Submission Results

Sequence Name: Not Available

GenBank Accession Number: UGLL00000000.1

GenInfo (GI) Number: 0000000000

Download Results: UGLL00000000.1.PHASTER.zip

gi|00000000|ref|UGLL00000000.1| Klebsiella pneumoniae strain NCTC13368, whole genome shotgun 5528186, gc%: 57.71%

Download summary as .txt file: summary.txt file_download

Total: 6 prophage regions have been identified, of which 4 regions are intact, 1 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
136.6Kbintact150461167649-1204305 info_outlinePHAGE_Salmon_RE_2010_NC_019488(32)52.11%Show info_outline
213.5Kbincomplete30171428458-1442033 info_outlinePHAGE_Salmon_118970_sal3_NC_031940(4)47.49%Show info_outline
320.3Kbintact120261444918-1465287 info_outlinePHAGE_Entero_mEp235_NC_019708(14)51.29%Show info_outline
433.7Kbintact150433118416-3152168 info_outlinePHAGE_Entero_mEp235_NC_019708(11)51.35%Show info_outline
551.2Kbintact150463267775-3319020 info_outlinePHAGE_Entero_P88_NC_026014(21)55.88%Show info_outline
620.4Kbquestionable80213475908-3496337 info_outlinePHAGE_Salmon_Fels_2_NC_010463(14)49.84%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|UGLL00000000.1| Klebsiella pneumoniae strain NCTC13368, whole genome shotgun 5528186, gc%: 57.71%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 49 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(1167649..1167864)PROPHAGE_Escher_MG1655: CP4-57 prophage; integrase; NCTC13368_01162; phage(gi16130540)1.47e-32Showinfo_outline
21168066..1168112attL0.0Showinfo_outline
3complement(1168238..1168861)Uncharacterised protein; NCTC13368_011630.0Showinfo_outline
4complement(1168863..1169894)PHAGE_Salmon_RE_2010_NC_019488: integrase; NCTC13368_01164; phage(gi418489683)0.0Showinfo_outline
5complement(1169897..1170301)PHAGE_Salmon_RE_2010_NC_019488: repressor; NCTC13368_01165; phage(gi418489684)9.11e-29Showinfo_outline
6complement(1170664..1170861)Uncharacterised protein; NCTC13368_011660.0Showinfo_outline
71170924..1171433PHAGE_Salmon_RE_2010_NC_019488: regulatory protein; NCTC13368_01167; phage(gi418489686)1.24e-103Showinfo_outline
81171605..1171943PHAGE_Salmon_RE_2010_NC_019488: hypothetical protein; NCTC13368_01168; phage(gi418489688)1.12e-34Showinfo_outline
91172011..1172244PHAGE_Salmon_RE_2010_NC_019488: hypothetical protein; NCTC13368_01169; phage(gi418489689)2.66e-25Showinfo_outline
101172244..1172471PHAGE_Salmon_RE_2010_NC_019488: zinc-finger containing protein; NCTC13368_01170; phage(gi418489690)8.66e-43Showinfo_outline
111172468..1173355PHAGE_Salmon_RE_2010_NC_019488: DNA adenine methyltransferase; NCTC13368_01171; phage(gi418489691)2.13e-154Showinfo_outline
121173336..1175744PHAGE_Salmon_RE_2010_NC_019488: replication protein; NCTC13368_01172; phage(gi418489692)0.0Showinfo_outline
131175928..1176116PHAGE_Salmon_RE_2010_NC_019488: hypothetical protein; NCTC13368_01173; phage(gi418489693)3.16e-35Showinfo_outline
14complement(1176688..1177359)Uncharacterised protein; NCTC13368_011740.0Showinfo_outline
15complement(1177356..1178396)PHAGE_Klebsi_Matisse_NC_028750: baseplate wedge subunit; NCTC13368_01175; phage(gi100179)9.35e-08Showinfo_outline
161178850..1179824PHAGE_Ralsto_RSA1_NC_009382: hypothetical protein; NCTC13368_01176; phage(gi145708125)4.11e-64Showinfo_outline
171179824..1180162Uncharacterised protein; NCTC13368_011770.0Showinfo_outline
18complement(1180207..1181259)PHAGE_Salmon_RE_2010_NC_019488: capsid packaging protein; NCTC13368_01178; phage(gi418489696)0.0Showinfo_outline
19complement(1181259..1183067)PHAGE_Salmon_RE_2010_NC_019488: terminase ATPase subunit; NCTC13368_01179; phage(gi418489697)0.0Showinfo_outline
201183268..1184095PHAGE_Salmon_RE_2010_NC_019488: capsid scaffolding protein; NCTC13368_01180; phage(gi418489698)6.47e-107Showinfo_outline
