Submission Results

Sequence Name: Not Available

GenBank Accession Number: UGME00000000.1

GenInfo (GI) Number: 0000000000

Download Results: UGME00000000.1.PHASTER.zip

gi|00000000|ref|UGME00000000.1| Klebsiella pneumoniae strain NCTC11680, whole genome shotgun 5459316, gc%: 57.33%

Download summary as .txt file: summary.txt file_download

Total: 8 prophage regions have been identified, of which 6 regions are intact, 0 regions are incomplete, and 2 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
158.1Kbintact1506012537-70679 info_outlinePHAGE_Entero_mEp237_NC_019704(9)53.03%Show info_outline
237Kbintact15039176881-213926 info_outlinePHAGE_Salmon_SEN5_NC_028701(21)50.84%Show info_outline
345.6Kbintact12065956108-1001799 info_outlinePHAGE_Salmon_SEN34_NC_028699(27)52.37%Show info_outline
415.5Kbquestionable75181665081-1680659 info_outlinePHAGE_Entero_P4_NC_001609(7)49.61%Show info_outline
536.8Kbintact150472941063-2977945 info_outlinePHAGE_Salmon_RE_2010_NC_019488(33)54.09%Show info_outline
636.2Kbintact150453518602-3554886 info_outlinePHAGE_Salmon_RE_2010_NC_019488(33)52.39%Show info_outline
741.4Kbquestionable80474237936-4279357 info_outlinePHAGE_Phage_Gifsy_1_NC_010392(6)53.80%Show info_outline
869.3Kbintact120755383314-5452661 info_outlinePHAGE_Klebsi_phiKO2_NC_005857(46)51.40%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|UGME00000000.1| Klebsiella pneumoniae strain NCTC11680, whole genome shotgun 5459316, gc%: 57.33%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 64 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(12537..13058)PHAGE_Klebsi_PKP126_NC_031053: hypothetical protein; NCTC11680_00019; phage(gi100059)1.93e-13Showinfo_outline
2complement(13375..14469)PHAGE_Pseudo_PS_1_NC_029066: tail protein; NCTC11680_00020; phage(gi985757719)3.54e-46Showinfo_outline
3complement(14811..15188)putative kinase; NCTC11680_000210.0Showinfo_outline
4complement(15241..15453)kinase; NCTC11680_000220.0Showinfo_outline
5complement(16039..16218)PHAGE_Pseudo_PAJU2_NC_011373: hypothetical protein; NCTC11680_00023; phage(gi209552441)3.32e-07Showinfo_outline
6complement(16215..16595)PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_030909: hypothetical protein; NCTC11680_00024; phage(gi100020)3.26e-22Showinfo_outline
7complement(16605..17087)PHAGE_Pseudo_D3_NC_002484: hypothetical protein; NCTC11680_00025; phage(gi9635614)9.06e-37Showinfo_outline
8complement(17153..17548)PHAGE_Pseudo_PAJU2_NC_011373: hypothetical protein; NCTC11680_00026; phage(gi209552438)1.16e-37Showinfo_outline
9complement(17548..20430)PHAGE_Pseudo_MP29_NC_011613: putative tail component protein; NCTC11680_00027; phage(gi215480016)7.76e-72Showinfo_outline
10complement(20983..21339)Uncharacterised protein; NCTC11680_000280.0Showinfo_outline
11complement(21416..21592)Uncharacterised protein; NCTC11680_000290.0Showinfo_outline
12complement(21760..22242)PHAGE_Pseudo_phiPSA1_NC_024365: hypothetical protein; NCTC11680_00030; phage(gi658307708)3.13e-09Showinfo_outline
13complement(22278..23210)PHAGE_Vibrio_VpKK5_NC_026610: tail subunit; NCTC11680_00031; phage(gi764162154)2.10e-13Showinfo_outline
14complement(23234..23626)PHAGE_Acinet_Bphi_B1251_NC_019541: hypothetical protein; NCTC11680_00032; phage(gi423262013)1.90e-18Showinfo_outline
15complement(23623..24174)PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC11680_00033; phage(gi356870610)1.55e-36Showinfo_outline
16complement(24176..24559)PHAGE_Pseudo_YMC11/02/R656_NC_028657: hypothetical protein; NCTC11680_00034; phage(gi966197873)4.25e-28Showinfo_outline
17complement(24546..24779)Uncharacterised protein; NCTC11680_000350.0Showinfo_outline
18complement(24789..25043)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; NCTC11680_00036; phage(gi410491538)9.80e-29Showinfo_outline
19complement(25045..25440)PHAGE_Pseudo_YMC11/02/R656_NC_028657: hypothetical protein; NCTC11680_00037; phage(gi966197874)2.30e-18Showinfo_outline
20complement(25762..26715)PHAGE_Vibrio_pYD38_B_NC_021561: major capsid protein; NCTC11680_00038; phage(gi514231589)6.45e-148Showinfo_outline
21complement(26726..27511)PHAGE_Xantho_Xp15_NC_007024: putative phage structural protein; NCTC11680_00039; phage(gi66392059)2.10e-19Showinfo_outline
22complement(27596..28141)PHAGE_Pseudo_PS_1_NC_029066: head morphogenesis protein; NCTC11680_00040; phage(gi985757697)1.20e-60Showinfo_outline
23complement(28170..28709)PHAGE_Pseudo_PS_1_NC_029066: head morphogenesis protein; NCTC11680_00041; phage(gi985757697)5.42e-35Showinfo_outline
24complement(28693..30093)PHAGE_Paraco_vB_PmaS_IMEP1_NC_026608: portal protein; NCTC11680_00042; phage(gi764162030)3.20e-81Showinfo_outline
25complement(30093..31400)PHAGE_Acinet_vB_AbaS_TRS1_NC_031098: hypothetical protein; NCTC11680_00043; phage(gi100002)0.0Showinfo_outline
26complement(31378..32382)PHAGE_Burkho_BcepMigl_NC_019917: terminase small subunit; NCTC11680_00044; phage(gi431809885)3.14e-56Showinfo_outline
27complement(32931..33113)Uncharacterised protein; NCTC11680_000450.0Showinfo_outline
28complement(33245..33490)PHAGE_Entero_ST104_NC_005841: hypothetical protein; NCTC11680_00046; phage(gi46358693)7.13e-10Showinfo_outline
29complement(34304..34504)PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC11680_00047; phage(gi356870671)1.50e-19Showinfo_outline
30complement(34449..34724)PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC11680_00048; phage(gi428782715)5.07e-35Showinfo_outline
31complement(34721..35065)PHAGE_Pseudo_vB_Pae_Kakheti25_NC_017864: holin; NCTC11680_00049; phage(gi388542661)1.09e-09Showinfo_outline
32complement(35062..35601)PHAGE_Erwini_vB_EamP_S6_NC_019514: endolysin; NCTC11680_00050; phage(gi422935930)5.25e-82Showinfo_outline
33complement(35598..35909)PHAGE_Salmon_ST64T_NC_004348: holin protein; NCTC11680_00051; phage(gi24371577)7.45e-48Showinfo_outline
3436081..36093attL0.0Showinfo_outline
35complement(36726..37454)integrase; NCTC11680_000530.0Showinfo_outline
3637836..37847attL0.0Showinfo_outline
37complement(37992..38324)PHAGE_Salmon_ST64B_NC_004313: hypothetical protein; NCTC11680_00054; phage(gi23505494)4.49e-34Showinfo_outline
38complement(38403..39185)PHAGE_Cronob_ENT39118_NC_019934: antitermination protein; NCTC11680_00055; phage(gi431811056)1.24e-150Showinfo_outline
39complement(39182..39550)PHAGE_Escher_HK639_NC_016158: Rus Holliday junction resolvase; NCTC11680_00056; phage(gi356870665)7.34e-53Showinfo_outline
40complement(39547..40047)PHAGE_Erwini_phiEt88_NC_015295: hypothetical protein; NCTC11680_00057; phage(gi327198620)6.35e-46Showinfo_outline
41complement(40044..40649)PHAGE_Entero_mEp237_NC_019704: hypothetical protein; NCTC11680_00058; phage(gi435439315)1.25e-118Showinfo_outline
42complement(41028..41261)PHAGE_Entero_mEp237_NC_019704: hypothetical protein; NCTC11680_00059; phage(gi435439313)2.02e-34Showinfo_outline
43complement(41522..41980)PHAGE_Escher_HK639_NC_016158: DNA pol III theta; NCTC11680_00060; phage(gi356870660)1.88e-07Showinfo_outline
44complement(42408..42836)PHAGE_Edward_GF_2_NC_026611: hypothetical protein; NCTC11680_00061; phage(gi764162287)2.99e-06Showinfo_outline
45complement(42840..43061)PHAGE_Salmon_II_E1_NC_010495: hypothetical protein; NCTC11680_00062; phage(gi170676296)1.58e-13Showinfo_outline
46complement(43058..43312)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC11680_00063; phage(gi428782346)5.06e-16Showinfo_outline
47complement(43305..43508)PHAGE_Entero_VT2phi_272_NC_028656: hypothetical protein; NCTC11680_00064; phage(gi966197733)3.06e-35Showinfo_outline
48complement(43505..44290)PHAGE_Burkho_KS9_NC_013055: chromosome partitioning protein gp35; NCTC11680_00065; phage(gi255033718)6.43e-87Showinfo_outline
49complement(44283..44618)PHAGE_Salmon_SPN3UB_NC_019545: putative DNA-binding protein; NCTC11680_00066; phage(gi423262429)2.53e-15Showinfo_outline
50complement(44626..45375)PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA replication protein; NCTC11680_00067; phage(gi169257280)2.73e-159Showinfo_outline
51complement(45378..46286)PHAGE_Shigel_Stx_NC_029120: primosomal protein I; NCTC11680_00068; phage(gi985761262)4.70e-117Showinfo_outline
52complement(46301..46489)ClpX C4-type zinc finger; NCTC11680_000690.0Showinfo_outline
53complement(46577..47113)PHAGE_Entero_mEp237_NC_019704: CII protein; NCTC11680_00070; phage(gi435439306)8.89e-89Showinfo_outline
5447454..47849PHAGE_Entero_mEp237_NC_019704: hypothetical protein; NCTC11680_00071; phage(gi435439303)1.65e-66Showinfo_outline
5548297..49160PHAGE_Entero_phi80_NC_021190: protein 40A (acetate kinase superfamily domain); NCTC11680_00072; phage(gi824479622)5.74e-128Showinfo_outline
56complement(49193..49396)PHAGE_Salmon_118970_sal4_NC_030919: hypothetical protein; NCTC11680_00073; phage(gi100018)1.18e-30Showinfo_outline
5749680..49988PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC11680_00074; phage(gi356870645)5.65e-36Showinfo_outline
5850285..50476secreted protein; NCTC11680_000750.0Showinfo_outline
5950485..50640PHAGE_Entero_mEp237_NC_019704: hypothetical protein; NCTC11680_00076; phage(gi435439297)5.16e-18Showinfo_outline
6050778..53882PHAGE_Entero_mEp237_NC_019704: exonuclease; NCTC11680_00077; phage(gi435439296)0.0Showinfo_outline
6153895..55004PHAGE_Entero_mEp237_NC_019704: recombinase RecT; NCTC11680_00078; phage(gi435439295)0.0Showinfo_outline
62complement(55505..56692)PHAGE_Entero_mEp237_NC_019704: integrase; NCTC11680_00079; phage(gi435439292)2.27e-151Showinfo_outline
6361954..61965attR0.0Showinfo_outline
6470679..70691attR0.0Showinfo_outline

