Submission Results

Sequence Name: Not Available

GenBank Accession Number: UGLP00000000.1

GenInfo (GI) Number: 0000000000

Download Results: UGLP00000000.1.PHASTER.zip

gi|00000000|ref|UGLP00000000.1| Klebsiella pneumoniae strain NCTC7427, whole genome shotgun 5295017, gc%: 57.54%

Download summary as .txt file: summary.txt file_download

Total: 4 prophage regions have been identified, of which 1 regions are intact, 3 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
127.9Kbincomplete50431033161-1061072 info_outlinePHAGE_Entero_VT2_Sakai_NC_000902(7)52.49%Show info_outline
214.5Kbincomplete4081068263-1082855 info_outlinePHAGE_Burkho_Bcep22_NC_005262(2)49.80%Show info_outline
349.1Kbintact150551484867-1534029 info_outlinePHAGE_Salmon_118970_sal3_NC_031940(16)51.60%Show info_outline
425.7Kbincomplete50165269184-5294958 info_outlinePHAGE_Shigel_Sf6_NC_005344(2)49.99%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|UGLP00000000.1| Klebsiella pneumoniae strain NCTC7427, whole genome shotgun 5295017, gc%: 57.54%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 44 CDS

#CDS PositionBLAST HitE-ValueSequence
11033161..1034069PHAGE_Burkho_phi1026b_NC_005284: gp58; NCTC7427_00987; phage(gi38707948)6.96e-07Showinfo_outline
2complement(1034079..1034960)Uncharacterised protein; NCTC7427_009880.0Showinfo_outline
3complement(1035329..1035811)Tryptophan synthase subunit beta like protein; NCTC7427_009890.0Showinfo_outline
4complement(1036148..1036348)PHAGE_Entero_HK633_NC_019719: hypothetical protein; NCTC7427_00990; phage(gi428782548)1.72e-38Showinfo_outline
5complement(1036345..1036581)PHAGE_Entero_VT2_Sakai_NC_000902: DksA-like zinc finger domain containing protein; NCTC7427_00991; phage(gi52473540)1.50e-17Showinfo_outline
6complement(1036578..1037282)PHAGE_Sinorh_phiLM21_NC_029046: hypothetical protein; NCTC7427_00992; phage(gi981221041)4.69e-24Showinfo_outline
7complement(1037279..1037845)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; NCTC7427_00993; phage(gi100097)4.59e-48Showinfo_outline
8complement(1037842..1038063)PHAGE_Entero_VT2_Sakai_NC_000902: hypothetical protein; NCTC7427_00994; phage(gi9633406)1.38e-08Showinfo_outline
9complement(1038060..1039184)PHAGE_Salmon_9NA_NC_025443: putative DNA methylase; NCTC7427_00995; phage(gi712914017)2.56e-106Showinfo_outline
10complement(1039181..1039339)PHAGE_Entero_VT2_Sakai_NC_000902: hypothetical protein; NCTC7427_00996; phage(gi9633408)4.56e-16Showinfo_outline
11complement(1039336..1039959)PHAGE_Cellul_phi10:1_NC_021802: exonuclease, YqaJ (recombinase); NCTC7427_00997; phage(gi526178112)1.95e-58Showinfo_outline
12complement(1039956..1040459)PHAGE_Cellul_phi10:1_NC_021802: hypothetical protein; NCTC7427_00998; phage(gi526178111)4.16e-09Showinfo_outline
13complement(1040471..1040755)PHAGE_Entero_phi80_NC_021190: host RecBCD/SbcCD enzymes inhibitor; NCTC7427_00999; phage(gi824479615)3.80e-21Showinfo_outline
14complement(1040844..1041038)Uncharacterised protein; NCTC7427_010000.0Showinfo_outline
15complement(1041031..1041141)Uncharacterised protein; NCTC7427_010010.0Showinfo_outline
16complement(1041678..1042430)PHAGE_Entero_mEp235_NC_019708: prophage repressor; NCTC7427_01002; phage(gi428781850)1.68e-87Showinfo_outline
171042471..1042704PHAGE_Entero_BP_4795_NC_004813: putative regulatory protein Cro; NCTC7427_01003; phage(gi157166009)5.21e-33Showinfo_outline
181042723..1043043PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage transcriptional activator; Lambda gpCII analog; NCTC7427_01004; phage(gi169257278)1.95e-49Showinfo_outline
191043130..1043276Uncharacterised protein; NCTC7427_010050.0Showinfo_outline
201043269..1044168PHAGE_Entero_VT2_Sakai_NC_000902: similar to O protein of bacteriophage HK022; NCTC7427_01006; phage(gi9633422)6.50e-108Showinfo_outline
211044158..1045588PHAGE_Entero_VT2_Sakai_NC_000902: similar to P protein of bacteriophage HK022; NCTC7427_01007; phage(gi9633423)0.0Showinfo_outline
221045588..1045890PHAGE_Serrat_phiMAM1_NC_020083: putative transcriptional regulator-HTH domain; NCTC7427_01008; phage(gi440789434)7.84e-07Showinfo_outline
231045887..1046435PHAGE_Entero_Tyrion_NC_031077: hypothetical protein; NCTC7427_01009; phage(gi100049)1.51e-14Showinfo_outline
241046432..1046692PHAGE_Salmon_SPN1S_NC_016761: hypothetical protein; NCTC7427_01010; phage(gi374531241)8.06e-42Showinfo_outline
251046689..1046802PHAGE_Salmon_epsilon34_NC_011976: hypothetical protein; NCTC7427_01011; phage(gi221328647)7.08e-13Showinfo_outline
261046799..1047461PHAGE_Entero_UAB_Phi20_NC_031019: hypothetical protein; NCTC7427_01012; phage(gi100057)4.99e-39Showinfo_outline
271047461..1047673PHAGE_Entero_VT2_Sakai_NC_000902: hypothetical protein; NCTC7427_01013; phage(gi9633403)8.46e-15Showinfo_outline
281047670..1048524PHAGE_Shigel_POCJ13_NC_025434: EaA protein; NCTC7427_01014; phage(gi725949774)8.50e-43Showinfo_outline
291049093..1049827Uncharacterised protein; NCTC7427_010150.0Showinfo_outline
301050520..1050975PHAGE_Entero_HK225_NC_019717: NinB protein; NCTC7427_01016; phage(gi428782436)1.64e-72Showinfo_outline
311050975..1051145PHAGE_Escher_HK639_NC_016158: NinE; NCTC7427_01017; phage(gi356870663)3.98e-22Showinfo_outline
321051138..1051776PHAGE_Salmon_SPN3UB_NC_019545: NinG; NCTC7427_01018; phage(gi423262439)1.08e-109Showinfo_outline
331051773..1051913PHAGE_Phage_Gifsy_1_NC_010392: conserved hypothetical bacteriophage protein; NCTC7427_01019; phage(gi169257245)1.81e-12Showinfo_outline
341051910..1052551PHAGE_Salmon_ST64B_NC_004313: hypothetical protein; NCTC7427_01020; phage(gi23505493)2.37e-46Showinfo_outline
351052721..1052795tRNA0.0Showinfo_outline
361053066..1053380PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; NCTC7427_01022; phage(gi423262443)2.72e-61Showinfo_outline
371053383..1053886PHAGE_Salmon_SEN22_NC_028696: lysin; NCTC7427_01023; phage(gi966201366)9.01e-96Showinfo_outline
381053883..1054347PHAGE_Entero_phi80_NC_021190: endopeptidase; NCTC7427_01024; phage(gi824479637)2.64e-54Showinfo_outline
391054539..1055057PHAGE_Entero_phi80_NC_021190: phage regulatory protein Rha; NCTC7427_01025; phage(gi824479639)4.42e-128Showinfo_outline
401055117..1055857PHAGE_Entero_VT2_Sakai_NC_000902: hypothetical protein; NCTC7427_01026; phage(gi9633445)1.55e-20Showinfo_outline
411055861..1057192PHAGE_Salmon_SSU5_NC_018843: putative terminase large subunit; NCTC7427_01027; phage(gi410491412)1.79e-19Showinfo_outline
421057204..1058619Protein of uncharacterised function (DUF1073); NCTC7427_010280.0Showinfo_outline
431058616..1059446Uncharacterised protein; NCTC7427_010290.0Showinfo_outline
441059459..1061072PHAGE_Burkho_Bcep1_NC_005263: gp18; NCTC7427_01030; phage(gi38638625)1.18e-14Showinfo_outline

