Submission Results

Sequence Name: Not Available

GenBank Accession Number: UGMF00000000.1

GenInfo (GI) Number: 0000000000

Download Results: UGMF00000000.1.PHASTER.zip

gi|00000000|ref|UGMF00000000.1| Klebsiella pneumoniae strain NCTC11688, whole genome shotgun 5760785, gc%: 57.00%

Download summary as .txt file: summary.txt file_download

Total: 4 prophage regions have been identified, of which 4 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
158.2Kbintact14062341778-400025 info_outlinePHAGE_Entero_mEp237_NC_019704(12)51.35%Show info_outline
243.7Kbintact150444464195-4507972 info_outlinePHAGE_Entero_mEp235_NC_019708(10)49.70%Show info_outline
356.5Kbintact150525609579-5666086 info_outlinePHAGE_Entero_mEp235_NC_019708(8)50.43%Show info_outline
419.5Kbintact150305728461-5748013 info_outlinePHAGE_Entero_HK544_NC_019767(6)53.54%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|UGMF00000000.1| Klebsiella pneumoniae strain NCTC11688, whole genome shotgun 5760785, gc%: 57.00%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 64 CDS

#CDS PositionBLAST HitE-ValueSequence
1341778..341790attL0.0Showinfo_outline
2complement(347315..349066)PHAGE_Staphy_EW_NC_007056: ORF002; NCTC11688_00386; phage(gi66395809)1.54e-09Showinfo_outline
3complement(349143..352211)PHAGE_Pseudo_PS_1_NC_029066: tail protein; NCTC11688_00387; phage(gi985757719)1.23e-75Showinfo_outline
4complement(352208..352588)PHAGE_Pseudo_phi297_NC_016762: hypothetical protein; NCTC11688_00388; phage(gi374531303)3.26e-22Showinfo_outline
5complement(352598..353080)PHAGE_Pseudo_D3_NC_002484: hypothetical protein; NCTC11688_00389; phage(gi9635614)2.00e-36Showinfo_outline
6complement(353067..353540)PHAGE_Pseudo_PAJU2_NC_011373: hypothetical protein; NCTC11688_00390; phage(gi209552438)9.29e-47Showinfo_outline
7complement(353540..355933)PHAGE_Pseudo_PMG1_NC_016765: tail tape measure protein; NCTC11688_00391; phage(gi374531664)9.16e-63Showinfo_outline
8complement(356310..356813)type VI secretion-associated protein, VC_A0118 family; NCTC11688_003920.0Showinfo_outline
9complement(356810..357745)PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_030909: hypothetical protein; NCTC11688_00393; phage(gi100072)6.15e-12Showinfo_outline
10complement(357828..358358)PHAGE_Salmon_SE1_NC_011802: hypothetical protein; NCTC11688_00394; phage(gi219681238)7.75e-79Showinfo_outline
11complement(358532..358699)Uncharacterised protein; NCTC11688_003950.0Showinfo_outline
12complement(358867..359349)PHAGE_Pseudo_phiPSA1_NC_024365: hypothetical protein; NCTC11688_00396; phage(gi658307708)2.03e-11Showinfo_outline
13complement(359403..360575)PHAGE_Vibrio_VpKK5_NC_026610: tail subunit; NCTC11688_00397; phage(gi764162154)6.63e-13Showinfo_outline
14complement(360599..360991)PHAGE_Idioma_Phi1M2_2_NC_025471: putative tail minor protein; NCTC11688_00398; phage(gi722142256)2.31e-06Showinfo_outline
15complement(360988..361539)PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC11688_00399; phage(gi356870610)1.37e-36Showinfo_outline
16complement(361541..361924)PHAGE_Pseudo_YMC11/02/R656_NC_028657: hypothetical protein; NCTC11688_00400; phage(gi966197873)2.68e-28Showinfo_outline