Region 2, total 41 CDS

#CDS PositionBLAST HitE-ValueSequence
1176881..176898attL0.0Showinfo_outline
2complement(178101..179240)PHAGE_Salmon_SEN5_NC_028701: late control D protein; NCTC11680_00206; phage(gi966201585)7.12e-154Showinfo_outline
3179395..180567PHAGE_Salmon_SEN5_NC_028701: tail sheath monomer; NCTC11680_00207; phage(gi966201583)5.26e-158Showinfo_outline
4180567..181082PHAGE_Salmon_SEN5_NC_028701: major tail tube protein; NCTC11680_00208; phage(gi966201582)3.87e-48Showinfo_outline
5181128..181445PHAGE_Salmon_SEN5_NC_028701: tail protein; NCTC11680_00209; phage(gi966201581)8.38e-19Showinfo_outline
6181590..184565PHAGE_Salmon_SEN5_NC_028701: tail length tape-measure protein; NCTC11680_00210; phage(gi966201579)1.78e-75Showinfo_outline
7184580..185047PHAGE_Entero_P88_NC_026014: tail protein; NCTC11680_00211; phage(gi744692744)9.63e-73Showinfo_outline
8complement(186181..187383)PHAGE_Oenoco_phi9805_NC_023559: ABC transporter, ATP-binding protein-related protein; NCTC11680_00212; phage(gi589286210)2.46e-05Showinfo_outline
9complement(187730..188827)PHAGE_Salmon_SEN5_NC_028701: tail fiber protein; NCTC11680_00213; phage(gi966201574)9.81e-11Showinfo_outline
10complement(188827..189039)Uncharacterised protein; NCTC11680_002140.0Showinfo_outline
11complement(189036..190514)PHAGE_Bacill_G_NC_023719: gp353; NCTC11680_00215; phage(gi593777809)3.05e-21Showinfo_outline
12complement(190678..192063)PHAGE_Escher_vB_EcoM_ECO1230_10_NC_027995: putative phage tail protein; NCTC11680_00216; phage(gi937533297)2.29e-30Showinfo_outline
13complement(192053..192976)PHAGE_Entero_P88_NC_026014: baseplate assembly protein J; NCTC11680_00217; phage(gi744692737)1.83e-71Showinfo_outline
14complement(192978..193328)PHAGE_Entero_P88_NC_026014: lysozyme family baseplate assembly protein; NCTC11680_00218; phage(gi744692736)2.71e-38Showinfo_outline
15complement(193325..193912)PHAGE_Salmon_SEN5_NC_028701: baseplate assembly protein V; NCTC11680_00219; phage(gi966201570)1.30e-60Showinfo_outline
16complement(193909..194544)PHAGE_Salmon_SEN5_NC_028701: tail completion protein; NCTC11680_00220; phage(gi966201568)1.54e-61Showinfo_outline
17complement(194541..195008)PHAGE_Salmon_SEN5_NC_028701: tail protein; NCTC11680_00221; phage(gi966201567)5.27e-24Showinfo_outline
18complement(195009..195329)PHAGE_Entero_SfV_NC_003444: putative Rz1 lytic protein; NCTC11680_00222; phage(gi19549039)7.88e-09Showinfo_outline
19complement(195531..196076)PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: endolysin; NCTC11680_00223; phage(gi971749661)1.53e-42Showinfo_outline
20complement(196073..196351)Uncharacterised protein; NCTC11680_002240.0Showinfo_outline
21complement(196348..196548)PHAGE_Salmon_SEN5_NC_028701: tail component protein; NCTC11680_00225; phage(gi966201563)1.39e-20Showinfo_outline
22complement(196548..197063)PHAGE_Salmon_SEN5_NC_028701: head completion-stabilization protein; NCTC11680_00226; phage(gi966201562)2.20e-46Showinfo_outline
23complement(197176..198033)PHAGE_Salmon_SEN5_NC_028701: terminase endonuclease subunit; NCTC11680_00227; phage(gi966201561)2.82e-65Showinfo_outline
24complement(198083..199117)PHAGE_Salmon_SEN5_NC_028701: major capsid protein; NCTC11680_00228; phage(gi966201560)2.27e-125Showinfo_outline
25complement(199127..199966)PHAGE_Salmon_SEN5_NC_028701: capsid scaffolding protein; NCTC11680_00229; phage(gi966201559)7.78e-62Showinfo_outline
26200123..201850PHAGE_Salmon_SEN5_NC_028701: terminase ATPase subunit; NCTC11680_00230; phage(gi966201558)0.0Showinfo_outline
27201844..202905PHAGE_Salmon_SEN5_NC_028701: portal vertex protein; NCTC11680_00231; phage(gi966201557)2.47e-128Showinfo_outline
28203343..205025Uncharacterised protein; NCTC11680_002320.0Showinfo_outline
29complement(205353..207869)PHAGE_Salmon_SEN5_NC_028701: replication protein; NCTC11680_00233; phage(gi966201551)2.79e-87Showinfo_outline
30complement(207907..208842)PHAGE_Salmon_SEN5_NC_028701: methyl-directed repair DNA adenine methylase; NCTC11680_00234; phage(gi966201549)2.94e-104Showinfo_outline
31complement(208839..209066)Uncharacterised protein; NCTC11680_002350.0Showinfo_outline
32complement(209075..209641)PHAGE_Yersin_PY54_NC_005069: exonuclease; NCTC11680_00236; phage(gi33770559)2.89e-21Showinfo_outline
33complement(209638..209862)Uncharacterised protein; NCTC11680_002370.0Showinfo_outline
34complement(209931..210203)Uncharacterised protein; NCTC11680_002380.0Showinfo_outline
35complement(210219..210596)Uncharacterised protein; NCTC11680_002390.0Showinfo_outline
36complement(210612..210830)PHAGE_Salmon_SEN5_NC_028701: hypothetical protein; NCTC11680_00240; phage(gi966201595)3.03e-09Showinfo_outline
37complement(210851..211129)PHAGE_Salmon_SEN5_NC_028701: regulatory protein Cox; NCTC11680_00241; phage(gi966201593)2.58e-25Showinfo_outline
38211250..211549PHAGE_Entero_P2_NC_001895: gpC; NCTC11680_00242; phage(gi9630358)1.36e-38Showinfo_outline
39211665..212648PHAGE_Salmon_SEN5_NC_028701: integrase; NCTC11680_00243; phage(gi966201588)1.31e-118Showinfo_outline
40212764..212781attR0.0Showinfo_outline
41212913..213926PHAGE_Bacill_G_NC_023719: gp350; NCTC11680_00244; phage(gi593777806)5.15e-18Showinfo_outline