Region 2, total 11 CDS

#CDS PositionBLAST HitE-ValueSequence
11068263..1068275attL0.0Showinfo_outline
21072824..1074242PHAGE_Pelagi_HTVC010P_NC_020481: putative tail tubular protein B; NCTC7427_01046; phage(gi460042270)6.94e-05Showinfo_outline
31074244..1074948Uncharacterised protein; NCTC7427_010470.0Showinfo_outline
41074998..1075684PHAGE_Aeromo_CC2_NC_019538: hypothetical protein; NCTC7427_01048; phage(gi423261545)5.79e-06Showinfo_outline
51075779..1078307PHAGE_Burkho_KS10_NC_011216: hypothetical protein; NCTC7427_01049; phage(gi198449310)3.15e-96Showinfo_outline
61078319..1079056PHAGE_Burkho_KS10_NC_011216: hypothetical protein; NCTC7427_01050; phage(gi198449311)1.59e-13Showinfo_outline
71079293..1080351PHAGE_Erwini_PEp14_NC_016767: putative tail fiber protein; NCTC7427_01051; phage(gi374531868)3.63e-10Showinfo_outline
81080105..1080117attR0.0Showinfo_outline
9complement(1080440..1081600)PHAGE_Entero_HK633_NC_019719: integrase; NCTC7427_01052; phage(gi428782545)0.0Showinfo_outline
10complement(1081764..1081836)tRNA0.0Showinfo_outline
11complement(1081926..1082855)PHAGE_Entero_VT2phi_272_NC_028656: hypothetical protein; NCTC7427_01054; phage(gi966197797)8.19e-180Showinfo_outline

