTC11228_00049; phage(gi431810520)2.05e-20Showinfo_outline
52complement(31731..32114)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC11228_00050; phage(gi431810530)3.86e-39Showinfo_outline
53complement(32111..32479)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC11228_00051; phage(gi431810532)2.96e-67Showinfo_outline
54complement(32531..33163)PHAGE_Pectob_phiTE_NC_020201: EndZ; NCTC11228_00052; phage(gi448244907)1.14e-38Showinfo_outline
55complement(33173..33535)PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: hypothetical protein; NCTC11228_00053; phage(gi971749596)1.54e-25Showinfo_outline
56complement(33532..33915)Uncharacterised protein; NCTC11228_000540.0Showinfo_outline
5734280..36322PHAGE_Pseudo_PS_1_NC_029066: tail protein; NCTC11228_00055; phage(gi985757719)2.66e-77Showinfo_outline
5836400..38553PHAGE_Burkho_KS10_NC_011216: hypothetical protein; NCTC11228_00056; phage(gi198449310)2.93e-103Showinfo_outline
5938566..39300PHAGE_Burkho_KS10_NC_011216: hypothetical protein; NCTC11228_00057; phage(gi198449311)2.88e-12Showinfo_outline
6039441..39572Uncharacterised protein; NCTC11228_000580.0Showinfo_outline
61complement(39678..40007)Uncharacterised protein; NCTC11228_000590.0Showinfo_outline
6240091..40306Uncharacterised protein; NCTC11228_000600.0Showinfo_outline
6340361..40600PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; NCTC11228_00061; phage(gi401817614)3.25e-29Showinfo_outline
6440557..40928PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC11228_00062; phage(gi428782690)7.69e-35Showinfo_outline
6541241..42410PHAGE_Entero_VT2phi_272_NC_028656: putative integrase; NCTC11228_00063; phage(gi966197718)0.0Showinfo_outline
6642515..43345PHAGE_Strept_SM1_NC_004996: gp11; NCTC11228_00064; phage(gi32469442)1.43e-05Showinfo_outline
67complement(43652..44173)PHAGE_Salmon_SEN22_NC_028696: EaA protein; NCTC11228_00065; phage(gi966201339)1.26e-53Showinfo_outline
68complement(44166..44366)PHAGE_Salmon_epsilon34_NC_011976: hypothetical protein; NCTC11228_00066; phage(gi221328647)1.79e-10Showinfo_outline
69complement(44347..44601)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC11228_00067; phage(gi428782346)3.04e-38Showinfo_outline
70complement(44594..44797)PHAGE_Entero_VT2phi_272_NC_028656: hypothetical protein; NCTC11228_00068; phage(gi966197733)1.28e-40Showinfo_outline
71complement(44794..45579)PHAGE_Burkho_phi6442_NC_009235: gp57; NCTC11228_00069; phage(gi134288621)2.97e-83Showinfo_outline
72complement(45579..45878)PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC11228_00070; phage(gi428782699)3.80e-17Showinfo_outline
73complement(46126..46890)PHAGE_Entero_P1_NC_005856: HrdC; NCTC11228_00071; phage(gi46401690)1.49e-93Showinfo_outline
74complement(47173..47433)PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: CI repressor; NCTC11228_00072; phage(gi971749642)1.69e-22Showinfo_outline
7548146..48667PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC11228_00073; phage(gi428782704)7.66e-79Showinfo_outline
7649016..49690PHAGE_Erwini_PEp14_NC_016767: putative phage O family protein; NCTC11228_00074; phage(gi374531901)1.98e-40Showinfo_outline
7749690..49860PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC11228_00075; phage(gi428782706)3.57e-05Showinfo_outline
7849928..50605PHAGE_Salmon_118970_sal3_NC_031940: prohead core protein protease; NCTC11228_00076; phage(gi100061)4.68e-84Showinfo_outline