Region 3, total 68 CDS

#CDS PositionBLAST HitE-ValueSequence
1956108..956119attL0.0Showinfo_outline
2complement(960135..962123)PHAGE_Staphy_EW_NC_007056: ORF002; NCTC11680_00958; phage(gi66395809)3.63e-11Showinfo_outline
3complement(962149..962334)Uncharacterised protein; NCTC11680_009590.0Showinfo_outline
4complement(962334..963239)PHAGE_Salmon_SEN34_NC_028699: tail fiber protein; NCTC11680_00960; phage(gi966201444)1.25e-22Showinfo_outline
5complement(963239..964015)PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC11680_00961; phage(gi966201443)1.13e-93Showinfo_outline
6complement(964012..965211)PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC11680_00962; phage(gi966201442)0.0Showinfo_outline
7complement(965211..965564)PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC11680_00963; phage(gi966201441)6.84e-59Showinfo_outline
8complement(965566..966219)PHAGE_Salmon_SEN34_NC_028699: baseplate assembly protein; NCTC11680_00964; phage(gi966201439)3.64e-95Showinfo_outline
9complement(966307..967059)PHAGE_Entero_VT2phi_272_NC_028656: antirepressor protein; NCTC11680_00965; phage(gi966197726)8.02e-58Showinfo_outline
10complement(967132..967752)PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; NCTC11680_00966; phage(gi423262398)2.10e-42Showinfo_outline
11complement(967798..967977)PHAGE_Salmon_SEN22_NC_028696: regulatory protein; NCTC11680_00967; phage(gi966201333)3.40e-06Showinfo_outline
12complement(968285..968638)PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC11680_00968; phage(gi966201437)5.17e-38Showinfo_outline
13complement(968641..969705)PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC11680_00969; phage(gi966201436)3.18e-175Showinfo_outline
14complement(969708..970010)PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC11680_00970; phage(gi966201435)1.25e-33Showinfo_outline
15complement(970010..970450)PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC11680_00971; phage(gi966201434)1.62e-50Showinfo_outline
16complement(970633..972591)PHAGE_Salmon_SEN34_NC_028699: tail tape measure protein; NCTC11680_00972; phage(gi966201433)0.0Showinfo_outline
17complement(972581..972733)Uncharacterised protein; NCTC11680_009730.0Showinfo_outline
18complement(972775..973224)PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC11680_00974; phage(gi966201432)1.26e-50Showinfo_outline
19complement(973228..973671)PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC11680_00975; phage(gi966201431)2.49e-84Showinfo_outline
20complement(973682..974827)PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC11680_00976; phage(gi966201430)1.27e-180Showinfo_outline
21complement(974831..975271)PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC11680_00977; phage(gi966201429)1.29e-41Showinfo_outline
22complement(975366..975752)PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC11680_00978; phage(gi966201428)8.98e-59Showinfo_outline
23complement(975752..976366)PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC11680_00979; phage(gi966201427)3.31e-23Showinfo_outline
24complement(976363..976782)PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC11680_00980; phage(gi966201426)3.43e-55Showinfo_outline
25complement(976751..977032)PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC11680_00981; phage(gi966201425)2.45e-09Showinfo_outline
26complement(977072..978013)PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC11680_00982; phage(gi966201424)1.18e-167Showinfo_outline
27complement(978025..978519)PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC11680_00983; phage(gi966201423)1.73e-54Showinfo_outline
28complement(978523..979725)PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC11680_00984; phage(gi966201422)4.49e-139Showinfo_outline
29complement(980381..981832)PHAGE_Salmon_SEN34_NC_028699: putative portal protein; NCTC11680_00985; phage(gi966201420)0.0Showinfo_outline
30complement(981836..983449)PHAGE_Salmon_SEN34_NC_028699: terminase large subunit; NCTC11680_00986; phage(gi966201419)0.0Showinfo_outline
31complement(983452..983925)PHAGE_Pectob_ZF40_NC_019522: hypothetical protein; NCTC11680_00987; phage(gi422936680)2.08e-79Showinfo_outline
32complement(983956..984591)PHAGE_Pectob_ZF40_NC_019522: putative transposase; NCTC11680_00988; phage(gi422936679)3.20e-116Showinfo_outline
33complement(984713..984856)Uncharacterised protein; NCTC11680_009890.0Showinfo_outline
34complement(984914..985381)PHAGE_Entero_ST104_NC_005841: gp15; NCTC11680_00990; phage(gi46358690)4.93e-77Showinfo_outline
35complement(985482..985985)PHAGE_Salmon_vB_SemP_Emek_NC_018275: lysin; NCTC11680_00991; phage(gi399498856)1.07e-96Showinfo_outline
36complement(985988..986302)PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; NCTC11680_00992; phage(gi423262443)5.43e-62Showinfo_outline
37complement(986497..986571)tRNA0.0Showinfo_outline
38complement(986755..987444)PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage antiterminator protein Q; NCTC11680_00995; phage(gi169257244)2.52e-90Showinfo_outline
39complement(987441..987581)PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC11680_00996; phage(gi966201476)4.22e-07Showinfo_outline
40complement(987578..987940)PHAGE_Entero_mEp237_NC_019704: Holliday junction resolvase RusA; NCTC11680_00997; phage(gi435439318)1.91e-69Showinfo_outline
41complement(987937..988227)PHAGE_Entero_mEp237_NC_019704: hypothetical protein; NCTC11680_00998; phage(gi435439317)6.52e-60Showinfo_outline
42complement(988436..989056)PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC11680_00999; phage(gi966201473)6.99e-62Showinfo_outline
43complement(989436..990185)PHAGE_Entero_c_1_NC_019706: EaA protein; NCTC11680_01000; phage(gi428781766)1.10e-20Showinfo_outline
44complement(990182..990349)Uncharacterised protein; NCTC11680_010010.0Showinfo_outline
45complement(990349..990858)PHAGE_Salmon_vB_SemP_Emek_NC_018275: hypothetical protein; NCTC11680_01002; phage(gi399498826)9.39e-06Showinfo_outline
46complement(991243..991692)PHAGE_Vibrio_pYD38_A_NC_021534: hypothetical protein; NCTC11680_01003; phage(gi514051016)9.49e-17Showinfo_outline
47complement(991689..991913)PHAGE_Pectob_ZF40_NC_019522: hypothetical protein; NCTC11680_01004; phage(gi422936659)6.61e-20Showinfo_outline
48complement(991910..992212)PHAGE_Serrat_phiMAM1_NC_020083: putative transcriptional regulator-HTH domain; NCTC11680_01005; phage(gi440789434)3.62e-06Showinfo_outline
49complement(992209..992988)PHAGE_Entero_Tyrion_NC_031077: hypothetical protein; NCTC11680_01006; phage(gi100044)2.07e-124Showinfo_outline
50complement(992985..993821)PHAGE_Salmon_SEN34_NC_028699: replication protein O; NCTC11680_01007; phage(gi966201463)2.37e-47Showinfo_outline
51complement(993898..994152)PHAGE_Vibrio_pYD38_A_NC_021534: hypothetical protein; NCTC11680_01008; phage(gi514050975)8.47e-06Showinfo_outline
52complement(994152..994472)PHAGE_Salmon_SEN34_NC_028699: putative DNA-binding protein; NCTC11680_01009; phage(gi966201462)1.35e-49Showinfo_outline
53complement(994522..994746)PHAGE_Erwini_phiEt88_NC_015295: hypothetical protein; NCTC11680_01010; phage(gi327198607)2.94e-17Showinfo_outline
54994874..995563PHAGE_Escher_HK639_NC_016158: cI; NCTC11680_01011; phage(gi356870650)2.46e-82Showinfo_outline
55996001..996237PHAGE_Pseudo_PAJU2_NC_011373: hypothetical protein; NCTC11680_01012; phage(gi209552454)2.45e-06Showinfo_outline
56996500..997030PHAGE_Salmon_64795_sal3_NC_031918: hypothetical protein; NCTC11680_01013; phage(gi100063)4.93e-44Showinfo_outline
57997018..997113TolA protein; NCTC11680_010140.0Showinfo_outline
58997121..997318Uncharacterised protein; NCTC11680_010150.0Showinfo_outline
59997315..997473PHAGE_Salmon_vB_SosS_Oslo_NC_018279: Arf protein; NCTC11680_01016; phage(gi399528801)1.22e-08Showinfo_outline
60997470..998123PHAGE_Mycoba_Goku_NC_022085: hypothetical protein; NCTC11680_01017; phage(gi530786892)2.45e-21Showinfo_outline
61998107..998397Uncharacterised protein; NCTC11680_010180.0Showinfo_outline
62998394..998699PHAGE_Entero_UAB_Phi20_NC_031019: prohead core protein protease; NCTC11680_01019; phage(gi100061)3.26e-17Showinfo_outline
63998696..999223PHAGE_Entero_933W_NC_000924: putative DNA N-6-adenine-methyltransferase; NCTC11680_01020; phage(gi9632500)6.99e-72Showinfo_outline
64999220..999990PHAGE_Escher_vB_EcoM_ECO1230_10_NC_027995: conserved phage protein; NCTC11680_01021; phage(gi937533322)8.32e-82Showinfo_outline
65999987..1000205PHAGE_Entero_933W_NC_000924: hypothetical protein; NCTC11680_01022; phage(gi9632476)1.57e-15Showinfo_outline
661000207..1000422PHAGE_Stx2_vB_EcoP_24B_NC_027984: putative C4 zinc finger protein; NCTC11680_01023; phage(gi937456240)3.19e-16Showinfo_outline
671000415..1000426attR0.0Showinfo_outline
681000636..1001799PHAGE_Escher_HK639_NC_016158: integrase; NCTC11680_01024; phage(gi356870629)0.0Showinfo_outline