17complement(361911..362144)Uncharacterised protein; NCTC11688_004010.0Showinfo_outline
18complement(362154..362408)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; NCTC11688_00402; phage(gi410491538)9.80e-29Showinfo_outline
19complement(362410..362805)PHAGE_Pseudo_YMC11/02/R656_NC_028657: hypothetical protein; NCTC11688_00403; phage(gi966197874)1.65e-18Showinfo_outline
20complement(363127..364080)PHAGE_Vibrio_pYD38_B_NC_021561: major capsid protein; NCTC11688_00404; phage(gi514231589)6.45e-148Showinfo_outline
21complement(364091..364876)PHAGE_Xantho_Xp15_NC_007024: putative phage structural protein; NCTC11688_00405; phage(gi66392059)2.10e-19Showinfo_outline
22complement(364961..366073)PHAGE_Pseudo_PS_1_NC_029066: head morphogenesis protein; NCTC11688_00406; phage(gi985757697)1.27e-111Showinfo_outline
23complement(366057..367457)PHAGE_Paraco_vB_PmaS_IMEP1_NC_026608: portal protein; NCTC11688_00407; phage(gi764162030)3.14e-81Showinfo_outline
24complement(367457..368764)PHAGE_Acinet_vB_AbaS_TRS1_NC_031098: hypothetical protein; NCTC11688_00408; phage(gi100002)0.0Showinfo_outline
25complement(368742..369746)PHAGE_Burkho_BcepMigl_NC_019917: terminase small subunit; NCTC11688_00409; phage(gi431809885)3.14e-56Showinfo_outline
26complement(370295..370477)Uncharacterised protein; NCTC11688_004100.0Showinfo_outline
27complement(370609..370854)PHAGE_Entero_ST104_NC_005841: hypothetical protein; NCTC11688_00411; phage(gi46358693)1.54e-10Showinfo_outline
28complement(371668..371868)PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC11688_00412; phage(gi356870671)1.50e-19Showinfo_outline
29complement(371813..372088)PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC11688_00413; phage(gi428782715)5.07e-35Showinfo_outline
30complement(372085..372429)PHAGE_Pseudo_vB_Pae_Kakheti25_NC_017864: holin; NCTC11688_00414; phage(gi388542661)1.19e-09Showinfo_outline
31complement(372426..372965)PHAGE_Erwini_vB_EamP_S6_NC_019514: endolysin; NCTC11688_00415; phage(gi422935930)1.28e-81Showinfo_outline
32complement(372962..373138)PHAGE_Serrat_Eta_NC_021563: holin; NCTC11688_00416; phage(gi514361091)7.34e-22Showinfo_outline
33complement(373913..374602)PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage antiterminator protein Q; NCTC11688_00419; phage(gi169257244)2.42e-89Showinfo_outline
34complement(374599..374739)PHAGE_Entero_mEp237_NC_019704: hypothetical protein; NCTC11688_00420; phage(gi435439319)2.46e-06Showinfo_outline
35complement(374736..375098)PHAGE_Entero_mEp237_NC_019704: Holliday junction resolvase RusA; NCTC11688_00421; phage(gi435439318)1.91e-69Showinfo_outline
36complement(375095..375385)PHAGE_Entero_mEp237_NC_019704: hypothetical protein; NCTC11688_00422; phage(gi435439317)6.52e-60Showinfo_outline
37complement(375594..376190)PHAGE_Entero_mEp237_NC_019704: hypothetical protein; NCTC11688_00423; phage(gi435439315)8.01e-119Showinfo_outline
38complement(376604..376837)PHAGE_Entero_mEp237_NC_019704: hypothetical protein; NCTC11688_00424; phage(gi435439313)2.02e-34Showinfo_outline
39377169..378281PHAGE_Yersin_L_413C_NC_004745: hypothetical protein; NCTC11688_00425; phage(gi30065744)1.10e-25Showinfo_outline