Region 3, total 60 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(1484867..1486129)PROPHAGE_Escher_CFT073: prophage P4 integrase; NCTC7427_01392; phage(gi26248270)0.0Showinfo_outline
2complement(1486291..1486366)tRNA0.0Showinfo_outline
31486697..1487614PHAGE_Burkho_phi1026b_NC_005284: gp58; NCTC7427_01394; phage(gi38707948)1.15e-07Showinfo_outline
41487721..1488671alkanesulfonate utilization operon LysR-family regulator CbI; NCTC7427_013950.0Showinfo_outline
51488750..1489691L,D-transpeptidase ErfK; NCTC7427_013960.0Showinfo_outline
6complement(1489890..1490126)Uncharacterised protein; NCTC7427_013970.0Showinfo_outline
7complement(1490427..1491122)LysR family transcriptional regulator; NCTC7427_013980.0Showinfo_outline
8complement(1491532..1491607)tRNA0.0Showinfo_outline
9complement(1491708..1492505)inner membrane protein; NCTC7427_014000.0Showinfo_outline
101492599..1492688tRNA0.0Showinfo_outline
111492626..1492690attL0.0Showinfo_outline
12complement(1492801..1493793)PHAGE_Salmon_ST64B_NC_004313: Integrase protein; NCTC7427_01402; phage(gi23505472)0.0Showinfo_outline
13complement(1493795..1494022)PHAGE_Salmon_ST64B_NC_004313: hypothetical protein; NCTC7427_01403; phage(gi23505473)7.57e-41Showinfo_outline
14complement(1494330..1495304)PHAGE_Salmon_SEN22_NC_028696: EaA protein; NCTC7427_01404; phage(gi966201339)1.99e-67Showinfo_outline
15complement(1495301..1495594)PHAGE_Klebsi_phiKO2_NC_005857: Gp43; NCTC7427_01405; phage(gi46402129)1.25e-58Showinfo_outline
16complement(1495594..1496364)PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC7427_01406; phage(gi428782697)8.44e-26Showinfo_outline
17complement(1496361..1496567)PHAGE_Vibrio_pYD38_A_NC_021534: hypothetical protein; NCTC7427_01407; phage(gi514051015)3.25e-43Showinfo_outline
18complement(1496564..1496824)PHAGE_Salmon_SPN1S_NC_016761: hypothetical protein; NCTC7427_01408; phage(gi374531241)1.69e-42Showinfo_outline
19complement(1496821..1497312)PHAGE_Vibrio_pYD38_A_NC_021534: hypothetical protein; NCTC7427_01409; phage(gi514051016)7.61e-12Showinfo_outline
20complement(1497309..1497443)Uncharacterised protein; NCTC7427_014100.0Showinfo_outline
21complement(1497440..1498225)PHAGE_Burkho_phi6442_NC_009235: gp57; NCTC7427_01411; phage(gi134288621)9.78e-82Showinfo_outline
22complement(1498225..1498524)PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC7427_01412; phage(gi428782699)6.68e-19Showinfo_outline
23complement(1498896..1499156)PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: CI repressor; NCTC7427_01413; phage(gi971749642)1.69e-22Showinfo_outline
241499786..1500349PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC7427_01414; phage(gi428782703)5.16e-12Showinfo_outline
251500372..1500839PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC7427_01415; phage(gi428782704)1.55e-90Showinfo_outline
261501246..1502160PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC7427_01416; phage(gi428782706)3.31e-34Showinfo_outline
271502157..1502966PHAGE_Salmon_118970_sal3_NC_031940: prohead core protein protease; NCTC7427_01417; phage(gi100061)1.08e-141Showinfo_outline
281502976..1503353PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; NCTC7427_01418; phage(gi100062)4.39e-65Showinfo_outline
291503438..1504346PHAGE_Entero_SfV_NC_003444: hypothetical protein; NCTC7427_01419; phage(gi19549032)1.09e-153Showinfo_outline
301504360..1504938Protein of uncharacterised function (DUF1133); NCTC7427_014200.0Showinfo_outline
311505517..1505903PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; NCTC7427_01422; phage(gi100130)6.20e-77Showinfo_outline