Region 4, total 20 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(1665081..1665548)PROPHAGE_Ralsto_GMI1000: ISRSO12-transposase ORFB protein; NCTC11680_01669; phage(gi17546158)3.76e-68Showinfo_outline
21666270..1666383Uncharacterised protein; NCTC11680_016710.0Showinfo_outline
3complement(1666566..1666688)Uncharacterised protein; NCTC11680_016720.0Showinfo_outline
41666813..1667940Pyocin large subunit; NCTC11680_016730.0Showinfo_outline
51667930..1668193Uncharacterised protein; NCTC11680_016740.0Showinfo_outline
61668332..1668583PROPHAGE_Xantho_33913: ISxac3 transposase; NCTC11680_01675; phage(gi21231087)1.10e-12Showinfo_outline
71668787..1668800attL0.0Showinfo_outline
8complement(1668984..1669679)Uncharacterised protein; NCTC11680_016760.0Showinfo_outline
9complement(1670067..1672409)PHAGE_Entero_P4_NC_001609: DNA primase; NCTC11680_01677; phage(gi9627512)0.0Showinfo_outline
10complement(1672421..1672741)PHAGE_Entero_P4_NC_001609: hypothetical protein; NCTC11680_01678; phage(gi9627513)2.01e-65Showinfo_outline
11complement(1672738..1672965)Uncharacterised protein; NCTC11680_016790.0Showinfo_outline
12complement(1672962..1673156)PHAGE_Entero_P4_NC_001609: putative CI repressor; NCTC11680_01680; phage(gi9627516)5.54e-29Showinfo_outline
13complement(1673516..1673782)PHAGE_Entero_P4_NC_001609: transcriptional regulator; NCTC11680_01683; phage(gi9627517)4.15e-42Showinfo_outline
141674342..1675022PHAGE_Entero_P4_NC_001609: head size determination protein sid; NCTC11680_01684; phage(gi9627518)3.11e-84Showinfo_outline
151675076..1675321PHAGE_Entero_186_NC_001317: B protein; NCTC11680_01685; phage(gi9634083)7.90e-18Showinfo_outline
161675339..1675905PHAGE_Entero_P4_NC_001609: amber mutation-suppressing protein; NCTC11680_01686; phage(gi9627520)6.58e-74Showinfo_outline
171676352..1678508Superfamily I DNA and RNA helicases; NCTC11680_016870.0Showinfo_outline
181678520..1679185Uncharacterized conserved protein (DUF2290); NCTC11680_016880.0Showinfo_outline
19complement(1679235..1680488)PHAGE_Entero_P4_NC_001609: integrase; NCTC11680_01689; phage(gi9627511)0.0Showinfo_outline
201680659..1680672attR0.0Showinfo_outline

