Submission Results

Sequence Name: Not Available

GenBank Accession Number: UGLK00000000.1

GenInfo (GI) Number: 0000000000

Download Results: UGLK00000000.1.PHASTER.zip

gi|00000000|ref|UGLK00000000.1| Klebsiella pneumoniae strain NCTC5056, whole genome shotgun 5599284, gc%: 56.95%

Download summary as .txt file: summary.txt file_download

Total: 3 prophage regions have been identified, of which 3 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
116.6Kbintact10019764956-781572 info_outlinePHAGE_Salmon_118970_sal3_NC_031940(3)49.97%Show info_outline
245.9Kbintact100541658367-1704300 info_outlinePHAGE_Escher_phiV10_NC_007804(32)52.95%Show info_outline
330Kbintact100223464783-3494794 info_outlinePHAGE_Klebsi_phiKO2_NC_005857(20)55.69%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|UGLK00000000.1| Klebsiella pneumoniae strain NCTC5056, whole genome shotgun 5599284, gc%: 56.95%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 21 CDS

#CDS PositionBLAST HitE-ValueSequence
1764956..764990attL0.0Showinfo_outline
2765201..766421PHAGE_Entero_phi80_NC_021190: integrase; NCTC5056_00806; phage(gi824479609)1.35e-64Showinfo_outline
3766421..767071Uncharacterised protein; NCTC5056_008070.0Showinfo_outline
4767662..767946PHAGE_Entero_P4_NC_001609: transcriptional regulator; NCTC5056_00808; phage(gi9627517)3.52e-07Showinfo_outline
5767967..768659Uncharacterised protein; NCTC5056_008090.0Showinfo_outline
6768656..769630Uncharacterised protein; NCTC5056_008100.0Showinfo_outline
7769623..769817Uncharacterised protein; NCTC5056_008110.0Showinfo_outline
8769814..770032Uncharacterised protein; NCTC5056_008120.0Showinfo_outline
9770016..771767PHAGE_Entero_P4_NC_001609: DNA primase; NCTC5056_00813; phage(gi9627512)4.31e-158Showinfo_outline
10772368..773528PHAGE_Entero_SfI_NC_027339: phage major capsid protein; NCTC5056_00814; phage(gi849250290)2.86e-61Showinfo_outline
11773580..774140PHAGE_Clostr_phi3626_NC_003524: putative prohead protease; NCTC5056_00815; phage(gi20065968)1.35e-30Showinfo_outline
12774142..775377PHAGE_Shigel_SfIV_NC_022749: portal protein; NCTC5056_00816; phage(gi557307529)1.57e-56Showinfo_outline
13775374..775715PHAGE_Pseudo_PAJU2_NC_011373: putative head-tail adaptor; NCTC5056_00817; phage(gi209552428)4.84e-14Showinfo_outline
14775708..776001PHAGE_Shigel_SfII_NC_021857: head-tail connector protein; NCTC5056_00818; phage(gi526244642)2.20e-07Showinfo_outline
15776001..776444PHAGE_Burkho_phiE125_NC_003309: putative class I holin; NCTC5056_00819; phage(gi17975232)2.70e-14Showinfo_outline
16776437..776589Uncharacterised protein; NCTC5056_008200.0Showinfo_outline
17776718..777074PHAGE_Psychr_Psymv2_NC_023734: terminase small subunit; NCTC5056_00821; phage(gi593779760)2.11e-17Showinfo_outline
18777058..778719PHAGE_Brucel_BiPBO1_NC_031264: hypothetical protein; NCTC5056_00822; phage(gi100002)6.90e-106Showinfo_outline
19778731..779696PHAGE_Entero_HK022_NC_002166: tail length tape measure protein; NCTC5056_00823; phage(gi9634134)9.75e-113Showinfo_outline
20779762..781027PHAGE_Pseudo_PMG1_NC_016765: tail tape measure protein; NCTC5056_00824; phage(gi374531664)4.72e-35Showinfo_outline
21781572..781606attR0.0Showinfo_outline