211184111..1185259PHAGE_Salmon_RE_2010_NC_019488: major capsid protein; NCTC13368_01181; phage(gi418489699)5.26e-169Showinfo_outline
221185263..1185916PHAGE_Salmon_RE_2010_NC_019488: terminase endonuclease subunit; NCTC13368_01182; phage(gi418489700)3.69e-65Showinfo_outline
231186015..1186482PHAGE_Salmon_RE_2010_NC_019488: head completion-stabilization protein; NCTC13368_01183; phage(gi418489701)2.97e-61Showinfo_outline
241186482..1186685PHAGE_Salmon_RE_2010_NC_019488: tail component protein; NCTC13368_01184; phage(gi418489702)2.14e-44Showinfo_outline
251186689..1186904PHAGE_Salmon_RE_2010_NC_019488: lysis protein S; NCTC13368_01185; phage(gi418489703)1.59e-29Showinfo_outline
261186885..1187400PHAGE_Salmon_RE_2010_NC_019488: lysozyme; NCTC13368_01186; phage(gi418489704)9.75e-92Showinfo_outline
271187397..1187825PHAGE_Salmon_RE_2010_NC_019488: lysozyme subunit B; NCTC13368_01187; phage(gi418489705)1.45e-65Showinfo_outline
281187921..1188352PHAGE_Salmon_RE_2010_NC_019488: tail protein; NCTC13368_01188; phage(gi418489706)6.77e-89Showinfo_outline
291188345..1188791PHAGE_Salmon_RE_2010_NC_019488: tail completion protein; NCTC13368_01189; phage(gi418489707)2.59e-83Showinfo_outline
30complement(1188942..1189643)PHAGE_Salmon_RE_2010_NC_019488: hypothetical protein; NCTC13368_01190; phage(gi418489708)3.40e-122Showinfo_outline
311189721..1190293PHAGE_Salmon_RE_2010_NC_019488: baseplate assembly protein V; NCTC13368_01191; phage(gi418489709)2.12e-97Showinfo_outline
321190290..1190652PHAGE_Salmon_RE_2010_NC_019488: baseplate wedge subunit; NCTC13368_01192; phage(gi418489710)1.17e-63Showinfo_outline
331190639..1191547PHAGE_Salmon_RE_2010_NC_019488: baseplate assembly protein J; NCTC13368_01193; phage(gi418489711)1.20e-143Showinfo_outline
341191540..1192136PHAGE_Salmon_RE_2010_NC_019488: tail protein I; NCTC13368_01194; phage(gi418489712)4.36e-69Showinfo_outline
351192142..1194466PHAGE_Salmon_PhiSH19_NC_019530: tail spike protein 1; NCTC13368_01195; phage(gi422937914)3.70e-14Showinfo_outline
361194478..1194774Uncharacterised protein; NCTC13368_011960.0Showinfo_outline
371194786..1195976PHAGE_Entero_186_NC_001317: tail fiber protein H; NCTC13368_01197; phage(gi9634074)4.28e-61Showinfo_outline
381196126..1197298PHAGE_Salmon_RE_2010_NC_019488: major tail sheath protein; NCTC13368_01198; phage(gi418489720)0.0Showinfo_outline
391197308..1197823PHAGE_Salmon_RE_2010_NC_019488: major tail tube protein; NCTC13368_01199; phage(gi418489721)3.13e-107Showinfo_outline
401197876..1198175PHAGE_Salmon_RE_2010_NC_019488: tail protein E; NCTC13368_01200; phage(gi418489722)7.47e-48Showinfo_outline
411198302..1200593PHAGE_Entero_SfV_NC_003444: tail protein; NCTC13368_01201; phage(gi19549004)9.34e-111Showinfo_outline
421200924..1201409PHAGE_Salmon_RE_2010_NC_019488: tail protein; NCTC13368_01202; phage(gi418489725)1.73e-94Showinfo_outline
431201406..1201957PHAGE_Salmon_RE_2010_NC_019488: gene D protein; NCTC13368_01203; phage(gi418489726)1.24e-92Showinfo_outline
441201908..1202504PHAGE_Salmon_RE_2010_NC_019488: gene D protein; NCTC13368_01204; phage(gi418489726)2.25e-129Showinfo_outline
451202571..1202789PHAGE_Salmon_RE_2010_NC_019488: OGR regulator of late gene transcription; NCTC13368_01205; phage(gi418489727)2.93e-34Showinfo_outline
46complement(1202847..1203218)PHAGE_Burkho_KS14_NC_015273: gp9; NCTC13368_01206; phage(gi327198278)1.09e-06Showinfo_outline
471203313..1203359attR0.0Showinfo_outline
48complement(1203315..1203678)tRNA0.0Showinfo_outline
49complement(1203823..1204305)PHAGE_Staphy_StauST398_5_NC_023500: SsrA-binding protein; NCTC13368_01208; phage(gi588498309)5.87e-39Showinfo_outline