Region 5, total 50 CDS

#CDS PositionBLAST HitE-ValueSequence
12941063..2941109attL0.0Showinfo_outline
2complement(2941149..2942234)PHAGE_Salmon_RE_2010_NC_019488: integrase; NCTC11680_02933; phage(gi418489683)2.05e-134Showinfo_outline
3complement(2942234..2942485)Uncharacterised protein; NCTC11680_029340.0Showinfo_outline
4complement(2942488..2943102)PHAGE_Salmon_Fels_2_NC_010463: P2 CI-like protein; NCTC11680_02935; phage(gi169936063)2.18e-46Showinfo_outline
52943203..2943439PHAGE_Haemop_HP2_NC_003315: orf2(S)cox; NCTC11680_02936; phage(gi17981819)1.51e-06Showinfo_outline
62943474..2943983PHAGE_Salmon_RE_2010_NC_019488: regulatory protein; NCTC11680_02937; phage(gi418489686)1.57e-103Showinfo_outline
72943991..2944191PHAGE_Salmon_RE_2010_NC_019488: cell division blocking protein; NCTC11680_02938; phage(gi418489687)2.01e-33Showinfo_outline
82944155..2944496PHAGE_Salmon_RE_2010_NC_019488: hypothetical protein; NCTC11680_02939; phage(gi418489688)1.04e-65Showinfo_outline
92944564..2944797PHAGE_Salmon_RE_2010_NC_019488: hypothetical protein; NCTC11680_02940; phage(gi418489689)3.50e-28Showinfo_outline
102944797..2945024PHAGE_Salmon_RE_2010_NC_019488: zinc-finger containing protein; NCTC11680_02941; phage(gi418489690)2.21e-42Showinfo_outline
112945021..2945908PHAGE_Salmon_RE_2010_NC_019488: DNA adenine methyltransferase; NCTC11680_02942; phage(gi418489691)7.83e-145Showinfo_outline
122945889..2948297PHAGE_Salmon_RE_2010_NC_019488: replication protein; NCTC11680_02943; phage(gi418489692)0.0Showinfo_outline
132948481..2948669PHAGE_Salmon_RE_2010_NC_019488: hypothetical protein; NCTC11680_02944; phage(gi418489693)1.29e-33Showinfo_outline
142948683..2948916PHAGE_Salmon_RE_2010_NC_019488: SOS induction modulator; NCTC11680_02945; phage(gi418489694)3.13e-42Showinfo_outline
152948992..2949249PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; NCTC11680_02946; phage(gi410491513)1.29e-21Showinfo_outline
162949613..2950782Uncharacterised protein; NCTC11680_029470.0Showinfo_outline
17complement(2950820..2951848)PHAGE_Salmon_RE_2010_NC_019488: capsid packaging protein; NCTC11680_02948; phage(gi418489696)0.0Showinfo_outline
18complement(2951848..2953602)PHAGE_Salmon_RE_2010_NC_019488: terminase ATPase subunit; NCTC11680_02949; phage(gi418489697)0.0Showinfo_outline
192953752..2954585PHAGE_Salmon_RE_2010_NC_019488: capsid scaffolding protein; NCTC11680_02950; phage(gi418489698)1.40e-157Showinfo_outline
202954602..2955654PHAGE_Salmon_RE_2010_NC_019488: major capsid protein; NCTC11680_02951; phage(gi418489699)0.0Showinfo_outline
212955658..2956308PHAGE_Salmon_RE_2010_NC_019488: terminase endonuclease subunit; NCTC11680_02952; phage(gi418489700)3.71e-119Showinfo_outline
222956405..2956869PHAGE_Salmon_RE_2010_NC_019488: head completion-stabilization protein; NCTC11680_02953; phage(gi418489701)7.91e-96Showinfo_outline
232956869..2957072PHAGE_Salmon_RE_2010_NC_019488: tail component protein; NCTC11680_02954; phage(gi418489702)5.82e-38Showinfo_outline
242957076..2957291PHAGE_Salmon_RE_2010_NC_019488: lysis protein S; NCTC11680_02955; phage(gi418489703)8.43e-42Showinfo_outline
252957272..2957781PHAGE_Salmon_RE_2010_NC_019488: lysozyme; NCTC11680_02956; phage(gi418489704)2.90e-104Showinfo_outline
262957786..2958169Uncharacterised protein; NCTC11680_029570.0Showinfo_outline
272958166..2958594PHAGE_Salmon_RE_2010_NC_019488: lysozyme subunit B; NCTC11680_02958; phage(gi418489705)7.71e-60Showinfo_outline
282958690..2959121PHAGE_Salmon_RE_2010_NC_019488: tail protein; NCTC11680_02959; phage(gi418489706)2.55e-82Showinfo_outline
292959114..2959560PHAGE_Salmon_RE_2010_NC_019488: tail completion protein; NCTC11680_02960; phage(gi418489707)6.26e-75Showinfo_outline
302959629..2960201PHAGE_Salmon_RE_2010_NC_019488: baseplate assembly protein V; NCTC11680_02961; phage(gi418489709)8.74e-97Showinfo_outline
312960198..2960560PHAGE_Salmon_RE_2010_NC_019488: baseplate wedge subunit; NCTC11680_02962; phage(gi418489710)2.82e-63Showinfo_outline
322960547..2961455PHAGE_Salmon_RE_2010_NC_019488: baseplate assembly protein J; NCTC11680_02963; phage(gi418489711)6.12e-151Showinfo_outline
332961448..2962050PHAGE_Salmon_RE_2010_NC_019488: tail protein I; NCTC11680_02964; phage(gi418489712)4.71e-75Showinfo_outline
342962052..2964166PHAGE_Klebsi_vB_KpnM_KB57_NC_028659: hypothetical protein; NCTC11680_02965; phage(gi966203354)4.54e-18Showinfo_outline
352964170..2964973Uncharacterised protein; NCTC11680_029660.0Showinfo_outline
362964983..2966062PHAGE_Salmon_SEN5_NC_028701: tail fiber protein; NCTC11680_02967; phage(gi966201574)1.02e-43Showinfo_outline
372966201..2967373PHAGE_Salmon_RE_2010_NC_019488: major tail sheath protein; NCTC11680_02968; phage(gi418489720)0.0Showinfo_outline
382967383..2967898PHAGE_Salmon_RE_2010_NC_019488: major tail tube protein; NCTC11680_02969; phage(gi418489721)3.13e-107Showinfo_outline
392967951..2968250PHAGE_Salmon_RE_2010_NC_019488: tail protein E; NCTC11680_02970; phage(gi418489722)3.31e-48Showinfo_outline
402968377..2971004PHAGE_Salmon_RE_2010_NC_019488: tail tape measure protein; NCTC11680_02971; phage(gi418489724)8.99e-93Showinfo_outline
412971001..2971486PHAGE_Salmon_RE_2010_NC_019488: tail protein; NCTC11680_02972; phage(gi418489725)3.26e-95Showinfo_outline
422971483..2972580PHAGE_Salmon_RE_2010_NC_019488: gene D protein; NCTC11680_02973; phage(gi418489726)0.0Showinfo_outline
432972651..2972869PHAGE_Salmon_RE_2010_NC_019488: OGR regulator of late gene transcription; NCTC11680_02974; phage(gi418489727)1.17e-33Showinfo_outline
44complement(2973006..2973081)tRNA0.0Showinfo_outline
452973006..2973052attR0.0Showinfo_outline
462973206..2973712G:T/U mismatch-specific uracil/thymine DNA-glycosylase; NCTC11680_029760.0Showinfo_outline
47complement(2973812..2974792)PHAGE_Synech_S_CBS3_NC_015465: group 2 RNA polymerase sigma factor; NCTC11680_02977; phage(gi331028036)1.03e-38Showinfo_outline
48complement(2974776..2975654)RNA polymerase sigma factor RpoD; NCTC11680_029780.0Showinfo_outline
49complement(2975873..2977618)PHAGE_Helico_phiHP33_NC_016568: DNA primase; NCTC11680_02979; phage(gi371671350)1.20e-51Showinfo_outline
50complement(2977730..2977945)PHAGE_Pelagi_HTVC008M_NC_020484: 30S ribosomal protein S21; NCTC11680_02980; phage(gi460042545)5.26e-05Showinfo_outline