40378285..379304Uncharacterised protein; NCTC11688_004260.0Showinfo_outline
41complement(379306..380313)PHAGE_Synech_S_WAM1_NC_031944: hypothetical protein; NCTC11688_00427; phage(gi100141)2.88e-16Showinfo_outline
42complement(380790..381551)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; NCTC11688_00428; phage(gi100093)2.62e-29Showinfo_outline
43complement(381555..381776)PHAGE_Salmon_II_E1_NC_010495: hypothetical protein; NCTC11688_00429; phage(gi170676296)1.72e-12Showinfo_outline
44complement(381773..382027)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC11688_00430; phage(gi428782346)5.06e-16Showinfo_outline
45complement(382020..382223)PHAGE_Entero_VT2phi_272_NC_028656: hypothetical protein; NCTC11688_00431; phage(gi966197733)3.06e-35Showinfo_outline
46complement(382220..383005)PHAGE_Burkho_KS9_NC_013055: chromosome partitioning protein gp35; NCTC11688_00432; phage(gi255033718)1.66e-84Showinfo_outline
47complement(382998..383333)PHAGE_Salmon_SPN3UB_NC_019545: putative DNA-binding protein; NCTC11688_00433; phage(gi423262429)1.16e-16Showinfo_outline
48complement(383326..384069)PHAGE_Salmon_SEN34_NC_028699: replication protein P; NCTC11688_00434; phage(gi966201464)2.80e-105Showinfo_outline
49complement(384066..384932)PHAGE_Entero_mEp237_NC_019704: DNA replication protein O; NCTC11688_00435; phage(gi435439307)3.85e-117Showinfo_outline
50complement(385070..385330)PHAGE_Vibrio_pYD38_A_NC_021534: hypothetical protein; NCTC11688_00436; phage(gi514050975)3.28e-05Showinfo_outline
51complement(385341..385877)PHAGE_Entero_mEp237_NC_019704: CII protein; NCTC11688_00437; phage(gi435439306)1.74e-73Showinfo_outline
52complement(385880..386110)PHAGE_Entero_mEp237_NC_019704: prophage anti-repressor; NCTC11688_00438; phage(gi435439305)6.81e-13Showinfo_outline
53386812..387120PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC11688_00439; phage(gi356870645)9.93e-37Showinfo_outline
54387418..387609secreted protein; NCTC11688_004400.0Showinfo_outline
55387618..387773PHAGE_Entero_mEp237_NC_019704: hypothetical protein; NCTC11688_00441; phage(gi435439297)1.80e-18Showinfo_outline
56387911..391006PHAGE_Entero_mEp237_NC_019704: exonuclease; NCTC11688_00442; phage(gi435439296)0.0Showinfo_outline
57391019..392107PHAGE_Entero_mEp237_NC_019704: recombinase RecT; NCTC11688_00443; phage(gi435439295)1.69e-121Showinfo_outline
58392166..392807PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; NCTC11688_00444; phage(gi100097)1.40e-77Showinfo_outline
59392804..393112PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; NCTC11688_00445; phage(gi401817569)7.62e-34Showinfo_outline
60complement(393580..394767)PHAGE_Entero_mEp237_NC_019704: integrase; NCTC11688_00446; phage(gi435439292)1.71e-151Showinfo_outline
61394944..395834peptide transport system permease protein sapC; NCTC11688_004470.0Showinfo_outline
62395834..396826PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; NCTC11688_00448; phage(gi371496158)1.75e-09Showinfo_outline
63396828..397637PHAGE_Bacill_G_NC_023719: gp245; NCTC11688_00449; phage(gi593777701)1.90e-19Showinfo_outline
64400025..400037attR0.0Showinfo_outline