Region 2, total 20 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(1428458..1429486)PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; NCTC13368_01428; phage(gi100150)2.37e-08Showinfo_outline
21429598..1429609attL0.0Showinfo_outline
3complement(1429850..1429924)tRNA0.0Showinfo_outline
41430120..1431295PHAGE_Stx2_c_86_NC_008464: integrase; NCTC13368_01430; phage(gi116222028)0.0Showinfo_outline
51431642..1431770Uncharacterised protein; NCTC13368_014310.0Showinfo_outline
6complement(1432404..1433042)PHAGE_Entero_Arya_NC_031048: hypothetical protein; NCTC13368_01432; phage(gi100057)5.14e-65Showinfo_outline
7complement(1433039..1433254)PHAGE_Vibrio_pYD38_A_NC_021534: hypothetical protein; NCTC13368_01433; phage(gi514051013)2.14e-46Showinfo_outline
8complement(1433254..1433628)PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; NCTC13368_01434; phage(gi423262430)2.74e-10Showinfo_outline
9complement(1433621..1433965)Uncharacterised protein; NCTC13368_014350.0Showinfo_outline
10complement(1433962..1434096)Uncharacterised protein; NCTC13368_014360.0Showinfo_outline
11complement(1434093..1434878)PHAGE_Burkho_KS9_NC_013055: chromosome partitioning protein gp35; NCTC13368_01437; phage(gi255033718)2.10e-81Showinfo_outline
12complement(1434878..1435177)PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC13368_01438; phage(gi428782699)2.53e-19Showinfo_outline
13complement(1435587..1436741)Uncharacterized conserved protein; NCTC13368_014390.0Showinfo_outline
14complement(1436912..1437388)Uncharacterised protein; NCTC13368_014400.0Showinfo_outline
151437782..1438234PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC13368_01441; phage(gi428782704)3.51e-92Showinfo_outline
161438641..1439594PHAGE_Shigel_SfII_NC_021857: O protein family protein; NCTC13368_01442; phage(gi526244675)1.10e-167Showinfo_outline
171439591..1440400PHAGE_Salmon_118970_sal3_NC_031940: prohead core protein protease; NCTC13368_01443; phage(gi100061)2.51e-141Showinfo_outline
181440410..1440787PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; NCTC13368_01444; phage(gi100062)1.27e-64Showinfo_outline
191440986..1441780PHAGE_Shigel_SfII_NC_021857: hypothetical protein; NCTC13368_01445; phage(gi526244681)3.93e-130Showinfo_outline
201442033..1442044attR0.0Showinfo_outline