Region 6, total 48 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(3518602..3519843)PROPHAGE_Escher_MG1655: CP4-57 prophage; integrase; NCTC11680_03530; phage(gi16130540)0.0Showinfo_outline
23520045..3520091attL0.0Showinfo_outline
3complement(3520221..3521138)Uncharacterised protein; NCTC11680_035310.0Showinfo_outline
4complement(3521144..3522178)PHAGE_Salmon_RE_2010_NC_019488: integrase; NCTC11680_03532; phage(gi418489683)0.0Showinfo_outline
5complement(3522180..3522812)PHAGE_Salmon_Fels_2_NC_010463: P2 CI-like protein; NCTC11680_03533; phage(gi169936063)9.77e-86Showinfo_outline
63522932..3523174PHAGE_Salmon_RE_2010_NC_019488: excisionase; NCTC11680_03534; phage(gi418489685)6.39e-30Showinfo_outline
73523207..3523716PHAGE_Salmon_RE_2010_NC_019488: regulatory protein; NCTC11680_03535; phage(gi418489686)3.68e-105Showinfo_outline
83523724..3523924PHAGE_Salmon_RE_2010_NC_019488: cell division blocking protein; NCTC11680_03536; phage(gi418489687)2.94e-31Showinfo_outline
93523888..3524229PHAGE_Salmon_RE_2010_NC_019488: hypothetical protein; NCTC11680_03537; phage(gi418489688)1.04e-65Showinfo_outline
103524297..3524530PHAGE_Salmon_RE_2010_NC_019488: hypothetical protein; NCTC11680_03538; phage(gi418489689)2.82e-28Showinfo_outline
113524530..3524757PHAGE_Salmon_RE_2010_NC_019488: zinc-finger containing protein; NCTC11680_03539; phage(gi418489690)3.76e-42Showinfo_outline
123524754..3525641PHAGE_Salmon_RE_2010_NC_019488: DNA adenine methyltransferase; NCTC11680_03540; phage(gi418489691)2.46e-145Showinfo_outline
133525622..3528027PHAGE_Salmon_RE_2010_NC_019488: replication protein; NCTC11680_03541; phage(gi418489692)0.0Showinfo_outline
143528200..3528388PHAGE_Salmon_RE_2010_NC_019488: hypothetical protein; NCTC11680_03542; phage(gi418489693)2.22e-33Showinfo_outline
153528402..3528635PHAGE_Salmon_RE_2010_NC_019488: SOS induction modulator; NCTC11680_03543; phage(gi418489694)4.89e-43Showinfo_outline
163528711..3528968PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; NCTC11680_03544; phage(gi410491513)1.21e-21Showinfo_outline
173529332..3530501Uncharacterised protein; NCTC11680_035450.0Showinfo_outline
18complement(3530539..3531567)PHAGE_Salmon_RE_2010_NC_019488: capsid packaging protein; NCTC11680_03546; phage(gi418489696)0.0Showinfo_outline
19complement(3531567..3533321)PHAGE_Salmon_RE_2010_NC_019488: terminase ATPase subunit; NCTC11680_03547; phage(gi418489697)0.0Showinfo_outline
203533471..3534304PHAGE_Salmon_RE_2010_NC_019488: capsid scaffolding protein; NCTC11680_03548; phage(gi418489698)4.25e-154Showinfo_outline
213534321..3535385PHAGE_Salmon_RE_2010_NC_019488: major capsid protein; NCTC11680_03549; phage(gi418489699)0.0Showinfo_outline
223535389..3536039PHAGE_Salmon_RE_2010_NC_019488: terminase endonuclease subunit; NCTC11680_03550; phage(gi418489700)7.05e-120Showinfo_outline
233536136..3536600PHAGE_Salmon_RE_2010_NC_019488: head completion-stabilization protein; NCTC11680_03551; phage(gi418489701)1.63e-95Showinfo_outline
243536600..3536803PHAGE_Salmon_RE_2010_NC_019488: tail component protein; NCTC11680_03552; phage(gi418489702)1.62e-38Showinfo_outline
253536807..3537022PHAGE_Salmon_RE_2010_NC_019488: lysis protein S; NCTC11680_03553; phage(gi418489703)8.43e-42Showinfo_outline
263537003..3537512PHAGE_Salmon_RE_2010_NC_019488: lysozyme; NCTC11680_03554; phage(gi418489704)1.21e-103Showinfo_outline
273537517..3537900Uncharacterised protein; NCTC11680_035550.0Showinfo_outline
283537897..3538325PHAGE_Salmon_RE_2010_NC_019488: lysozyme subunit B; NCTC11680_03556; phage(gi418489705)1.65e-59Showinfo_outline
293538421..3538852PHAGE_Salmon_RE_2010_NC_019488: tail protein; NCTC11680_03557; phage(gi418489706)8.34e-80Showinfo_outline
30complement(3539291..3540040)Uncharacterised protein; NCTC11680_035580.0Showinfo_outline
313540158..3540706PHAGE_Salmon_RE_2010_NC_019488: baseplate assembly protein V; NCTC11680_03559; phage(gi418489709)1.74e-91Showinfo_outline
323540703..3541062PHAGE_Salmon_RE_2010_NC_019488: baseplate wedge subunit; NCTC11680_03560; phage(gi418489710)4.47e-65Showinfo_outline
333541049..3541957PHAGE_Salmon_RE_2010_NC_019488: baseplate assembly protein J; NCTC11680_03561; phage(gi418489711)6.12e-151Showinfo_outline
343541950..3542552PHAGE_Salmon_RE_2010_NC_019488: tail protein I; NCTC11680_03562; phage(gi418489712)4.71e-75Showinfo_outline
353542554..3544668PHAGE_Klebsi_vB_KpnM_KB57_NC_028659: hypothetical protein; NCTC11680_03563; phage(gi966203354)4.71e-18Showinfo_outline
363544672..3545475Uncharacterised protein; NCTC11680_035640.0Showinfo_outline
373545485..3546558PHAGE_Salmon_SEN5_NC_028701: tail fiber protein; NCTC11680_03565; phage(gi966201574)8.84e-44Showinfo_outline
383546706..3547878PHAGE_Salmon_RE_2010_NC_019488: major tail sheath protein; NCTC11680_03566; phage(gi418489720)0.0Showinfo_outline
393547888..3548403PHAGE_Salmon_RE_2010_NC_019488: major tail tube protein; NCTC11680_03567; phage(gi418489721)3.13e-107Showinfo_outline
403548456..3548755PHAGE_Salmon_RE_2010_NC_019488: tail protein E; NCTC11680_03568; phage(gi418489722)3.31e-48Showinfo_outline
413548882..3551509PHAGE_Salmon_RE_2010_NC_019488: tail tape measure protein; NCTC11680_03569; phage(gi418489724)4.40e-89Showinfo_outline
423551506..3551991PHAGE_Salmon_RE_2010_NC_019488: tail protein; NCTC11680_03570; phage(gi418489725)1.00e-94Showinfo_outline
433551988..3553085PHAGE_Salmon_RE_2010_NC_019488: gene D protein; NCTC11680_03571; phage(gi418489726)0.0Showinfo_outline
443553152..3553370PHAGE_Salmon_RE_2010_NC_019488: OGR regulator of late gene transcription; NCTC11680_03572; phage(gi418489727)6.04e-34Showinfo_outline
45complement(3553429..3553800)PHAGE_Burkho_KS14_NC_015273: gp9; NCTC11680_03573; phage(gi327198278)1.76e-07Showinfo_outline
463553895..3553941attR0.0Showinfo_outline
47complement(3553897..3554259)tRNA0.0Showinfo_outline
48complement(3554404..3554886)PHAGE_Staphy_StauST398_5_NC_023500: SsrA-binding protein; NCTC11680_03575; phage(gi588498309)5.87e-39Showinfo_outline

Region 7, total 50 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(4237936..4238679)PHAGE_Staphy_SPbeta_like_NC_029119: tRNA (cmo5U34)-methyltransferase; NCTC11680_04192; phage(gi985761180)1.30e-37Showinfo_outline
