Submission Results

Sequence Name: Not Available

GenBank Accession Number: UGMC00000000.1

GenInfo (GI) Number: 0000000000

Download Results: UGMC00000000.1.PHASTER.zip

gi|00000000|ref|UGMC00000000.1| Klebsiella pneumoniae strain NCTC11674, whole genome shotgun 5541373, gc%: 57.16%

Download summary as .txt file: summary.txt file_download

Total: 4 prophage regions have been identified, of which 1 regions are intact, 1 regions are incomplete, and 2 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
111.4Kbincomplete3012109501-120978 info_outlinePHAGE_Entero_P4_NC_001609(6)50.28%Show info_outline
212.4Kbquestionable75111221861-1234349 info_outlinePHAGE_Entero_P4_NC_001609(7)48.70%Show info_outline
337.5Kbintact150401693147-1730729 info_outlinePHAGE_Entero_fiAA91_ss_NC_022750(20)52.66%Show info_outline
416.5Kbquestionable85194701434-4717991 info_outlinePHAGE_Entero_P4_NC_001609(8)49.68%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|UGMC00000000.1| Klebsiella pneumoniae strain NCTC11674, whole genome shotgun 5541373, gc%: 57.16%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 14 CDS

#CDS PositionBLAST HitE-ValueSequence
1109501..109520attL0.0Showinfo_outline
2110025..111533PHAGE_Entero_ES18_NC_006949: gp19; NCTC11674_00120; phage(gi62362232)2.38e-89Showinfo_outline
3complement(111802..114135)PHAGE_Entero_P4_NC_001609: DNA primase; NCTC11674_00121; phage(gi9627512)0.0Showinfo_outline
4complement(114147..114467)PHAGE_Entero_P4_NC_001609: hypothetical protein; NCTC11674_00122; phage(gi9627513)6.89e-65Showinfo_outline
5complement(114464..114691)Uncharacterised protein; NCTC11674_001230.0Showinfo_outline
6complement(114688..114882)PHAGE_Entero_P4_NC_001609: putative CI repressor; NCTC11674_00124; phage(gi9627516)7.68e-31Showinfo_outline
7complement(115233..115499)PHAGE_Entero_P4_NC_001609: transcriptional regulator; NCTC11674_00127; phage(gi9627517)1.98e-41Showinfo_outline
8116060..116797PHAGE_Entero_P4_NC_001609: head size determination protein sid; NCTC11674_00128; phage(gi9627518)1.91e-96Showinfo_outline
9116794..117039PHAGE_Entero_186_NC_001317: B protein; NCTC11674_00129; phage(gi9634083)9.77e-18Showinfo_outline
10117057..117623PHAGE_Entero_P4_NC_001609: amber mutation-suppressing protein; NCTC11674_00130; phage(gi9627520)6.65e-75Showinfo_outline
11complement(118354..118575)Uncharacterised protein; NCTC11674_001310.0Showinfo_outline
12complement(118667..119641)Uncharacterised protein; NCTC11674_001320.0Showinfo_outline
13complement(119634..120815)PROPHAGE_Escher_CFT073: putative prophage integrase; NCTC11674_00133; phage(gi26250313)0.0Showinfo_outline
14120978..120997attR0.0Showinfo_outline

Region 2, total 13 CDS

#CDS PositionBLAST HitE-ValueSequence
11221861..1221876attL0.0Showinfo_outline
2complement(1225143..1225931)PHAGE_Entero_P4_NC_001609: DNA primase; NCTC11674_01272; phage(gi9627512)1.38e-155Showinfo_outline
3complement(1225942..1227477)PHAGE_Entero_P4_NC_001609: DNA primase; NCTC11674_01273; phage(gi9627512)0.0Showinfo_outline
4complement(1227489..1227809)PHAGE_Entero_P4_NC_001609: hypothetical protein; NCTC11674_01274; phage(gi9627513)2.96e-63Showinfo_outline
5complement(1227806..1228033)Uncharacterised protein; NCTC11674_012750.0Showinfo_outline
6complement(1228030..1228224)PHAGE_Entero_P4_NC_001609: putative CI repressor; NCTC11674_01276; phage(gi9627516)1.94e-30Showinfo_outline
7complement(1228578..1228844)PHAGE_Entero_P4_NC_001609: transcriptional regulator; NCTC11674_01279; phage(gi9627517)1.78e-41Showinfo_outline
81229387..1230124PHAGE_Entero_P4_NC_001609: head size determination protein sid; NCTC11674_01280; phage(gi9627518)3.13e-94Showinfo_outline
91230121..1230366PHAGE_Entero_186_NC_001317: B protein; NCTC11674_01281; phage(gi9634083)1.32e-18Showinfo_outline
101230384..1230950PHAGE_Entero_P4_NC_001609: amber mutation-suppressing protein; NCTC11674_01282; phage(gi9627520)1.12e-75Showinfo_outline
111231606..1233024Uncharacterised protein; NCTC11674_012830.0Showinfo_outline
12complement(1233036..1234235)PHAGE_Entero_P4_NC_001609: integrase; NCTC11674_01284; phage(gi9627511)1.89e-79Showinfo_outline
131234349..1234364attR0.0Showinfo_outline