Region 3, total 26 CDS

#CDS PositionBLAST HitE-ValueSequence
11444918..1445229PHAGE_Salmon_ST64T_NC_004348: holin protein; NCTC13368_01448; phage(gi24371577)7.45e-48Showinfo_outline
21445226..1445765PHAGE_Erwini_vB_EamP_S6_NC_019514: endolysin; NCTC13368_01449; phage(gi422935930)1.21e-81Showinfo_outline
31445762..1446109PHAGE_Pseudo_vB_Pae_Kakheti25_NC_017864: holin; NCTC13368_01450; phage(gi388542661)7.09e-10Showinfo_outline
41446106..1446381PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC13368_01451; phage(gi428782715)3.18e-35Showinfo_outline
51447102..1447347PHAGE_Salmon_SPN9CC_NC_017985: hypothetical protein; NCTC13368_01452; phage(gi389060534)1.31e-11Showinfo_outline
61447428..1447613PHAGE_Entero_HK629_NC_019711: hypothetical protein; NCTC13368_01453; phage(gi428782043)1.92e-07Showinfo_outline
71447671..1448012PHAGE_Entero_HK633_NC_019719: hypothetical protein; NCTC13368_01454; phage(gi428782588)4.03e-61Showinfo_outline
81448195..1448659PHAGE_Entero_mEp235_NC_019708: terminase small subunit; NCTC13368_01455; phage(gi428781811)3.97e-32Showinfo_outline
91448613..1449833PHAGE_Entero_mEp235_NC_019708: terminase large subunit; NCTC13368_01456; phage(gi428781812)2.54e-64Showinfo_outline
101450356..1451663PHAGE_Entero_mEp235_NC_019708: portal protein; NCTC13368_01457; phage(gi428781813)0.0Showinfo_outline
111451676..1452524PHAGE_Entero_mEp235_NC_019708: head maturation protease; NCTC13368_01458; phage(gi428781814)6.17e-165Showinfo_outline
121452534..1453751PHAGE_Entero_mEp235_NC_019708: major head subunit; NCTC13368_01459; phage(gi428781815)0.0Showinfo_outline
131453794..1454045PHAGE_Entero_mEp235_NC_019708: head-tail connector I; NCTC13368_01460; phage(gi428781816)1.42e-15Showinfo_outline
141454443..1454640PHAGE_Entero_mEp235_NC_019708: hypothetical protein; NCTC13368_01461; phage(gi428781818)1.45e-30Showinfo_outline
151454642..1454974PHAGE_Entero_mEp235_NC_019708: hypothetical protein; NCTC13368_01462; phage(gi428781819)2.45e-70Showinfo_outline
161454967..1455506PHAGE_Entero_mEp235_NC_019708: hypothetical protein; NCTC13368_01463; phage(gi428781820)8.30e-103Showinfo_outline
171455503..1455868PHAGE_Entero_mEp235_NC_019708: hypothetical protein; NCTC13368_01464; phage(gi428781821)2.25e-63Showinfo_outline
181455925..1456416PHAGE_Entero_mEp235_NC_019708: major tail subunit; NCTC13368_01465; phage(gi428781822)4.80e-80Showinfo_outline
191456460..1456813PHAGE_Entero_mEp235_NC_019708: tail assembly chaperone; NCTC13368_01466; phage(gi428781823)2.62e-47Showinfo_outline
201456846..1457109PHAGE_Entero_mEp235_NC_019708: hypothetical protein; NCTC13368_01467; phage(gi428781824)9.87e-10Showinfo_outline
211457688..1460135PHAGE_Entero_mEp235_NC_019708: tail length tape measure protein; NCTC13368_01468; phage(gi428781825)1.34e-175Showinfo_outline
221460602..1461084PHAGE_Pseudo_D3_NC_002484: hypothetical protein; NCTC13368_01469; phage(gi9635614)3.22e-34Showinfo_outline
231461094..1461462Uncharacterised protein; NCTC13368_014700.0Showinfo_outline
24complement(1461443..1461712)Domain of uncharacterised function (DUF1883); NCTC13368_014710.0Showinfo_outline
251461842..1462222PHAGE_Pseudo_phi297_NC_016762: hypothetical protein; NCTC13368_01472; phage(gi374531303)9.75e-24Showinfo_outline
261462219..1465287PHAGE_Pseudo_PS_1_NC_029066: tail protein; NCTC13368_01473; phage(gi985757719)1.55e-77Showinfo_outline