Region 2, total 56 CDS

#CDS PositionBLAST HitE-ValueSequence
11658367..1659833PHAGE_Staphy_42E_NC_007052: ORF012; NCTC5056_01692; phage(gi66395520)3.49e-35Showinfo_outline
21659901..1661478PHAGE_Halovi_HGTV_1_NC_021328: carbamoyl phosphate synthase small subunit; NCTC5056_01693; phage(gi509140368)8.01e-05Showinfo_outline
31661536..1661551attL0.0Showinfo_outline
41661716..1662921PHAGE_Escher_phiV10_NC_007804: putative integrase; NCTC5056_01694; phage(gi89152450)0.0Showinfo_outline
5complement(1662938..1663129)Uncharacterised protein; NCTC5056_016950.0Showinfo_outline
6complement(1663126..1663722)PHAGE_Salmon_SPN1S_NC_016761: putative adenine methylase; NCTC5056_01696; phage(gi374531223)2.31e-135Showinfo_outline
7complement(1663719..1664225)Uncharacterised protein; NCTC5056_016970.0Showinfo_outline
8complement(1664599..1664847)PHAGE_Escher_phiV10_NC_007804: putative transcriptional regulator; NCTC5056_01698; phage(gi89152453)3.60e-42Showinfo_outline
9complement(1664898..1665920)PHAGE_Salmon_epsilon15_NC_004775: RecT; NCTC5056_01699; phage(gi30387413)0.0Showinfo_outline
10complement(1665930..1666829)PHAGE_Salmon_epsilon15_NC_004775: hypothetical protein; NCTC5056_01700; phage(gi30387414)0.0Showinfo_outline
11complement(1666826..1667125)PHAGE_Escher_phiV10_NC_007804: hypothetical protein; NCTC5056_01701; phage(gi89152455)8.22e-31Showinfo_outline
12complement(1667122..1667271)PHAGE_Escher_phiV10_NC_007804: hypothetical protein; NCTC5056_01702; phage(gi89152456)8.05e-18Showinfo_outline
13complement(1667490..1668071)PHAGE_Escher_phiV10_NC_007804: putative transcriptional repressor; NCTC5056_01703; phage(gi89152457)9.70e-51Showinfo_outline
141668226..1668459PHAGE_Escher_phiV10_NC_007804: hypothetical protein; NCTC5056_01704; phage(gi89152458)3.06e-27Showinfo_outline
151668606..1668815PHAGE_Escher_phiV10_NC_007804: hypothetical protein; NCTC5056_01705; phage(gi89152475)2.34e-31Showinfo_outline
161668815..1669582PHAGE_Escher_phiV10_NC_007804: putative primosomal protein; NCTC5056_01706; phage(gi89152459)3.37e-20Showinfo_outline
171669579..1670364PHAGE_Escher_phiV10_NC_007804: putative replication protein p; NCTC5056_01707; phage(gi155370096)8.08e-166Showinfo_outline
181670484..1670828PHAGE_Escher_phiV10_NC_007804: hypothetical protein; NCTC5056_01708; phage(gi89152461)4.31e-69Showinfo_outline
191670890..1671024Uncharacterised protein; NCTC5056_017090.0Showinfo_outline
201671021..1671488PHAGE_Vibrio_pYD38_A_NC_021534: hypothetical protein; NCTC5056_01710; phage(gi514051016)4.40e-17Showinfo_outline
211671485..1671769PHAGE_Escher_ECML_117_NC_025441: hypothetical protein; NCTC5056_01711; phage(gi725950145)5.73e-15Showinfo_outline
221671766..1672851PHAGE_Entero_HK022_NC_002166: hypothetical protein; NCTC5056_01712; phage(gi19343382)5.83e-08Showinfo_outline
231672855..1673442PHAGE_Deep_s_D6E_NC_019544: HNH endonuclease; NCTC5056_01713; phage(gi423262342)1.72e-36Showinfo_outline
241673435..1673773PHAGE_Escher_phiV10_NC_007804: hypothetical protein; NCTC5056_01714; phage(gi89152469)9.98e-53Showinfo_outline
251673955..1674524PHAGE_Escher_phiV10_NC_007804: putative terminase small subunit; NCTC5056_01715; phage(gi155370097)7.89e-105Showinfo_outline
261674521..1675996PHAGE_Escher_phiV10_NC_007804: putative terminase large subunit; NCTC5056_01716; phage(gi89152423)0.0Showinfo_outline
27complement(1676040..1676417)PHAGE_Escher_phiV10_NC_007804: hypothetical protein; NCTC5056_01717; phage(gi89152424)5.19e-58Showinfo_outline