7950748..51125PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; NCTC11228_00077; phage(gi100062)1.27e-64Showinfo_outline
8051138..51647PHAGE_Shigel_SfII_NC_021857: hypothetical protein; NCTC11228_00078; phage(gi526244681)2.95e-69Showinfo_outline

Region 2, total 60 CDS

#CDS PositionBLAST HitE-ValueSequence
12060899..2061807PHAGE_Burkho_phi1026b_NC_005284: gp58; NCTC11228_02033; phage(gi38707948)6.60e-07Showinfo_outline
2complement(2061817..2062698)Uncharacterised protein; NCTC11228_020340.0Showinfo_outline
3complement(2063067..2063549)Tryptophan synthase subunit beta like protein; NCTC11228_020350.0Showinfo_outline
4complement(2063798..2063872)tRNA0.0Showinfo_outline
52063851..2063870attL0.0Showinfo_outline
62064068..2065237PHAGE_Entero_VT2phi_272_NC_028656: putative integrase; NCTC11228_02037; phage(gi966197718)0.0Showinfo_outline
72065342..2066172PHAGE_Strept_SM1_NC_004996: gp11; NCTC11228_02038; phage(gi32469442)1.43e-05Showinfo_outline
8complement(2066479..2067000)PHAGE_Salmon_SEN22_NC_028696: EaA protein; NCTC11228_02039; phage(gi966201339)1.26e-53Showinfo_outline
9complement(2066993..2067193)PHAGE_Salmon_epsilon34_NC_011976: hypothetical protein; NCTC11228_02040; phage(gi221328647)1.79e-10Showinfo_outline
10complement(2067190..2067429)PHAGE_Entero_VT2phi_272_NC_028656: hypothetical protein; NCTC11228_02041; phage(gi966197732)1.88e-43Showinfo_outline
11complement(2067422..2067625)PHAGE_Entero_VT2phi_272_NC_028656: hypothetical protein; NCTC11228_02042; phage(gi966197733)1.28e-40Showinfo_outline
12complement(2067622..2068407)PHAGE_Burkho_phi6442_NC_009235: gp57; NCTC11228_02043; phage(gi134288621)2.97e-83Showinfo_outline
13complement(2068407..2068706)PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC11228_02044; phage(gi428782699)3.80e-17Showinfo_outline
14complement(2068794..2069717)PHAGE_Entero_P1_NC_005856: HrdC; NCTC11228_02045; phage(gi46401690)1.72e-119Showinfo_outline
15complement(2069999..2070259)PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: CI repressor; NCTC11228_02046; phage(gi971749642)1.69e-22Showinfo_outline
162070973..2071434PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC11228_02047; phage(gi428782704)4.27e-96Showinfo_outline
172071841..2072755PHAGE_Erwini_PEp14_NC_016767: putative phage O family protein; NCTC11228_02048; phage(gi374531901)1.72e-39Showinfo_outline
182072752..2073561PHAGE_Salmon_118970_sal3_NC_031940: prohead core protein protease; NCTC11228_02049; phage(gi100061)3.05e-141Showinfo_outline
192073571..2073948PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; NCTC11228_02050; phage(gi100062)1.27e-64Showinfo_outline
202074033..2074941PHAGE_Entero_SfV_NC_003444: hypothetical protein; NCTC11228_02051; phage(gi19549032)1.12e-152Showinfo_outline
212074955..2075533PHAGE_Entero_HK629_NC_019711: late gene regulator Q; NCTC11228_02052; phage(gi428782072)1.22e-05Showinfo_outline
222075703..2075778tRNA0.0Showinfo_outline
232076189..2077034PHAGE_Erwini_vB_EamM_Asesino_NC_031107: hypothetical protein; NCTC11228_02054; phage(gi100006)7.28e-143Showinfo_outline
242077798..2078193PHAGE_Entero_mEp390_NC_019721: putative holin; NCTC11228_02055; phage(gi428782712)2.20e-53Showinfo_outline
252078180..2078461PHAGE_Entero_mEp390_NC_019721: putative holin; NCTC11228_02056; phage(gi428782713)7.23e-45Showinfo_outline
262078461..2079090PHAGE_Escher_TL_2011b_NC_019445: putative endolysin; NCTC11228_02057; phage(gi418487637)8.03e-119Showinfo_outline