Region 4, total 45 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(3118416..3121484)PHAGE_Pseudo_PS_1_NC_029066: tail protein; NCTC13368_03081; phage(gi985757719)8.29e-75Showinfo_outline
23119395..3119406attL0.0Showinfo_outline
3complement(3121481..3121861)PHAGE_Pseudo_phi297_NC_016762: hypothetical protein; NCTC13368_03082; phage(gi374531303)9.75e-24Showinfo_outline
4complement(3121872..3122354)PHAGE_Pseudo_D3_NC_002484: hypothetical protein; NCTC13368_03083; phage(gi9635614)2.42e-35Showinfo_outline
5complement(3122821..3125244)PHAGE_Entero_mEp235_NC_019708: tail length tape measure protein; NCTC13368_03084; phage(gi428781825)1.31e-164Showinfo_outline
6complement(3125733..3125996)PHAGE_Entero_mEp235_NC_019708: hypothetical protein; NCTC13368_03085; phage(gi428781824)4.33e-11Showinfo_outline
7complement(3126029..3126382)PHAGE_Entero_mEp235_NC_019708: tail assembly chaperone; NCTC13368_03086; phage(gi428781823)2.62e-47Showinfo_outline
8complement(3126426..3126917)PHAGE_Entero_mEp235_NC_019708: major tail subunit; NCTC13368_03087; phage(gi428781822)2.35e-79Showinfo_outline
9complement(3126974..3127339)PHAGE_Entero_mEp235_NC_019708: hypothetical protein; NCTC13368_03088; phage(gi428781821)5.50e-63Showinfo_outline
10complement(3127336..3127875)PHAGE_Entero_mEp235_NC_019708: hypothetical protein; NCTC13368_03089; phage(gi428781820)2.91e-101Showinfo_outline
11complement(3127868..3128200)PHAGE_Entero_mEp235_NC_019708: hypothetical protein; NCTC13368_03090; phage(gi428781819)2.24e-69Showinfo_outline
12complement(3128484..3128801)PHAGE_Shigel_SfII_NC_021857: head-tail connector protein; NCTC13368_03091; phage(gi526244642)3.63e-27Showinfo_outline
13complement(3128879..3130117)PHAGE_Entero_SfV_NC_003444: capsid; NCTC13368_03092; phage(gi19548995)0.0Showinfo_outline
14complement(3130127..3130726)PHAGE_Entero_SfV_NC_003444: capsid protease; NCTC13368_03093; phage(gi19548994)1.57e-119Showinfo_outline
15complement(3130719..3131945)PHAGE_Entero_SfV_NC_003444: portal protein; NCTC13368_03094; phage(gi19548993)0.0Showinfo_outline
16complement(3131935..3132096)membrane protein; NCTC13368_030950.0Showinfo_outline
17complement(3132093..3133844)PHAGE_Entero_mEp235_NC_019708: terminase large subunit; NCTC13368_03096; phage(gi428781812)0.0Showinfo_outline
18complement(3133848..3134345)PHAGE_Entero_mEp235_NC_019708: terminase small subunit; NCTC13368_03097; phage(gi428781811)1.63e-83Showinfo_outline
19complement(3134503..3134853)PHAGE_Entero_mEp235_NC_019708: putative HNH endonuclease; NCTC13368_03098; phage(gi428781871)3.31e-62Showinfo_outline
20complement(3134976..3135410)Uncharacterised protein; NCTC13368_030990.0Showinfo_outline
21complement(3135509..3135811)PHAGE_Salmon_ST160_NC_014900: hypothetical protein; NCTC13368_03100; phage(gi318065946)4.52e-09Showinfo_outline
22complement(3136294..3136569)PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC13368_03101; phage(gi428782715)1.64e-36Showinfo_outline
23complement(3136566..3136913)PHAGE_Pseudo_vB_Pae_Kakheti25_NC_017864: holin; NCTC13368_03102; phage(gi388542661)2.99e-09Showinfo_outline
24complement(3136910..3137449)PHAGE_Erwini_vB_EamP_S6_NC_019514: endolysin; NCTC13368_03103; phage(gi422935930)1.47e-82Showinfo_outline
25complement(3137446..3137757)PHAGE_Salmon_ST64T_NC_004348: holin protein; NCTC13368_03104; phage(gi24371577)7.45e-48Showinfo_outline
26complement(3137929..3138501)Uncharacterised protein; NCTC13368_031050.0Showinfo_outline
27complement(3139256..3139834)PHAGE_Salmon_vB_SosS_Oslo_NC_018279: antitermination protein Q; NCTC13368_03106; phage(gi399528832)1.40e-05Showinfo_outline
28complement(3139848..3140756)PHAGE_Salmon_118970_sal3_NC_031940: site-specific RNA endonuclease; NCTC13368_03107; phage(gi100127)4.39e-152Showinfo_outline
29complement(3140841..3141218)PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; NCTC13368_03108; phage(gi100062)2.85e-64Showinfo_outline
30complement(3141228..3142037)PHAGE_Salmon_118970_sal3_NC_031940: prohead core protein protease; NCTC13368_03109; phage(gi100061)3.05e-141Showinfo_outline
31complement(3142034..3142948)PHAGE_Erwini_PEp14_NC_016767: putative phage O family protein; NCTC13368_03110; phage(gi374531901)2.37e-41Showinfo_outline
32complement(3143355..3143816)PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC13368_03111; phage(gi428782704)1.63e-95Showinfo_outline
333144191..3144886PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; NCTC13368_03112; phage(gi100116)1.57e-117Showinfo_outline
343145249..3145548PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC13368_03113; phage(gi428782699)2.10e-17Showinfo_outline
353145548..3146333PHAGE_Burkho_phi6442_NC_009235: gp57; NCTC13368_03114; phage(gi134288621)6.85e-81Showinfo_outline
363146330..3146464Uncharacterised protein; NCTC13368_031150.0Showinfo_outline
373146461..3146805Uncharacterised protein; NCTC13368_031160.0Showinfo_outline
383146798..3147280PHAGE_Pectob_ZF40_NC_019522: putative methylase; NCTC13368_03117; phage(gi422936660)2.25e-89Showinfo_outline
393147277..3147501Uncharacterised protein; NCTC13368_031180.0Showinfo_outline
403147494..3147772PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; NCTC13368_03119; phage(gi423262430)1.20e-10Showinfo_outline
413147904..3147915attR0.0Showinfo_outline
423148297..3149439PHAGE_Entero_mEp235_NC_019708: integrase; NCTC13368_03120; phage(gi428781836)4.48e-79Showinfo_outline
43complement(3149552..3150802)Isocitrate dehydrogenase; NCTC13368_031210.0Showinfo_outline
443151043..3151693ribosomal large subunit pseudouridine synthase E; NCTC13368_031220.0Showinfo_outline
453151710..3152168PHAGE_Strept_SF3_NC_028952: hypothetical protein; NCTC13368_03123; phage(gi971759841)3.85e-07Showinfo_outline