2complement(4238719..4239114)inner membrane protein; NCTC11680_041930.0Showinfo_outline
3complement(4239167..4239940)Protein of uncharacterised function DUF72; NCTC11680_041940.0Showinfo_outline
44239758..4239769attL0.0Showinfo_outline
5complement(4239943..4241202)PHAGE_Entero_phiP27_NC_003356: putative integrase; NCTC11680_04195; phage(gi18249865)0.0Showinfo_outline
6complement(4241245..4241490)PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage excisionase; NCTC11680_04196; phage(gi169257269)1.19e-35Showinfo_outline
7complement(4241512..4241646)Uncharacterised protein; NCTC11680_041970.0Showinfo_outline
8complement(4241746..4241868)PHAGE_Stx2_vB_EcoP_24B_NC_027984: putative C4 zinc finger protein; NCTC11680_04198; phage(gi937456240)1.05e-05Showinfo_outline
9complement(4241865..4242092)PHAGE_Salmon_II_E1_NC_010495: hypothetical protein; NCTC11680_04199; phage(gi170676296)2.75e-11Showinfo_outline
10complement(4242159..4242314)PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC11680_04200; phage(gi356870658)5.88e-18Showinfo_outline
11complement(4242311..4242913)PHAGE_Salmon_64795_sal3_NC_031918: hypothetical protein; NCTC11680_04201; phage(gi100063)1.81e-40Showinfo_outline
12complement(4242910..4244088)PHAGE_Salmon_epsilon15_NC_004775: cytosine methylase; NCTC11680_04202; phage(gi30387420)0.0Showinfo_outline
13complement(4244085..4245209)PHAGE_Salmon_9NA_NC_025443: putative DNA methylase; NCTC11680_04203; phage(gi712914017)2.30e-106Showinfo_outline
14complement(4245206..4245364)PHAGE_Entero_933W_NC_000924: hypothetical protein; NCTC11680_04204; phage(gi9632478)2.10e-15Showinfo_outline
15complement(4245361..4245984)PHAGE_Cellul_phi10:1_NC_021802: exonuclease, YqaJ (recombinase); NCTC11680_04205; phage(gi526178112)4.77e-58Showinfo_outline
16complement(4245981..4246484)PHAGE_Cellul_phi10:1_NC_021802: hypothetical protein; NCTC11680_04206; phage(gi526178111)1.45e-08Showinfo_outline
17complement(4246481..4246714)PHAGE_Acinet_AP22_NC_017984: hypothetical protein; NCTC11680_04207; phage(gi388570838)5.62e-17Showinfo_outline
18complement(4246726..4247010)PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC11680_04208; phage(gi356870640)2.23e-52Showinfo_outline
19complement(4247290..4247400)Uncharacterised protein; NCTC11680_042090.0Showinfo_outline
20complement(4247397..4247525)PHAGE_Pseudo_PAJU2_NC_011373: hypothetical protein; NCTC11680_04210; phage(gi209552454)4.68e-07Showinfo_outline
21complement(4247963..4248652)PHAGE_Escher_HK639_NC_016158: cI; NCTC11680_04211; phage(gi356870650)2.46e-82Showinfo_outline
224248780..4249013PHAGE_Escher_HK639_NC_016158: cro; NCTC11680_04212; phage(gi356870651)5.15e-19Showinfo_outline
234249053..4249373PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage transcriptional activator; Lambda gpCII analog; NCTC11680_04213; phage(gi169257278)1.35e-49Showinfo_outline
244249373..4249627PHAGE_Vibrio_pYD38_A_NC_021534: hypothetical protein; NCTC11680_04214; phage(gi514050975)8.47e-06Showinfo_outline
254249704..4250540PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA replication protein; Lambda gpo homolog; NCTC11680_04215; phage(gi169257279)1.27e-47Showinfo_outline
264250537..4251316PHAGE_Entero_Tyrion_NC_031077: hypothetical protein; NCTC11680_04216; phage(gi100044)2.07e-124Showinfo_outline
274251313..4251615PHAGE_Serrat_phiMAM1_NC_020083: putative transcriptional regulator-HTH domain; NCTC11680_04217; phage(gi440789434)3.62e-06Showinfo_outline
284251612..4251836PHAGE_Pectob_ZF40_NC_019522: hypothetical protein; NCTC11680_04218; phage(gi422936659)6.61e-20Showinfo_outline
294251833..4252282PHAGE_Vibrio_pYD38_A_NC_021534: hypothetical protein; NCTC11680_04219; phage(gi514051016)9.49e-17Showinfo_outline
304252667..4253176PHAGE_Salmon_vB_SemP_Emek_NC_018275: hypothetical protein; NCTC11680_04220; phage(gi399498826)9.39e-06Showinfo_outline
314253176..4253343Uncharacterised protein; NCTC11680_042210.0Showinfo_outline
324253340..4254089PHAGE_Entero_c_1_NC_019706: EaA protein; NCTC11680_04222; phage(gi428781766)1.10e-20Showinfo_outline
334254469..4255089PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; NCTC11680_04223; phage(gi169257286)3.77e-62Showinfo_outline
344255089..4255262PHAGE_Escher_HK639_NC_016158: NinE; NCTC11680_04224; phage(gi356870663)1.02e-15Showinfo_outline
354255259..4255927PHAGE_Entero_HK225_NC_019717: NinI protein; NCTC11680_04225; phage(gi428782438)8.28e-138Showinfo_outline
364255920..4256558PHAGE_Phage_Gifsy_2_NC_010393: NinG; NCTC11680_04226; phage(gi169257288)2.72e-43Showinfo_outline
374256555..4256779PHAGE_Salmon_ST160_NC_014900: NinY; NCTC11680_04227; phage(gi318065939)9.09e-32Showinfo_outline
384256776..4256916PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; NCTC11680_04228; phage(gi169257289)5.46e-07Showinfo_outline
394256913..4257602PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage antiterminator protein Q; NCTC11680_04229; phage(gi169257244)3.83e-92Showinfo_outline
404257795..4257869tRNA0.0Showinfo_outline
414258154..4258423PHAGE_Entero_HK225_NC_019717: holin; NCTC11680_04231; phage(gi428782443)1.58e-35Showinfo_outline
424258395..4258898PHAGE_Salmon_vB_SemP_Emek_NC_018275: lysin; NCTC11680_04232; phage(gi399498856)6.76e-104Showinfo_outline
434259103..4259435PHAGE_Entero_SfV_NC_003444: putative Rz1 lytic protein; NCTC11680_04233; phage(gi19549039)9.74e-47Showinfo_outline
444259623..4259787Uncharacterised protein; NCTC11680_042340.0Showinfo_outline
454259846..4260889PHAGE_Burkho_BcepMigl_NC_019917: terminase small subunit; NCTC11680_04235; phage(gi431809885)6.01e-31Showinfo_outline
464260893..4262224PHAGE_Salmon_SSU5_NC_018843: putative terminase large subunit; NCTC11680_04236; phage(gi410491412)1.71e-19Showinfo_outline
474262236..4263651Protein of uncharacterised function (DUF1073); NCTC11680_042370.0Showinfo_outline
484263648..4264469Uncharacterised protein; NCTC11680_042380.0Showinfo_outline
494264482..4266095PHAGE_Burkho_BcepB1A_NC_005886: gp26; NCTC11680_04239; phage(gi48697515)1.51e-14Showinfo_outline
504279357..4279368attR0.0Showinfo_outline