272079093..2079368PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC11228_02058; phage(gi428782715)6.17e-42Showinfo_outline
282079313..2079510PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC11228_02059; phage(gi428782716)3.02e-17Showinfo_outline
292079599..2079844PHAGE_Salmon_SPN9CC_NC_017985: hypothetical protein; NCTC11228_02060; phage(gi389060534)3.22e-10Showinfo_outline
302079916..2080119Protein of uncharacterised function (DUF551); NCTC11228_020610.0Showinfo_outline
312080202..2080435Uncharacterised protein; NCTC11228_020620.0Showinfo_outline
322080423..2080773PHAGE_Entero_mEp235_NC_019708: putative HNH endonuclease; NCTC11228_02063; phage(gi428781871)2.45e-66Showinfo_outline
332080904..2081398PHAGE_Salmon_ST64B_NC_004313: terminase small subunit; NCTC11228_02064; phage(gi23505446)2.20e-107Showinfo_outline
342081395..2083125PHAGE_Salmon_ST64B_NC_004313: Terminase large subunit; NCTC11228_02065; phage(gi23505447)0.0Showinfo_outline
352083135..2083320PHAGE_Klebsi_phiKO2_NC_005857: Gp3; NCTC11228_02066; phage(gi46402089)1.72e-14Showinfo_outline
362083320..2084549PHAGE_Entero_phiP27_NC_003356: putative portal protein; NCTC11228_02067; phage(gi18249902)0.0Showinfo_outline
372084533..2085189PHAGE_Entero_phiP27_NC_003356: putative prohead protease; NCTC11228_02068; phage(gi18249903)9.29e-137Showinfo_outline
382085204..2086412PHAGE_Entero_phiP27_NC_003356: putative major capsid protein; NCTC11228_02069; phage(gi18249904)0.0Showinfo_outline
392086651..2086971PHAGE_Entero_mEp235_NC_019708: head-tail connector II; NCTC11228_02070; phage(gi428781817)3.36e-20Showinfo_outline
402087041..2087238PHAGE_Entero_mEp235_NC_019708: hypothetical protein; NCTC11228_02071; phage(gi428781818)1.01e-30Showinfo_outline
412087240..2087572PHAGE_Entero_mEp235_NC_019708: hypothetical protein; NCTC11228_02072; phage(gi428781819)2.36e-68Showinfo_outline
422087565..2088104PHAGE_Entero_mEp235_NC_019708: hypothetical protein; NCTC11228_02073; phage(gi428781820)1.48e-103Showinfo_outline
432088101..2088466PHAGE_Entero_mEp235_NC_019708: hypothetical protein; NCTC11228_02074; phage(gi428781821)3.39e-62Showinfo_outline
442088523..2089014PHAGE_Entero_mEp235_NC_019708: major tail subunit; NCTC11228_02075; phage(gi428781822)4.80e-80Showinfo_outline
452089058..2089441PHAGE_Entero_mEp235_NC_019708: tail assembly chaperone; NCTC11228_02076; phage(gi428781823)1.87e-51Showinfo_outline
462089444..2089707PHAGE_Entero_mEp235_NC_019708: hypothetical protein; NCTC11228_02077; phage(gi428781824)1.14e-10Showinfo_outline
472089771..2090148SmpA / OmlA family; NCTC11228_020780.0Showinfo_outline
482090210..2092756PHAGE_Entero_mEp235_NC_019708: tail length tape measure protein; NCTC11228_02079; phage(gi428781825)4.30e-168Showinfo_outline
492093222..2093704PHAGE_Pseudo_D3_NC_002484: hypothetical protein; NCTC11228_02080; phage(gi9635614)2.43e-36Showinfo_outline
502093714..2094094PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_030909: hypothetical protein; NCTC11228_02081; phage(gi100020)4.52e-22Showinfo_outline
512094091..2097159PHAGE_Pseudo_PS_1_NC_029066: tail protein; NCTC11228_02082; phage(gi985757719)2.66e-75Showinfo_outline
522097237..2099390PHAGE_Burkho_KS10_NC_011216: hypothetical protein; NCTC11228_02083; phage(gi198449310)2.93e-103Showinfo_outline
532099403..2100137PHAGE_Burkho_KS10_NC_011216: hypothetical protein; NCTC11228_02084; phage(gi198449311)2.88e-12Showinfo_outline
542100278..2100409Uncharacterised protein; NCTC11228_020850.0Showinfo_outline