Region 5, total 48 CDS

#CDS PositionBLAST HitE-ValueSequence
13267775..3267810attL0.0Showinfo_outline
2complement(3271913..3272161)PHAGE_Salmon_SP_004_NC_021774: Ogr; NCTC13368_03241; phage(gi526003639)1.77e-13Showinfo_outline
3complement(3272206..3273360)PHAGE_Entero_P88_NC_026014: gene D protein; NCTC13368_03242; phage(gi744692751)0.0Showinfo_outline
43273514..3274695PHAGE_Entero_P88_NC_026014: tail sheath monomer; NCTC13368_03243; phage(gi744692749)0.0Showinfo_outline
53274695..3275210PHAGE_Entero_P88_NC_026014: major tail tube protein; NCTC13368_03244; phage(gi744692748)5.15e-83Showinfo_outline
63275265..3275564PHAGE_Entero_P88_NC_026014: tail protein; NCTC13368_03245; phage(gi744692747)4.39e-14Showinfo_outline
73275727..3278663PHAGE_Entero_P88_NC_026014: tail tape measure protein; NCTC13368_03246; phage(gi744692745)0.0Showinfo_outline
83278675..3279163PHAGE_Entero_P88_NC_026014: tail protein; NCTC13368_03247; phage(gi744692744)3.71e-71Showinfo_outline
93279438..3280292Uncharacterised protein; NCTC13368_032480.0Showinfo_outline
10complement(3280392..3281573)PHAGE_Entero_186_NC_001317: tail fiber protein H; NCTC13368_03249; phage(gi9634074)1.47e-58Showinfo_outline
11complement(3281579..3281767)Uncharacterised protein; NCTC13368_032500.0Showinfo_outline
12complement(3281760..3282023)Uncharacterised protein; NCTC13368_032510.0Showinfo_outline
13complement(3282026..3284395)PHAGE_Escher_Cba120_NC_016570: tailspike protein; NCTC13368_03252; phage(gi372199531)2.33e-09Showinfo_outline
14complement(3284400..3284996)PHAGE_Entero_P88_NC_026014: tail protein; NCTC13368_03253; phage(gi744692738)2.96e-50Showinfo_outline
15complement(3284989..3285888)PHAGE_Entero_P88_NC_026014: baseplate assembly protein J; NCTC13368_03254; phage(gi744692737)8.19e-128Showinfo_outline
16complement(3285875..3286243)PHAGE_Entero_P88_NC_026014: lysozyme family baseplate assembly protein; NCTC13368_03255; phage(gi744692736)1.60e-38Showinfo_outline
17complement(3286240..3286824)PHAGE_Entero_P88_NC_026014: baseplate assembly protein V; NCTC13368_03256; phage(gi744692735)8.27e-83Showinfo_outline
18complement(3286824..3287465)PHAGE_Entero_P88_NC_026014: tail protein; NCTC13368_03257; phage(gi744692734)6.55e-58Showinfo_outline
19complement(3287462..3287920)PHAGE_Entero_P88_NC_026014: tail completion protein; NCTC13368_03258; phage(gi744692733)3.09e-44Showinfo_outline
20complement(3288065..3288460)PHAGE_Entero_P88_NC_026014: hypothetical protein; NCTC13368_03259; phage(gi744692732)3.03e-08Showinfo_outline
21complement(3288457..3289008)PHAGE_Mannhe_phiMHaA1_NC_008201: endolysin; NCTC13368_03260; phage(gi109289945)2.67e-42Showinfo_outline
22complement(3289005..3289286)Uncharacterised protein; NCTC13368_032610.0Showinfo_outline
23complement(3289277..3289477)PHAGE_Entero_P88_NC_026014: tail component protein; NCTC13368_03262; phage(gi744692729)7.78e-23Showinfo_outline