281677173..1677376PHAGE_Escher_phiV10_NC_007804: hypothetical protein; NCTC5056_01718; phage(gi89152427)3.11e-08Showinfo_outline
291677380..1679059PHAGE_Escher_phiV10_NC_007804: hypothetical protein; NCTC5056_01719; phage(gi89152428)0.0Showinfo_outline
301679056..1679361PHAGE_Escher_phiV10_NC_007804: hypothetical protein; NCTC5056_01720; phage(gi89152429)4.19e-21Showinfo_outline
311679419..1679601Uncharacterised protein; NCTC5056_017210.0Showinfo_outline
321679655..1680041PHAGE_Escher_phiV10_NC_007804: putative protease; NCTC5056_01722; phage(gi89152430)2.74e-41Showinfo_outline
331680054..1681061PHAGE_Salmon_SPN1S_NC_016761: major capsid protein; NCTC5056_01723; phage(gi374531200)0.0Showinfo_outline
341681072..1681464PHAGE_Salmon_SPN1S_NC_016761: hypothetical protein; NCTC5056_01724; phage(gi374531201)3.61e-79Showinfo_outline
351681457..1681735PHAGE_Escher_phiV10_NC_007804: hypothetical protein; NCTC5056_01725; phage(gi89152433)4.27e-17Showinfo_outline
361681784..1682395PHAGE_Escher_phiV10_NC_007804: hypothetical protein; NCTC5056_01726; phage(gi89152435)2.04e-62Showinfo_outline
371682395..1684872PHAGE_Escher_phiV10_NC_007804: hypothetical protein; NCTC5056_01727; phage(gi89152436)0.0Showinfo_outline
381684874..1685344PHAGE_Escher_phiV10_NC_007804: hypothetical protein; NCTC5056_01728; phage(gi89152437)4.23e-53Showinfo_outline
391685337..1685834PHAGE_Escher_phiV10_NC_007804: hypothetical protein; NCTC5056_01729; phage(gi89152438)7.87e-33Showinfo_outline
401685847..1688363PHAGE_Escher_phiV10_NC_007804: hypothetical structural protein; NCTC5056_01730; phage(gi89152439)0.0Showinfo_outline
411688360..1690165PHAGE_Escher_phiV10_NC_007804: hypothetical protein; NCTC5056_01731; phage(gi89152440)0.0Showinfo_outline
421690169..1692643PHAGE_Escher_phiV10_NC_007804: structural protein; NCTC5056_01732; phage(gi89152441)0.0Showinfo_outline
431692839..1693135Uncharacterised protein; NCTC5056_017330.0Showinfo_outline
44complement(1693415..1693792)PHAGE_Sinorh_phiN3_NC_028945: hypothetical protein; NCTC5056_01734; phage(gi971759250)1.57e-06Showinfo_outline
45complement(1693789..1694001)Uncharacterised protein; NCTC5056_017350.0Showinfo_outline
46complement(1695308..1695808)PHAGE_Acinet_vB_AbaS_TRS1_NC_031098: hypothetical protein; NCTC5056_01738; phage(gi100021)2.48e-05Showinfo_outline
47complement(1696101..1696361)PHAGE_Escher_phiV10_NC_007804: hypothetical protein; NCTC5056_01739; phage(gi89152444)7.36e-35Showinfo_outline
481696549..1698966PHAGE_Escher_phiV10_NC_007804: putative tail fiber; NCTC5056_01740; phage(gi89152445)4.59e-85Showinfo_outline
491698966..1699172Uncharacterised protein; NCTC5056_017410.0Showinfo_outline
501699273..1699677PHAGE_Escher_phiV10_NC_007804: putative integral membrane protein; NCTC5056_01742; phage(gi89152446)5.42e-78Showinfo_outline
511699664..1699969PHAGE_Escher_phiV10_NC_007804: putative holin; NCTC5056_01743; phage(gi89152447)4.11e-52Showinfo_outline
521699959..1700588PHAGE_Escher_phiV10_NC_007804: putative endolysin; NCTC5056_01744; phage(gi89152448)1.19e-114Showinfo_outline
531700784..1701059PHAGE_Escher_phiV10_NC_007804: putative rz1-like protein; NCTC5056_01745; phage(gi89152478)5.12e-31Showinfo_outline
541701213..1701228attR0.0Showinfo_outline
55complement(1701270..1703138)choline-sulfatase; NCTC5056_017460.0Showinfo_outline
56complement(1703122..1704300)PHAGE_Achrom_JWF_NC_029075: anaerobic sulfatase-maturating enzyme; NCTC5056_01747; phage(gi985758667)2.84e-06Showinfo_outline