55complement(2100515..2100844)Uncharacterised protein; NCTC11228_020860.0Showinfo_outline
562100928..2101143Uncharacterised protein; NCTC11228_020870.0Showinfo_outline
572101198..2101437PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; NCTC11228_02088; phage(gi401817614)3.25e-29Showinfo_outline
582101394..2101765PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC11228_02089; phage(gi428782690)7.69e-35Showinfo_outline
592101861..2101880attR0.0Showinfo_outline
60complement(2101972..2102901)PHAGE_Entero_VT2phi_272_NC_028656: hypothetical protein; NCTC11228_02090; phage(gi966197797)0.0Showinfo_outline

Region 3, total 41 CDS

#CDS PositionBLAST HitE-ValueSequence
14049697..4049710attL0.0Showinfo_outline
2complement(4050122..4051219)PHAGE_Salmon_Fels_2_NC_010463: tail protein; NCTC11228_03957; phage(gi169936019)0.0Showinfo_outline
3complement(4051216..4051701)PHAGE_Salmon_Fels_2_NC_010463: P2 gpU-like tail protein; NCTC11228_03958; phage(gi169936020)1.97e-96Showinfo_outline
4complement(4051698..4054328)PHAGE_Shigel_SfII_NC_021857: tail protein; NCTC11228_03959; phage(gi526244650)1.22e-108Showinfo_outline
5complement(4054455..4054754)PHAGE_Salmon_Fels_2_NC_010463: P2 gpE-like tail protein; NCTC11228_03960; phage(gi169936023)4.84e-47Showinfo_outline
6complement(4054807..4055322)PHAGE_Salmon_Fels_2_NC_010463: major tail tube protein; NCTC11228_03961; phage(gi169936024)5.53e-106Showinfo_outline
7complement(4055332..4056504)PHAGE_Salmon_Fels_2_NC_010463: major tail sheath protein; NCTC11228_03962; phage(gi169936025)0.0Showinfo_outline
8complement(4056643..4057503)PHAGE_Salmon_SEN1_NC_029003: putative tail fibers protein; NCTC11228_03963; phage(gi971764927)1.85e-25Showinfo_outline
9complement(4057614..4057802)Uncharacterised protein; NCTC11228_039640.0Showinfo_outline
10complement(4057880..4058155)PHAGE_Erwini_PEp14_NC_016767: hypothetical protein; NCTC11228_03965; phage(gi374531865)6.34e-11Showinfo_outline
11complement(4058169..4060394)PHAGE_Salmon_PVP_SE1_NC_016071: putative fusion protein; NCTC11228_03966; phage(gi363539570)7.48e-11Showinfo_outline
12complement(4060400..4060996)PHAGE_Salmon_Fels_2_NC_010463: P2 gpI-like baseplate assembly protein; NCTC11228_03967; phage(gi169936031)2.57e-70Showinfo_outline
13complement(4060989..4061897)PHAGE_Salmon_Fels_2_NC_010463: baseplate assembly protein; NCTC11228_03968; phage(gi169936032)9.36e-150Showinfo_outline
14complement(4061884..4062246)PHAGE_Salmon_Fels_2_NC_010463: baseplate wedge subunit; NCTC11228_03969; phage(gi169936033)1.57e-63Showinfo_outline
15complement(4062243..4062815)PHAGE_Salmon_Fels_2_NC_010463: P2 gpV-like protein; NCTC11228_03970; phage(gi169936034)3.08e-98Showinfo_outline
164062919..4063581Uncharacterised protein; NCTC11228_039710.0Showinfo_outline
17complement(4063594..4064046)PHAGE_Salmon_Fels_2_NC_010463: P2 gpS-like tail completion protein; NCTC11228_03972; phage(gi169936035)9.15e-73Showinfo_outline
18complement(4064039..4064470)PHAGE_Salmon_Fels_2_NC_010463: P2 gpR-like tail completion protein; NCTC11228_03973; phage(gi169936036)1.75e-84Showinfo_outline
19complement(4064566..4064994)PHAGE_Salmon_Fels_2_NC_010463: P2 LysB-like protein; NCTC11228_03974; phage(gi169936038)1.97e-64Showinfo_outline
20complement(4064999..4065508)PHAGE_Salmon_Fels_2_NC_010463: endolysin; NCTC11228_03975; phage(gi169936041)4.05e-96Showinfo_outline
21complement(4065489..4065704)PHAGE_Salmon_Fels_2_NC_010463: lysis protein; NCTC11228_03976; phage(gi169936042)1.08e-40Showinfo_outline