321506171..1506800PHAGE_Escher_HK639_NC_016158: endochitinase; NCTC7427_01423; phage(gi356870669)4.62e-139Showinfo_outline
331506998..1507231PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC7427_01424; phage(gi428782716)1.83e-20Showinfo_outline
341507302..1507541Uncharacterised protein; NCTC7427_014250.0Showinfo_outline
351507543..1507791Uncharacterised protein; NCTC7427_014260.0Showinfo_outline
361507878..1508261PHAGE_Klebsi_phiKO2_NC_005857: Gp63; NCTC7427_01427; phage(gi46402149)1.70e-85Showinfo_outline
371508328..1508573PHAGE_Entero_ST104_NC_005841: hypothetical protein; NCTC7427_01428; phage(gi46358693)2.96e-10Showinfo_outline
381508648..1509052PHAGE_Lactob_phiPYB5_NC_027982: hypothetical protein; NCTC7427_01429; phage(gi937456192)1.04e-06Showinfo_outline
391509153..1509494PHAGE_Entero_HK542_NC_019769: HNH endonuclease; NCTC7427_01430; phage(gi428783402)5.26e-62Showinfo_outline
401509677..1510141PHAGE_Entero_mEp235_NC_019708: terminase small subunit; NCTC7427_01431; phage(gi428781811)3.97e-32Showinfo_outline
411510095..1511837PHAGE_Azospi_Cd_NC_010355: putative terminase; NCTC7427_01432; phage(gi168495132)1.05e-87Showinfo_outline
421511837..1513144PHAGE_Entero_mEp235_NC_019708: portal protein; NCTC7427_01433; phage(gi428781813)0.0Showinfo_outline
431513157..1514011PHAGE_Entero_mEp235_NC_019708: head maturation protease; NCTC7427_01434; phage(gi428781814)3.13e-158Showinfo_outline
441514022..1515239PHAGE_Entero_mEp235_NC_019708: major head subunit; NCTC7427_01435; phage(gi428781815)0.0Showinfo_outline
451515282..1515623PHAGE_Entero_mEp235_NC_019708: head-tail connector I; NCTC7427_01436; phage(gi428781816)1.17e-15Showinfo_outline
461515623..1515949PHAGE_Entero_mEp235_NC_019708: head-tail connector II; NCTC7427_01437; phage(gi428781817)3.80e-55Showinfo_outline
471516296..1516745PHAGE_Entero_HK97_NC_002167: Gp10; NCTC7427_01438; phage(gi9634169)1.73e-89Showinfo_outline
481516742..1517089PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC7427_01439; phage(gi428782673)6.63e-41Showinfo_outline
491517146..1517850PHAGE_Entero_mEp234_NC_019715: major tail subunit; NCTC7427_01440; phage(gi428782264)9.57e-110Showinfo_outline
501517920..1518285PHAGE_Escher_HK75_NC_016160: tail assembly chaperone; NCTC7427_01441; phage(gi356870688)5.38e-42Showinfo_outline
511518288..1518593PHAGE_Entero_HK106_NC_019768: tail protein; NCTC7427_01442; phage(gi428783291)3.29e-38Showinfo_outline
521518668..1519189PHAGE_Pseudo_PAJU2_NC_011373: hypothetical protein; NCTC7427_01443; phage(gi209552445)2.10e-10Showinfo_outline
531519252..1522824PHAGE_Entero_HK544_NC_019767: tail length tape measure protein; NCTC7427_01444; phage(gi428783229)0.0Showinfo_outline
541522846..1523319PHAGE_Pseudo_PAJU2_NC_011373: hypothetical protein; NCTC7427_01445; phage(gi209552438)4.95e-46Showinfo_outline
551523306..1523782PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; NCTC7427_01446; phage(gi985757717)3.90e-36Showinfo_outline
561523795..1524175PHAGE_Pseudo_phi297_NC_016762: hypothetical protein; NCTC7427_01447; phage(gi374531303)1.16e-22Showinfo_outline
571524172..1527249PHAGE_Pseudo_PS_1_NC_029066: tail protein; NCTC7427_01448; phage(gi985757719)3.63e-73Showinfo_outline
581527323..1529476PHAGE_Burkho_KS10_NC_011216: hypothetical protein; NCTC7427_01449; phage(gi198449310)1.18e-103Showinfo_outline
591529489..1530223PHAGE_Burkho_KS10_NC_011216: hypothetical protein; NCTC7427_01450; phage(gi198449311)4.32e-14Showinfo_outline
601534029..1534093attR0.0Showinfo_outline