Region 3, total 42 CDS

#CDS PositionBLAST HitE-ValueSequence
11693147..1694010PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; NCTC11674_01724; phage(gi371496158)7.33e-13Showinfo_outline
21694021..1694794PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; NCTC11674_01725; phage(gi371496158)5.71e-33Showinfo_outline
3complement(1695035..1695931)transcription regulator; NCTC11674_017260.0Showinfo_outline
41696002..1696025attL0.0Showinfo_outline
5complement(1696110..1697123)PHAGE_Entero_fiAA91_ss_NC_022750: integrase; NCTC11674_01727; phage(gi557307610)1.91e-112Showinfo_outline
61697932..1698105PHAGE_Entero_WPhi_NC_005056: gp78; NCTC11674_01728; phage(gi33438930)4.10e-19Showinfo_outline
71698102..1698602PHAGE_Entero_fiAA91_ss_NC_022750: DNA replication protein; NCTC11674_01729; phage(gi557307614)1.85e-105Showinfo_outline
81698668..1698883PHAGE_Entero_fiAA91_ss_NC_022750: hypothetical protein; NCTC11674_01730; phage(gi557307617)7.93e-14Showinfo_outline
91698900..1699175PHAGE_Entero_fiAA91_ss_NC_022750: replication initiation protein; NCTC11674_01731; phage(gi557307618)3.25e-35Showinfo_outline
101699165..1701468PHAGE_Entero_fiAA91_ss_NC_022750: DNA replication; NCTC11674_01732; phage(gi557307619)0.0Showinfo_outline
111701542..1702789Uncharacterised protein; NCTC11674_017330.0Showinfo_outline
121702776..1704590nucleoside triphosphate hydrolase; NCTC11674_017340.0Showinfo_outline
13complement(1704924..1705967)PHAGE_Entero_fiAA91_ss_NC_022750: capsid portal protein; NCTC11674_01735; phage(gi557307585)0.0Showinfo_outline
14complement(1705967..1707736)PHAGE_Entero_fiAA91_ss_NC_022750: large terminase subunit; NCTC11674_01736; phage(gi557307593)0.0Showinfo_outline
151707902..1708756PHAGE_Entero_fiAA91_ss_NC_022750: capsid scaffold; NCTC11674_01737; phage(gi557307586)2.54e-170Showinfo_outline
161708830..1709888PHAGE_Salmon_SP_004_NC_021774: capsid protein; NCTC11674_01738; phage(gi526003617)0.0Showinfo_outline
171709892..1710635PHAGE_Entero_fiAA91_ss_NC_022750: small terminase subunit; NCTC11674_01739; phage(gi557307590)3.02e-125Showinfo_outline
181710732..1711238PHAGE_Entero_fiAA91_ss_NC_022750: capsid completion protein; NCTC11674_01740; phage(gi557307591)5.98e-93Showinfo_outline
191711238..1711441PHAGE_Entero_fiAA91_ss_NC_022750: tail protein; NCTC11674_01741; phage(gi557307592)6.82e-35Showinfo_outline
201711446..1711736PHAGE_Entero_186_NC_001317: holin; NCTC11674_01742; phage(gi9634064)4.05e-49Showinfo_outline
211711723..1712220PHAGE_Entero_fiAA91_ss_NC_022750: lysozyme; NCTC11674_01743; phage(gi557307624)9.85e-104Showinfo_outline
221712217..1712648PHAGE_Entero_fiAA91_ss_NC_022750: lysin; NCTC11674_01744; phage(gi557307623)2.72e-50Showinfo_outline
231712744..1713211PHAGE_Entero_fiAA91_ss_NC_022750: tail completion protein; NCTC11674_01745; phage(gi557307596)5.51e-80Showinfo_outline
241713204..1713653PHAGE_Salmon_SEN1_NC_029003: tail completion protein; NCTC11674_01746; phage(gi971764923)2.96e-58Showinfo_outline
251714034..1715131Uncharacterised protein; NCTC11674_017470.0Showinfo_outline
261715131..1715820Nucleotidyltransferase domain; NCTC11674_017480.0Showinfo_outline
271715846..1716940Uncharacterised protein; NCTC11674_017490.0Showinfo_outline
281717214..1717807PHAGE_Entero_fiAA91_ss_NC_022750: baseplate protein; NCTC11674_01750; phage(gi557307597)4.95e-104Showinfo_outline
291717804..1718151PHAGE_Yersin_L_413C_NC_004745: baseplate wedge subunit; NCTC11674_01751; phage(gi30065719)2.81e-61Showinfo_outline
301718156..1719064PHAGE_Erwini_ENT90_NC_019932: baseplate assembly protein; NCTC11674_01752; phage(gi431810943)3.87e-151Showinfo_outline
311719072..1719731PHAGE_Salmon_Fels_2_NC_010463: P2 gpI-like baseplate assembly protein; NCTC11674_01753; phage(gi169936031)1.28e-67Showinfo_outline
321719733..1721682PHAGE_Burkho_phiE255_NC_009237: gp26; NCTC11674_01754; phage(gi134288791)2.34e-08Showinfo_outline
331721693..1722811PHAGE_Salico_CGphi29_NC_020844: hypothetical protein; NCTC11674_01755; phage(gi472340194)3.25e-28Showinfo_outline
341722863..1723936PHAGE_Salmon_SEN5_NC_028701: tail fiber protein; NCTC11674_01756; phage(gi966201574)2.42e-44Showinfo_outline
351724047..1725228PHAGE_Entero_fiAA91_ss_NC_022750: major tail sheath; NCTC11674_01757; phage(gi557307603)0.0Showinfo_outline
361725242..1725757PHAGE_Entero_fiAA91_ss_NC_022750: major tail tube; NCTC11674_01758; phage(gi557307604)4.40e-92Showinfo_outline
371725818..1726093PHAGE_Entero_fiAA91_ss_NC_022750: tail protein; NCTC11674_01759; phage(gi557307605)1.66e-44Showinfo_outline
381726238..1726879PHAGE_Escher_pro147_NC_028896: hypothetical protein; NCTC11674_01760; phage(gi971753721)6.75e-103Showinfo_outline
391726827..1728677PHAGE_Entero_fiAA91_ss_NC_022750: tail length determinator; NCTC11674_01761; phage(gi557307606)0.0Showinfo_outline
401728692..1729168PHAGE_Escher_pro147_NC_028896: tail protein; NCTC11674_01762; phage(gi971753720)3.48e-93Showinfo_outline
411729168..1730325PHAGE_Entero_fiAA91_ss_NC_022750: putative phage control protein D; NCTC11674_01763; phage(gi557307608)0.0Showinfo_outline
421730729..1730752attR0.0Showinfo_outline