22complement(4065708..4065911)PHAGE_Salmon_Fels_2_NC_010463: P2 gpX-like tail protein; NCTC11228_03977; phage(gi169936043)3.00e-37Showinfo_outline
23complement(4065911..4066375)PHAGE_Salmon_Fels_2_NC_010463: P2 gpL-like protein; NCTC11228_03978; phage(gi169936044)1.18e-96Showinfo_outline
24complement(4066472..4067122)PHAGE_Salmon_Fels_2_NC_010463: terminase endonuclease subunit; NCTC11228_03979; phage(gi169936045)2.77e-117Showinfo_outline
25complement(4067126..4068178)PHAGE_Salmon_Fels_2_NC_010463: capsid protein; NCTC11228_03980; phage(gi169936046)0.0Showinfo_outline
26complement(4068195..4069028)PHAGE_Salmon_Fels_2_NC_010463: capsid-scaffolding protein; NCTC11228_03981; phage(gi169936047)5.06e-154Showinfo_outline
274069177..4070931PHAGE_Salmon_Fels_2_NC_010463: terminase ATPase subunit; NCTC11228_03982; phage(gi169936048)0.0Showinfo_outline
284070931..4071959PHAGE_Salmon_Fels_2_NC_010463: portal vertex protein; NCTC11228_03983; phage(gi169936049)0.0Showinfo_outline
29complement(4072006..4073670)Uncharacterised protein; NCTC11228_039840.0Showinfo_outline
30complement(4073966..4074151)PHAGE_Salmon_Fels_2_NC_010463: hypothetical protein; NCTC11228_03985; phage(gi169936053)1.40e-12Showinfo_outline
31complement(4074266..4074526)PHAGE_Salmon_Fels_2_NC_010463: P2 gpA-like protein; NCTC11228_03986; phage(gi169936054)6.18e-38Showinfo_outline
32complement(4074519..4076648)PHAGE_Salmon_Fels_2_NC_010463: P2 gpA-like protein; NCTC11228_03987; phage(gi169936054)0.0Showinfo_outline
33complement(4076668..4076895)PHAGE_Salmon_Fels_2_NC_010463: DksA-like zinc finger domain containing protein; NCTC11228_03988; phage(gi169936056)3.13e-39Showinfo_outline
34complement(4076895..4077131)PHAGE_Salmon_Fels_2_NC_010463: hypothetical protein; NCTC11228_03989; phage(gi169936057)8.34e-16Showinfo_outline
35complement(4077199..4077540)PHAGE_Salmon_Fels_2_NC_010463: hypothetical protein; NCTC11228_03990; phage(gi169936058)1.76e-61Showinfo_outline
36complement(4077712..4078221)PHAGE_Salmon_Fels_2_NC_010463: bacteriophage regulatory protein CII; NCTC11228_03991; phage(gi169936061)2.61e-100Showinfo_outline
37complement(4078254..4078475)PHAGE_Haemop_HP2_NC_003315: orf2(S)cox; NCTC11228_03992; phage(gi17981819)2.69e-06Showinfo_outline
384079172..4079633Uncharacterised protein; NCTC11228_039930.0Showinfo_outline
394079766..4080839PHAGE_Lactob_Lj965_NC_005355: hypothetical protein; NCTC11228_03994; phage(gi41179236)4.30e-81Showinfo_outline
404081121..4081134attR0.0Showinfo_outline
414081268..4082293PHAGE_Salmon_Fels_2_NC_010463: integrase; NCTC11228_03995; phage(gi169936064)5.02e-129Showinfo_outline

Region 4, total 77 CDS

#CDS PositionBLAST HitE-ValueSequence
14528642..4528653attL0.0Showinfo_outline
2complement(4530665..4530871)PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC11228_04414; phage(gi428782690)9.13e-14Showinfo_outline
3complement(4530890..4531624)PHAGE_Burkho_KS10_NC_011216: hypothetical protein; NCTC11228_04415; phage(gi198449311)2.82e-12Showinfo_outline
4complement(4531637..4533820)PHAGE_Burkho_KS10_NC_011216: hypothetical protein; NCTC11228_04416; phage(gi198449310)1.93e-103Showinfo_outline
5complement(4533907..4536378)PHAGE_Cronob_ENT47670_NC_019927: putative tail protein; NCTC11228_04417; phage(gi431810495)0.0Showinfo_outline
6complement(4536365..4536760)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC11228_04418; phage(gi431810526)9.49e-45Showinfo_outline