24complement(3289477..3289974)PHAGE_Entero_P88_NC_026014: head completion-stabilization protein; NCTC13368_03263; phage(gi744692728)3.15e-35Showinfo_outline
25complement(3290077..3290991)PHAGE_Entero_P88_NC_026014: terminase endonuclease subunit; NCTC13368_03264; phage(gi744692727)1.20e-85Showinfo_outline
26complement(3291039..3292088)PHAGE_Entero_P88_NC_026014: major capsid protein; NCTC13368_03265; phage(gi744692726)1.48e-122Showinfo_outline
27complement(3292113..3292946)PHAGE_Entero_P88_NC_026014: capsid scaffolding protein; NCTC13368_03266; phage(gi744692725)8.34e-130Showinfo_outline
283293106..3294827PHAGE_Entero_P88_NC_026014: terminase ATPase subunit; NCTC13368_03267; phage(gi744692724)0.0Showinfo_outline
293294827..3295879PHAGE_Entero_P88_NC_026014: PBSX family portal protein; NCTC13368_03268; phage(gi744692723)9.47e-178Showinfo_outline
30complement(3296337..3296699)Uncharacterised protein; NCTC13368_032690.0Showinfo_outline
31complement(3297284..3299932)PHAGE_Salmon_SEN5_NC_028701: replication protein; NCTC13368_03270; phage(gi966201551)0.0Showinfo_outline
32complement(3299892..3300221)Uncharacterised protein; NCTC13368_032710.0Showinfo_outline
33complement(3300252..3300413)Uncharacterised protein; NCTC13368_032720.0Showinfo_outline
34complement(3300436..3300588)Uncharacterised protein; NCTC13368_032730.0Showinfo_outline
35complement(3300599..3300772)Uncharacterised protein; NCTC13368_032740.0Showinfo_outline
36complement(3300759..3301727)PHAGE_Salmon_SEN5_NC_028701: methyl-directed repair DNA adenine methylase; NCTC13368_03275; phage(gi966201549)1.10e-98Showinfo_outline
37complement(3301736..3302317)PHAGE_Salmon_118970_sal3_NC_031940: zinc finger protein; NCTC13368_03276; phage(gi100107)2.03e-40Showinfo_outline
38complement(3302314..3302559)Uncharacterised protein; NCTC13368_032770.0Showinfo_outline
39complement(3302607..3302885)Uncharacterised protein; NCTC13368_032780.0Showinfo_outline
40complement(3302882..3303121)PHAGE_Entero_P88_NC_026014: DNA modification methyltransferase; NCTC13368_03279; phage(gi744692706)1.40e-05Showinfo_outline
41complement(3303133..3303396)PHAGE_Salmon_SEN5_NC_028701: hypothetical protein; NCTC13368_03280; phage(gi966201595)1.47e-05Showinfo_outline
42complement(3303522..3303854)Regulatory phage protein cox; NCTC13368_032810.0Showinfo_outline
433303949..3304251PHAGE_Entero_P2_NC_001895: gpC; NCTC13368_03282; phage(gi9630358)4.71e-37Showinfo_outline
443304339..3305346PHAGE_Salmon_SEN5_NC_028701: integrase; NCTC13368_03283; phage(gi966201588)1.66e-126Showinfo_outline
45complement(3305442..3306689)glucose-1-phosphatase; NCTC13368_032840.0Showinfo_outline
463306842..3307291HxlR family transcriptional regulator; NCTC13368_032850.0Showinfo_outline
473307407..3308195PHAGE_Prochl_P_TIM68_NC_028955: hypothetical protein; NCTC13368_03286; phage(gi971760361)1.15e-06Showinfo_outline
483319020..3319055attR0.0Showinfo_outline