Region 8, total 75 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(5383314..5383985)PHAGE_Pseudo_F116_NC_006552: hypothetical protein; NCTC11680_05360; phage(gi56692976)2.32e-52Showinfo_outline
2complement(5384175..5384291)peptide transport system permease protein sapB; NCTC11680_053610.0Showinfo_outline
3complement(5384291..5384608)peptide transport system permease protein sapB; NCTC11680_053620.0Showinfo_outline
4complement(5384590..5385003)peptide transport system permease protein sapB; NCTC11680_053630.0Showinfo_outline
5complement(5385008..5385769)antimicrobial peptide ABC transporter substrate-binding protein SapA; NCTC11680_053640.0Showinfo_outline
65385824..5386159PHAGE_Klebsi_phiKO2_NC_005857: Gp21; NCTC11680_05365; phage(gi46402107)5.03e-38Showinfo_outline
75386462..5387004PHAGE_Klebsi_phiKO2_NC_005857: Gp21; NCTC11680_05366; phage(gi46402107)1.43e-39Showinfo_outline
85386964..5387755PHAGE_Klebsi_phiKO2_NC_005857: Gp21; NCTC11680_05367; phage(gi46402107)1.49e-48Showinfo_outline
95387822..5389072PHAGE_Klebsi_phiKO2_NC_005857: Gp21; NCTC11680_05368; phage(gi46402107)3.17e-64Showinfo_outline
105389076..5389384PHAGE_Klebsi_Sushi_NC_028774: hypothetical protein; NCTC11680_05369; phage(gi971742190)7.64e-36Showinfo_outline
115391178..5391588PHAGE_Entero_CAjan_NC_028776: tail fiber protein; NCTC11680_05370; phage(gi971742359)1.94e-21Showinfo_outline
12complement(5392043..5392492)PHAGE_Klebsi_phiKO2_NC_005857: Gp24; NCTC11680_05371; phage(gi46402110)6.69e-94Showinfo_outline
13complement(5392929..5393096)PHAGE_Klebsi_phiKO2_NC_005857: plasmid partition protein SopA; NCTC11680_05372; phage(gi46402111)7.85e-28Showinfo_outline
14complement(5393469..5393612)Uncharacterised protein; NCTC11680_053730.0Showinfo_outline
155394829..5394972PHAGE_Klebsi_phiKO2_NC_005857: plasmid partition protein SopA; NCTC11680_05374; phage(gi46402111)5.32e-08Showinfo_outline
165395240..5395731PHAGE_Klebsi_phiKO2_NC_005857: plasmid partition protein SopA; NCTC11680_05375; phage(gi46402111)3.65e-109Showinfo_outline
175396138..5396971PHAGE_Klebsi_phiKO2_NC_005857: Gp24; NCTC11680_05376; phage(gi46402110)0.0Showinfo_outline
18complement(5397045..5397470)PHAGE_Klebsi_Sushi_NC_028774: tail fiber; NCTC11680_05377; phage(gi971742192)3.00e-29Showinfo_outline
19complement(5398049..5398192)Uncharacterised protein; NCTC11680_053780.0Showinfo_outline
20complement(5398607..5399254)PHAGE_Klebsi_Sushi_NC_028774: hypothetical protein; NCTC11680_05379; phage(gi971742191)9.11e-92Showinfo_outline
21complement(5399257..5399565)PHAGE_Klebsi_Sushi_NC_028774: hypothetical protein; NCTC11680_05380; phage(gi971742190)7.64e-36Showinfo_outline
22complement(5399569..5411727)PHAGE_Klebsi_phiKO2_NC_005857: Gp21; NCTC11680_05381; phage(gi46402107)0.0Showinfo_outline
23complement(5411790..5412383)PHAGE_Klebsi_phiKO2_NC_005857: Gp20; NCTC11680_05382; phage(gi46402106)1.04e-112Showinfo_outline
24complement(5412400..5413227)PHAGE_Pseudo_YMC11/02/R656_NC_028657: hypothetical protein; NCTC11680_05383; phage(gi966197843)7.49e-11Showinfo_outline
25complement(5413274..5413984)PHAGE_Klebsi_phiKO2_NC_005857: Gp18; NCTC11680_05384; phage(gi46402104)2.10e-162Showinfo_outline
26complement(5413986..5414741)PHAGE_Klebsi_phiKO2_NC_005857: Gp17; NCTC11680_05385; phage(gi46402103)1.84e-156Showinfo_outline
27complement(5414738..5415076)PHAGE_Klebsi_phiKO2_NC_005857: Gp16; NCTC11680_05386; phage(gi46402102)1.68e-72Showinfo_outline
28complement(5415076..5418432)PHAGE_Klebsi_phiKO2_NC_005857: putative tapemeasure protein; NCTC11680_05387; phage(gi46402101)0.0Showinfo_outline
29complement(5418665..5419030)PHAGE_Klebsi_phiKO2_NC_005857: putative tail assembly chaperone; NCTC11680_05388; phage(gi46402099)8.81e-73Showinfo_outline
30complement(5419088..5419549)PHAGE_Klebsi_phiKO2_NC_005857: major tail shaft subunit; NCTC11680_05389; phage(gi46402098)3.90e-88Showinfo_outline
31complement(5419581..5419982)PHAGE_Klebsi_phiKO2_NC_005857: Gp11; NCTC11680_05390; phage(gi46402097)1.15e-87Showinfo_outline
32complement(5419979..5420368)PHAGE_Klebsi_phiKO2_NC_005857: Gp10; NCTC11680_05391; phage(gi46402096)5.13e-78Showinfo_outline
33complement(5420349..5420687)PHAGE_Klebsi_phiKO2_NC_005857: Gp9; NCTC11680_05392; phage(gi46402095)9.00e-72Showinfo_outline
34complement(5420684..5421001)PHAGE_Klebsi_phiKO2_NC_005857: Gp8; NCTC11680_05393; phage(gi46402094)8.49e-62Showinfo_outline
35complement(5420982..5421269)PHAGE_Klebsi_phiKO2_NC_005857: Gp7; NCTC11680_05394; phage(gi46402093)5.28e-29Showinfo_outline
36complement(5421329..5422615)PHAGE_Klebsi_phiKO2_NC_005857: major capsid head protein precursor; NCTC11680_05395; phage(gi46402092)0.0Showinfo_outline
37complement(5422693..5423613)PHAGE_Klebsi_phiKO2_NC_005857: putative head maturation protease; NCTC11680_05396; phage(gi46402091)0.0Showinfo_outline
38complement(5423650..5424909)PHAGE_Klebsi_phiKO2_NC_005857: putative portal protein; NCTC11680_05397; phage(gi46402090)0.0Showinfo_outline
39complement(5425082..5426791)PHAGE_Klebsi_phiKO2_NC_005857: putative large terminase subunit; NCTC11680_05398; phage(gi46402088)0.0Showinfo_outline
40complement(5426826..5427248)PHAGE_Klebsi_phiKO2_NC_005857: putative small terminase subunit; NCTC11680_05399; phage(gi46402087)8.82e-97Showinfo_outline
41complement(5427677..5428105)PHAGE_Klebsi_phiKO2_NC_005857: Gp62; NCTC11680_05400; phage(gi46402148)3.44e-52Showinfo_outline
42complement(5428787..5429425)PHAGE_Klebsi_phiKO2_NC_005857: Gp59; NCTC11680_05401; phage(gi46402145)9.45e-58Showinfo_outline
43complement(5429694..5429993)PHAGE_Klebsi_phiKO2_NC_005857: Gp58; NCTC11680_05402; phage(gi46402144)7.87e-69Showinfo_outline
44complement(5430002..5430220)PHAGE_Klebsi_phiKO2_NC_005857: Gp57; NCTC11680_05403; phage(gi46402143)2.61e-16Showinfo_outline
45complement(5430247..5430723)PHAGE_Klebsi_phiKO2_NC_005857: Gp55; NCTC11680_05404; phage(gi46402141)1.20e-86Showinfo_outline
46complement(5430740..5431231)PHAGE_Klebsi_phiKO2_NC_005857: Gp54; NCTC11680_05405; phage(gi46402140)8.89e-109Showinfo_outline
47complement(5431228..5431539)PHAGE_Klebsi_phiKO2_NC_005857: Gp53; NCTC11680_05406; phage(gi46402139)6.25e-59Showinfo_outline
48complement(5431598..5432659)PHAGE_Klebsi_phiKO2_NC_005857: putative DNA adenine methylase; NCTC11680_05407; phage(gi46402138)0.0Showinfo_outline
49complement(5432977..5433207)PHAGE_Klebsi_phiKO2_NC_005857: Gp51; NCTC11680_05408; phage(gi46402137)4.13e-41Showinfo_outline
50complement(5433216..5433437)PHAGE_Klebsi_phiKO2_NC_005857: Gp50; NCTC11680_05409; phage(gi46402136)4.18e-38Showinfo_outline
515433608..5433916PHAGE_Klebsi_phiKO2_NC_005857: Gp49; NCTC11680_05410; phage(gi46402135)2.48e-63Showinfo_outline
525433916..5434203PHAGE_Klebsi_phiKO2_NC_005857: Gp48; NCTC11680_05411; phage(gi46402134)1.50e-61Showinfo_outline
53complement(5434248..5434451)PHAGE_Klebsi_phiKO2_NC_005857: Gp47; NCTC11680_05412; phage(gi46402133)4.57e-29Showinfo_outline
54complement(5434555..5434782)PHAGE_Klebsi_phiKO2_NC_005857: Gp46; NCTC11680_05413; phage(gi46402132)1.91e-34Showinfo_outline
55complement(5434803..5435027)PHAGE_Klebsi_phiKO2_NC_005857: Gp45; NCTC11680_05414; phage(gi46402131)3.81e-45Showinfo_outline
56complement(5435122..5435367)PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC11680_05415; phage(gi356870658)2.62e-36Showinfo_outline
57complement(5435364..5435840)PHAGE_Klebsi_phiKO2_NC_005857: Gp41; NCTC11680_05416; phage(gi46402127)9.27e-23Showinfo_outline
58complement(5435837..5435971)PHAGE_Klebsi_phiKO2_NC_005857: Gp40; NCTC11680_05417; phage(gi46402126)9.89e-17Showinfo_outline
59complement(5435968..5436576)PHAGE_Klebsi_phiKO2_NC_005857: Gp39; NCTC11680_05418; phage(gi46402125)1.99e-130Showinfo_outline
60complement(5436988..5437725)PHAGE_Klebsi_phiKO2_NC_005857: lambda Q-like transcription antiterminator; NCTC11680_05419; phage(gi46402124)2.83e-157Showinfo_outline
615438005..5438613PHAGE_Klebsi_phiKO2_NC_005857: Gp36; NCTC11680_05420; phage(gi46402122)1.00e-138Showinfo_outline
625438864..5442868PHAGE_Klebsi_phiKO2_NC_005857: Gp35; NCTC11680_05421; phage(gi46402121)0.0Showinfo_outline
635442861..5443067Uncharacterised protein; NCTC11680_054220.0Showinfo_outline
645443054..5443380PHAGE_Entero_N15_NC_001901: gp35; NCTC11680_05423; phage(gi9630505)6.62e-54Showinfo_outline
655443383..5443715PHAGE_Entero_N15_NC_001901: gp34; NCTC11680_05424; phage(gi9630504)1.04e-62Showinfo_outline
665443815..5444339Uncharacterised protein; NCTC11680_054250.0Showinfo_outline
67complement(5444366..5445499)Colicin-A; NCTC11680_054260.0Showinfo_outline
685446028..5446192PHAGE_Klebsi_phiKO2_NC_005857: Gp29; NCTC11680_05429; phage(gi46402115)3.97e-29Showinfo_outline
695446189..5446419PHAGE_Klebsi_phiKO2_NC_005857: Gp28; NCTC11680_05430; phage(gi46402114)5.05e-42Showinfo_outline
705446416..5447195PHAGE_Klebsi_phiKO2_NC_005857: Gp27; NCTC11680_05431; phage(gi46402113)7.01e-152Showinfo_outline
71complement(5447250..5449154)PHAGE_Klebsi_phiKO2_NC_005857: protelomerase; NCTC11680_05432; phage(gi46402112)0.0Showinfo_outline
725449535..5451439PHAGE_Klebsi_phiKO2_NC_005857: protelomerase; NCTC11680_05433; phage(gi46402112)0.0Showinfo_outline
73complement(5451494..5452273)PHAGE_Klebsi_phiKO2_NC_005857: Gp27; NCTC11680_05434; phage(gi46402113)7.01e-152Showinfo_outline
74complement(5452270..5452500)PHAGE_Klebsi_phiKO2_NC_005857: Gp28; NCTC11680_05435; phage(gi46402114)5.05e-42Showinfo_outline
75complement(5452497..5452661)PHAGE_Klebsi_phiKO2_NC_005857: Gp29; NCTC11680_05436; phage(gi46402115)3.97e-29Showinfo_outline
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Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 5459316 bps
Phages: 8
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download