7complement(4536757..4537227)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC11228_04419; phage(gi431810518)7.49e-34Showinfo_outline
8complement(4537227..4537703)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC11228_04420; phage(gi431810519)2.79e-50Showinfo_outline
9complement(4537745..4540318)PHAGE_Cronob_ENT47670_NC_019927: putative tail protein; NCTC11228_04421; phage(gi431810494)5.55e-102Showinfo_outline
10complement(4540877..4541209)Uncharacterised protein; NCTC11228_044220.0Showinfo_outline
11complement(4541590..4542342)PHAGE_Escher_PA2_NC_028449: antirepressor protein; NCTC11228_04423; phage(gi953358051)7.48e-58Showinfo_outline
12complement(4542412..4543116)PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; NCTC11228_04424; phage(gi423262398)2.79e-50Showinfo_outline
13complement(4543106..4543279)PHAGE_Salmon_vB_SosS_Oslo_NC_018279: Arc-like DNA binding domain protein; NCTC11228_04425; phage(gi399528776)1.87e-28Showinfo_outline
144543392..4543754PHAGE_Salmon_SPN3UB_NC_019545: Arc-like DNA binding domain protein; NCTC11228_04426; phage(gi423262396)7.22e-20Showinfo_outline
15complement(4543949..4544644)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC11228_04427; phage(gi431810508)4.44e-81Showinfo_outline
16complement(4544713..4545477)PHAGE_Salmon_II_E1_NC_010495: major tail subunit; NCTC11228_04428; phage(gi170676305)3.47e-61Showinfo_outline
17complement(4545536..4545919)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC11228_04429; phage(gi431810530)3.86e-39Showinfo_outline
18complement(4545916..4546284)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC11228_04430; phage(gi431810532)2.96e-67Showinfo_outline
19complement(4546336..4546968)PHAGE_Pectob_phiTE_NC_020201: EndZ; NCTC11228_04431; phage(gi448244907)1.14e-38Showinfo_outline
20complement(4546978..4547340)PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: hypothetical protein; NCTC11228_04432; phage(gi971749596)1.54e-25Showinfo_outline
21complement(4547337..4547720)Uncharacterised protein; NCTC11228_044330.0Showinfo_outline
22complement(4547724..4547894)PHAGE_Entero_ES18_NC_006949: gp12; NCTC11228_04434; phage(gi62362225)7.14e-17Showinfo_outline
23complement(4547894..4548295)PHAGE_Entero_ES18_NC_006949: gp11; NCTC11228_04435; phage(gi62362224)1.71e-68Showinfo_outline
24complement(4548362..4548655)PHAGE_Entero_ES18_NC_006949: gp10; NCTC11228_04436; phage(gi62362223)1.40e-23Showinfo_outline
25complement(4548665..4549741)PHAGE_Pseudo_phi297_NC_016762: putative coat protein; NCTC11228_04437; phage(gi374531291)0.0Showinfo_outline
26complement(4549759..4550208)PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; NCTC11228_04438; phage(gi423262383)3.33e-88Showinfo_outline
27complement(4550221..4551486)PHAGE_Entero_ES18_NC_006949: gp7; NCTC11228_04439; phage(gi62362220)0.0Showinfo_outline
28complement(4551489..4552415)PHAGE_Salmon_vB_SosS_Oslo_NC_018279: putative head morphogenesis protein; NCTC11228_04440; phage(gi399528762)0.0Showinfo_outline
29complement(4552375..4553724)PHAGE_Salmon_vB_SosS_Oslo_NC_018279: portal protein; NCTC11228_04441; phage(gi399528761)0.0Showinfo_outline
30complement(4554278..4555756)PHAGE_Vibrio_pYD38_B_NC_021561: hypothetical protein; NCTC11228_04442; phage(gi514231577)0.0Showinfo_outline
31complement(4555743..4556222)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC11228_04443; phage(gi431810521)3.04e-90Showinfo_outline