Region 6, total 23 CDS

#CDS PositionBLAST HitE-ValueSequence
13475908..3475919attL0.0Showinfo_outline
23478857..3479120PHAGE_Cronob_vB_CsaM_GAP32_NC_019401: glutaredoxin; NCTC13368_03434; phage(gi414087106)3.94e-19Showinfo_outline
3complement(3479127..3479510)inner membrane protein; NCTC13368_034350.0Showinfo_outline
43479778..3481463TrkA, Potassium channel-family protein; NCTC13368_034360.0Showinfo_outline
5complement(3481991..3482911)PHAGE_Salmon_Fels_2_NC_010463: tail protein; NCTC13368_03438; phage(gi169936019)0.0Showinfo_outline
6complement(3482908..3483414)PHAGE_Salmon_Fels_2_NC_010463: baseplate assembly protein; NCTC13368_03439; phage(gi169936032)6.06e-76Showinfo_outline
7complement(3483401..3483763)PHAGE_Salmon_Fels_2_NC_010463: baseplate wedge subunit; NCTC13368_03440; phage(gi169936033)2.52e-62Showinfo_outline
8complement(3483760..3484356)PHAGE_Salmon_Fels_2_NC_010463: P2 gpV-like protein; NCTC13368_03441; phage(gi169936034)1.22e-97Showinfo_outline
9complement(3484408..3485610)PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; NCTC13368_03442; phage(gi31415804)5.04e-06Showinfo_outline
103485842..3486684PHAGE_Salmon_Fels_2_NC_010463: terminase ATPase subunit; NCTC13368_03443; phage(gi169936048)0.0Showinfo_outline
113486684..3487706PHAGE_Salmon_Fels_2_NC_010463: portal vertex protein; NCTC13368_03444; phage(gi169936049)0.0Showinfo_outline
12complement(3488176..3488823)Serine protease splF precursor; NCTC13368_034450.0Showinfo_outline
13complement(3489108..3489293)PHAGE_Salmon_Fels_2_NC_010463: hypothetical protein; NCTC13368_03446; phage(gi169936053)1.40e-12Showinfo_outline
14complement(3489409..3490779)PHAGE_Salmon_Fels_2_NC_010463: P2 gpA-like protein; NCTC13368_03447; phage(gi169936054)0.0Showinfo_outline
15complement(3490928..3491164)PHAGE_Salmon_Fels_2_NC_010463: hypothetical protein; NCTC13368_03448; phage(gi169936057)1.10e-16Showinfo_outline
16complement(3491232..3491573)PHAGE_Salmon_Fels_2_NC_010463: hypothetical protein; NCTC13368_03449; phage(gi169936058)3.10e-63Showinfo_outline
17complement(3491552..3491737)PHAGE_Salmon_Fels_2_NC_010463: hypothetical protein; NCTC13368_03450; phage(gi169936060)5.28e-13Showinfo_outline
18complement(3491745..3492254)PHAGE_Salmon_Fels_2_NC_010463: bacteriophage regulatory protein CII; NCTC13368_03451; phage(gi169936061)3.05e-106Showinfo_outline
19complement(3492287..3492508)PHAGE_Haemop_HP2_NC_003315: orf2(S)cox; NCTC13368_03452; phage(gi17981819)2.02e-08Showinfo_outline
203492604..3493194PHAGE_Salmon_Fels_2_NC_010463: P2 CI-like protein; NCTC13368_03453; phage(gi169936063)9.23e-49Showinfo_outline
213493219..3495213Predicted ATP-binding protein involved in virulence; NCTC13368_034540.0Showinfo_outline
223495088..3495099attR0.0Showinfo_outline
233495285..3496337PHAGE_Salmon_Fels_2_NC_010463: integrase; NCTC13368_03455; phage(gi169936064)7.37e-127Showinfo_outline
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Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 5528186 bps
Phages: 6
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

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