Region 4, total 21 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(4701434..4701901)PROPHAGE_Ralsto_GMI1000: ISRSO12-transposase ORFB protein; NCTC11674_04706; phage(gi17546158)3.76e-68Showinfo_outline
24702623..4702736Uncharacterised protein; NCTC11674_047080.0Showinfo_outline
3complement(4702919..4703041)Uncharacterised protein; NCTC11674_047090.0Showinfo_outline
44703166..4704293Pyocin large subunit; NCTC11674_047100.0Showinfo_outline
54704283..4704546Uncharacterised protein; NCTC11674_047110.0Showinfo_outline
64704685..4704936PROPHAGE_Xantho_33913: ISxac3 transposase; NCTC11674_04712; phage(gi21231087)1.10e-12Showinfo_outline
74705140..4705153attL0.0Showinfo_outline
8complement(4705337..4706032)Uncharacterised protein; NCTC11674_047130.0Showinfo_outline
9complement(4706421..4708754)PHAGE_Entero_P4_NC_001609: DNA primase; NCTC11674_04714; phage(gi9627512)0.0Showinfo_outline
10complement(4708766..4709086)PHAGE_Entero_P4_NC_001609: hypothetical protein; NCTC11674_04715; phage(gi9627513)4.76e-65Showinfo_outline
11complement(4709083..4709343)Uncharacterised protein; NCTC11674_047160.0Showinfo_outline
12complement(4709415..4709864)PHAGE_Entero_P4_NC_001609: hypothetical protein; NCTC11674_04717; phage(gi9627514)3.00e-67Showinfo_outline
13complement(4709857..4710156)PHAGE_Entero_P4_NC_001609: helper derepression protein; NCTC11674_04718; phage(gi9627515)3.62e-35Showinfo_outline
14complement(4710697..4710963)PHAGE_Entero_P4_NC_001609: transcriptional regulator; NCTC11674_04721; phage(gi9627517)6.34e-42Showinfo_outline
154711534..4712271PHAGE_Entero_P4_NC_001609: head size determination protein sid; NCTC11674_04722; phage(gi9627518)5.00e-93Showinfo_outline
164712268..4712513PHAGE_Entero_186_NC_001317: B protein; NCTC11674_04723; phage(gi9634083)4.49e-18Showinfo_outline
174712531..4713097PHAGE_Entero_P4_NC_001609: amber mutation-suppressing protein; NCTC11674_04724; phage(gi9627520)3.43e-75Showinfo_outline
18complement(4714069..4715346)Uncharacterised protein; NCTC11674_047250.0Showinfo_outline
19complement(4715742..4716392)PHAGE_Bacter_Sitara_NC_028854: DNA methyltransferase; NCTC11674_04726; phage(gi971749745)1.15e-27Showinfo_outline
20complement(4716558..4717820)PHAGE_Entero_P4_NC_001609: integrase; NCTC11674_04727; phage(gi9627511)0.0Showinfo_outline
214717991..4718004attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 5541373 bps
Phages: 4
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download