32complement(4556253..4556765)PHAGE_Cronob_ENT47670_NC_019927: putative transposase; NCTC11228_04444; phage(gi431810514)3.95e-95Showinfo_outline
334557032..4557268Uncharacterised protein; NCTC11228_044450.0Showinfo_outline
34complement(4557621..4557971)PHAGE_Escher_K1_dep(4)_NC_027993: putative spanin; NCTC11228_04446; phage(gi937456914)3.14e-21Showinfo_outline
35complement(4557968..4558471)PHAGE_Salmon_vB_SemP_Emek_NC_018275: lysin; NCTC11228_04447; phage(gi399498856)1.18e-97Showinfo_outline
36complement(4558468..4558788)PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; NCTC11228_04448; phage(gi423262443)5.63e-62Showinfo_outline
37complement(4559058..4559134)tRNA0.0Showinfo_outline
38complement(4559140..4559214)tRNA0.0Showinfo_outline
39complement(4559868..4560557)PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage antiterminator protein Q; NCTC11228_04452; phage(gi169257244)1.79e-85Showinfo_outline
40complement(4560554..4560694)PHAGE_Phage_Gifsy_1_NC_010392: conserved hypothetical bacteriophage protein; NCTC11228_04453; phage(gi169257245)9.51e-11Showinfo_outline
41complement(4560691..4560921)PHAGE_Salmon_Fels_1_NC_010391: hypothetical protein; NCTC11228_04454; phage(gi169257161)3.31e-06Showinfo_outline
42complement(4560918..4561499)PHAGE_Entero_YYZ_2008_NC_011356: putative recombination endonuclease; NCTC11228_04455; phage(gi209427761)7.58e-56Showinfo_outline
43complement(4561492..4561668)PHAGE_Escher_HK639_NC_016158: NinE; NCTC11228_04456; phage(gi356870663)2.57e-21Showinfo_outline
44complement(4561668..4562264)PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; NCTC11228_04457; phage(gi423262437)1.42e-62Showinfo_outline
45complement(4562422..4562625)Uncharacterised protein; NCTC11228_044580.0Showinfo_outline
46complement(4562625..4563623)PHAGE_Vibrio_pYD38_A_NC_021534: hypothetical protein; NCTC11228_04459; phage(gi514051012)5.91e-40Showinfo_outline
47complement(4563620..4564000)PHAGE_Entero_HK225_NC_019717: HNH endonuclease; NCTC11228_04460; phage(gi428782431)2.37e-85Showinfo_outline
48complement(4564004..4564132)PHAGE_Shewan_1/40_NC_025470: hypothetical protein; NCTC11228_04461; phage(gi722121001)3.11e-08Showinfo_outline
49complement(4564132..4564356)Uncharacterised protein; NCTC11228_044620.0Showinfo_outline
50complement(4564356..4564844)RelE family toxin-antitoxin system; NCTC11228_044630.0Showinfo_outline
51complement(4565073..4565486)PHAGE_Vibrio_pYD38_A_NC_021534: hypothetical protein; NCTC11228_04464; phage(gi514051016)2.60e-17Showinfo_outline
52complement(4565483..4565707)PHAGE_Pectob_ZF40_NC_019522: hypothetical protein; NCTC11228_04465; phage(gi422936659)1.92e-22Showinfo_outline
53complement(4565704..4566006)PHAGE_Serrat_phiMAM1_NC_020083: putative transcriptional regulator-HTH domain; NCTC11228_04466; phage(gi440789434)3.29e-06Showinfo_outline
54complement(4566006..4566782)PHAGE_Entero_Tyrion_NC_031077: hypothetical protein; NCTC11228_04467; phage(gi100044)2.21e-122Showinfo_outline
55complement(4566779..4567507)PHAGE_Pectob_ZF40_NC_019522: putative replication protein; NCTC11228_04468; phage(gi422936654)2.23e-56Showinfo_outline
56complement(4567641..4567862)PHAGE_Entero_mEp213_NC_019720: CII protein; NCTC11228_04469; phage(gi428782643)5.49e-10Showinfo_outline
57complement(4567902..4568135)PHAGE_Escher_HK639_NC_016158: cro; NCTC11228_04470; phage(gi356870651)1.74e-25Showinfo_outline
584568444..4568929PHAGE_Salmon_ST160_NC_014900: C2; NCTC11228_04471; phage(gi318065925)2.75e-92Showinfo_outline