Region 3, total 22 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(3464783..3466279)PHAGE_Klebsi_Sushi_NC_028774: tail fiber; NCTC5056_03424; phage(gi971742192)1.67e-20Showinfo_outline
2complement(3466348..3479052)PHAGE_Klebsi_phiKO2_NC_005857: Gp21; NCTC5056_03425; phage(gi46402107)0.0Showinfo_outline
3complement(3479115..3479708)PHAGE_Klebsi_phiKO2_NC_005857: Gp20; NCTC5056_03426; phage(gi46402106)1.30e-103Showinfo_outline
4complement(3480199..3480909)PHAGE_Klebsi_phiKO2_NC_005857: Gp18; NCTC5056_03427; phage(gi46402104)4.62e-166Showinfo_outline
5complement(3480911..3481666)PHAGE_Klebsi_phiKO2_NC_005857: Gp17; NCTC5056_03428; phage(gi46402103)2.27e-158Showinfo_outline
6complement(3481663..3482001)PHAGE_Klebsi_phiKO2_NC_005857: Gp16; NCTC5056_03429; phage(gi46402102)7.72e-72Showinfo_outline
7complement(3482001..3483101)PHAGE_Klebsi_phiKO2_NC_005857: putative tapemeasure protein; NCTC5056_03430; phage(gi46402101)0.0Showinfo_outline
8complement(3483101..3483994)PHAGE_Klebsi_phiKO2_NC_005857: putative tapemeasure protein; NCTC5056_03431; phage(gi46402101)5.19e-125Showinfo_outline
9complement(3484077..3485336)PHAGE_Klebsi_phiKO2_NC_005857: putative tapemeasure protein; NCTC5056_03432; phage(gi46402101)0.0Showinfo_outline
10complement(3485569..3485934)PHAGE_Klebsi_phiKO2_NC_005857: putative tail assembly chaperone; NCTC5056_03433; phage(gi46402099)3.47e-71Showinfo_outline
11complement(3485992..3486453)PHAGE_Klebsi_phiKO2_NC_005857: major tail shaft subunit; NCTC5056_03434; phage(gi46402098)2.19e-88Showinfo_outline
12complement(3486485..3486886)PHAGE_Klebsi_phiKO2_NC_005857: Gp11; NCTC5056_03435; phage(gi46402097)1.15e-87Showinfo_outline
13complement(3486883..3487272)PHAGE_Klebsi_phiKO2_NC_005857: Gp10; NCTC5056_03436; phage(gi46402096)5.13e-78Showinfo_outline
14complement(3487253..3487591)PHAGE_Klebsi_phiKO2_NC_005857: Gp9; NCTC5056_03437; phage(gi46402095)8.25e-72Showinfo_outline
15complement(3487588..3487836)PHAGE_Klebsi_phiKO2_NC_005857: Gp8; NCTC5056_03438; phage(gi46402094)1.53e-52Showinfo_outline
16complement(3487886..3488146)PHAGE_Klebsi_phiKO2_NC_005857: Gp7; NCTC5056_03439; phage(gi46402093)1.60e-31Showinfo_outline
17complement(3488205..3489491)PHAGE_Klebsi_phiKO2_NC_005857: major capsid head protein precursor; NCTC5056_03440; phage(gi46402092)0.0Showinfo_outline
18complement(3489569..3490489)PHAGE_Klebsi_phiKO2_NC_005857: putative head maturation protease; NCTC5056_03441; phage(gi46402091)0.0Showinfo_outline
19complement(3490526..3491785)PHAGE_Klebsi_phiKO2_NC_005857: putative portal protein; NCTC5056_03442; phage(gi46402090)0.0Showinfo_outline
20complement(3491958..3493679)PHAGE_Klebsi_phiKO2_NC_005857: putative large terminase subunit; NCTC5056_03443; phage(gi46402088)0.0Showinfo_outline
21complement(3493679..3494113)PHAGE_Klebsi_phiKO2_NC_005857: putative small terminase subunit; NCTC5056_03444; phage(gi46402087)1.63e-31Showinfo_outline
22complement(3494363..3494794)PHAGE_Klebsi_phiKO2_NC_005857: Gp62; NCTC5056_03445; phage(gi46402148)1.04e-57Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 5599284 bps
Phages: 3
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download