Region 4, total 18 CDS

#CDS PositionBLAST HitE-ValueSequence
15269184..5269588PHAGE_Entero_BP_4795_NC_004813: putative repressor protein CI; NCTC7427_05035; phage(gi157166008)1.18e-19Showinfo_outline
2complement(5269485..5269988)Uncharacterised protein; NCTC7427_050360.0Showinfo_outline
35270498..5270692Uncharacterised protein; NCTC7427_050370.0Showinfo_outline
45270781..5271065PHAGE_Entero_phi80_NC_021190: host RecBCD/SbcCD enzymes inhibitor; NCTC7427_05038; phage(gi824479615)3.80e-21Showinfo_outline
55271619..5271631attL0.0Showinfo_outline
65271666..5272001PHAGE_Cellul_phi10:1_NC_021802: exonuclease, YqaJ (recombinase); NCTC7427_05039; phage(gi526178112)6.95e-21Showinfo_outline
75272353..5273153PHAGE_Mycoba_Rufus_NC_028810: hypothetical protein; NCTC7427_05040; phage(gi971745406)3.53e-67Showinfo_outline
85273472..5273693PHAGE_Entero_933W_NC_000924: hypothetical protein; NCTC7427_05041; phage(gi9632476)1.38e-08Showinfo_outline
95273690..5274256PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; NCTC7427_05042; phage(gi100097)4.59e-48Showinfo_outline
105274253..5274594PHAGE_Mycoba_Myrna_NC_011273: gp63; NCTC7427_05043; phage(gi203454665)1.37e-18Showinfo_outline
115274549..5274956Uncharacterised protein; NCTC7427_050440.0Showinfo_outline
125274953..5275189PHAGE_Entero_SfI_NC_027339: hypothetical protein; NCTC7427_05045; phage(gi849250254)2.27e-18Showinfo_outline
135275186..5275479PHAGE_Entero_HK633_NC_019719: hypothetical protein; NCTC7427_05046; phage(gi428782548)4.36e-26Showinfo_outline
145275634..5275999PHAGE_Entero_IME10_NC_019501: integrase; NCTC7427_05047; phage(gi422934296)1.02e-66Showinfo_outline
155276049..5276795PHAGE_Entero_IME10_NC_019501: integrase; NCTC7427_05048; phage(gi422934296)3.74e-157Showinfo_outline
16complement(5276884..5277942)PHAGE_Erwini_PEp14_NC_016767: putative tail fiber protein; NCTC7427_05049; phage(gi374531868)3.63e-10Showinfo_outline
17complement(5278990..5281452)PHAGE_Burkho_KS10_NC_011216: hypothetical protein; NCTC7427_05050; phage(gi198449310)6.84e-76Showinfo_outline
185294958..5294970attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 5295017 bps
Phages: 4
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download