594568952..4569071Uncharacterised protein; NCTC11228_044720.0Showinfo_outline
604569475..4570143PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; NCTC11228_04473; phage(gi157166006)1.44e-138Showinfo_outline
614570140..4570544PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; NCTC11228_04474; phage(gi157166005)3.54e-78Showinfo_outline
62complement(4570580..4570783)PHAGE_Salmon_118970_sal4_NC_030919: hypothetical protein; NCTC11228_04475; phage(gi100018)4.00e-26Showinfo_outline
63complement(4570928..4571017)Uncharacterised protein; NCTC11228_044760.0Showinfo_outline
644571029..4571217Uncharacterised protein; NCTC11228_044770.0Showinfo_outline
654571210..4571416PHAGE_Escher_P13374_NC_018846: host killing protein; NCTC11228_04478; phage(gi410491620)3.48e-09Showinfo_outline
664571480..4572010PHAGE_Salmon_64795_sal3_NC_031918: hypothetical protein; NCTC11228_04479; phage(gi100063)4.80e-43Showinfo_outline
674571998..4572093TolA protein; NCTC11228_044800.0Showinfo_outline
684572101..4572385PHAGE_Entero_phi80_NC_021190: host RecBCD/SbcCD enzymes inhibitor; NCTC11228_04481; phage(gi824479615)2.75e-19Showinfo_outline
694572401..4573246PHAGE_Ralsto_RSK1_NC_022915: putative phage recombination protein; NCTC11228_04482; phage(gi560186064)6.04e-80Showinfo_outline
704573243..4573923PHAGE_Cronob_ENT47670_NC_019927: exonuclease; NCTC11228_04483; phage(gi431810511)1.64e-149Showinfo_outline
714573920..4574348PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC11228_04484; phage(gi356870637)1.08e-81Showinfo_outline
724574345..4575001PHAGE_Escher_HK639_NC_016158: adenine specific methyltransferase; NCTC11228_04485; phage(gi356870635)2.07e-143Showinfo_outline
734574998..4575219PHAGE_Entero_933W_NC_000924: hypothetical protein; NCTC11228_04486; phage(gi9632476)5.17e-09Showinfo_outline
744575216..4575782PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; NCTC11228_04487; phage(gi100097)2.38e-48Showinfo_outline
754576153..4576371PHAGE_Stx2_vB_EcoP_24B_NC_027984: putative C4 zinc finger protein; NCTC11228_04488; phage(gi937456240)6.73e-16Showinfo_outline
764576364..4576375attR0.0Showinfo_outline
774576585..4577748PHAGE_Escher_HK639_NC_016158: integrase; NCTC11228_04489; phage(gi356870629)0.0Showinfo_outline

Region 5, total 8 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(5412230..5412496)PROPHAGE_Escher_MG1655: IS2 transposase TnpB; NCTC11228_05286; phage(gi16132094)2.12e-51Showinfo_outline
2complement(5412490..5413044)PROPHAGE_Escher_CFT073: insertion element IS2 transposase InsD; NCTC11228_05287; phage(gi26249446)4.52e-100Showinfo_outline
3complement(5413092..5413457)PROPHAGE_Escher_CFT073: transposase insC; NCTC11228_05288; phage(gi26249447)3.99e-57Showinfo_outline
4complement(5413878..5414360)PHAGE_Lister_vB_LmoS_293_NC_028929: hypothetical protein; NCTC11228_05289; phage(gi971756903)1.58e-05Showinfo_outline
5complement(5414348..5414614)putative CopG family helix-turn-helix protein; NCTC11228_052900.0Showinfo_outline
6complement(5414785..5415102)Uncharacterised protein; NCTC11228_052910.0Showinfo_outline
7complement(5415144..5418113)PROPHAGE_Xantho_33913: Tn5041 transposase; NCTC11228_05292; phage(gi21231545)3.94e-44Showinfo_outline
8complement(5418116..5418673)PHAGE_Sodali_phiSG1_NC_007902: resolvase; NCTC11228_05293; phage(gi89886020)5.29e-33Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 5439082 bps
Phages: 5
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download