Region 2, total 49 CDS

#CDS PositionBLAST HitE-ValueSequence
14464195..4464659PHAGE_Bacill_vB_BanS_Tsamsa_NC_023007: hypothetical protein; NCTC11688_04549; phage(gi564292625)3.23e-07Showinfo_outline
24464607..4466028excinuclease ABC subunit C; NCTC11688_045500.0Showinfo_outline
34466086..4466634CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; NCTC11688_045510.0Showinfo_outline
44466785..4466860tRNA0.0Showinfo_outline
54466901..4466974tRNA0.0Showinfo_outline
64466988..4467074tRNA0.0Showinfo_outline
74467018..4467047attL0.0Showinfo_outline
8complement(4467168..4468202)PHAGE_Entero_mEp390_NC_019721: integrase; NCTC11688_04555; phage(gi428782691)5.91e-160Showinfo_outline
9complement(4468734..4469012)PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; NCTC11688_04556; phage(gi423262430)4.20e-10Showinfo_outline
10complement(4469005..4470081)PHAGE_Salmon_SPN1S_NC_016761: putative bacteriophage protein; NCTC11688_04557; phage(gi374531224)2.00e-179Showinfo_outline
11complement(4470081..4470866)PHAGE_Burkho_phi6442_NC_009235: gp57; NCTC11688_04558; phage(gi134288621)3.76e-83Showinfo_outline
12complement(4470866..4471165)PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC11688_04559; phage(gi428782699)1.73e-18Showinfo_outline
13complement(4471511..4472167)PHAGE_Entero_mEp235_NC_019708: prophage repressor; NCTC11688_04560; phage(gi428781850)2.82e-57Showinfo_outline
144472267..4472464PHAGE_Entero_mEp235_NC_019708: prophage antirepressor; NCTC11688_04561; phage(gi428781851)5.32e-11Showinfo_outline
154472499..4472951PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC11688_04562; phage(gi428782704)6.98e-93Showinfo_outline
164473358..4474272PHAGE_Erwini_PEp14_NC_016767: putative phage O family protein; NCTC11688_04563; phage(gi374531901)4.41e-40Showinfo_outline
174474269..4475078PHAGE_Salmon_118970_sal3_NC_031940: prohead core protein protease; NCTC11688_04564; phage(gi100061)1.05e-141Showinfo_outline
184475088..4475465PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; NCTC11688_04565; phage(gi100062)4.39e-65Showinfo_outline
194475478..4476458PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC11688_04566; phage(gi428782365)9.71e-169Showinfo_outline
204476477..4476842PHAGE_Entero_cdtI_NC_009514: antitermination protein Q; NCTC11688_04567; phage(gi148609434)3.21e-66Showinfo_outline
21complement(4476839..4477474)Uncharacterised protein; NCTC11688_045680.0Showinfo_outline
22complement(4477900..4478997)Uncharacterised protein; NCTC11688_045690.0Showinfo_outline
234479922..4480233PHAGE_Salmon_ST64T_NC_004348: holin protein; NCTC11688_04571; phage(gi24371577)7.45e-48Showinfo_outline
244480230..4480769PHAGE_Erwini_vB_EamP_S6_NC_019514: endolysin; NCTC11688_04572; phage(gi422935930)7.85e-82Showinfo_outline
254480766..4481113PHAGE_Pseudo_vB_Pae_Kakheti25_NC_017864: holin; NCTC11688_04573; phage(gi388542661)1.88e-09Showinfo_outline
264481110..4481385PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC11688_04574; phage(gi428782715)6.92e-40Showinfo_outline
274481646..4481834PHAGE_Acinet_Bphi_B1251_NC_019541: hypothetical protein; NCTC11688_04575; phage(gi423262005)1.65e-27Showinfo_outline
28complement(4482033..4482485)Uncharacterised protein; NCTC11688_045760.0Showinfo_outline
294483041..4483535PHAGE_Salmon_ST64B_NC_004313: terminase small subunit; NCTC11688_04577; phage(gi23505446)1.52e-105Showinfo_outline
304483532..4485262PHAGE_Shigel_SfIV_NC_022749: large terminase subunit; NCTC11688_04578; phage(gi557307528)0.0Showinfo_outline
314485410..4486636PHAGE_Entero_SfV_NC_003444: portal protein; NCTC11688_04579; phage(gi19548993)0.0Showinfo_outline
324486629..4487228PHAGE_Entero_SfV_NC_003444: capsid protease; NCTC11688_04580; phage(gi19548994)1.57e-119Showinfo_outline
334487238..4488476PHAGE_Entero_SfV_NC_003444: capsid; NCTC11688_04581; phage(gi19548995)0.0Showinfo_outline
344488554..4488871PHAGE_Shigel_SfII_NC_021857: head-tail connector protein; NCTC11688_04582; phage(gi526244642)2.18e-26Showinfo_outline
354488941..4489138PHAGE_Entero_mEp235_NC_019708: hypothetical protein; NCTC11688_04583; phage(gi428781818)1.01e-30Showinfo_outline
364489140..4489472PHAGE_Entero_mEp235_NC_019708: hypothetical protein; NCTC11688_04584; phage(gi428781819)1.31e-68Showinfo_outline
374489465..4490004PHAGE_Entero_mEp235_NC_019708: hypothetical protein; NCTC11688_04585; phage(gi428781820)7.52e-104Showinfo_outline
384490001..4490366PHAGE_Entero_mEp235_NC_019708: hypothetical protein; NCTC11688_04586; phage(gi428781821)9.63e-64Showinfo_outline
394490423..4490914PHAGE_Entero_mEp235_NC_019708: major tail subunit; NCTC11688_04587; phage(gi428781822)4.80e-80Showinfo_outline
404490958..4491311PHAGE_Entero_mEp235_NC_019708: tail assembly chaperone; NCTC11688_04588; phage(gi428781823)2.62e-47Showinfo_outline
414491344..4491607PHAGE_Entero_mEp235_NC_019708: hypothetical protein; NCTC11688_04589; phage(gi428781824)4.81e-11Showinfo_outline
424492185..4493501PHAGE_Entero_mEp235_NC_019708: tail length tape measure protein; NCTC11688_04590; phage(gi428781825)1.06e-133Showinfo_outline
434493755..4494633PHAGE_Pseudo_PMG1_NC_016765: tail tape measure protein; NCTC11688_04591; phage(gi374531664)3.75e-31Showinfo_outline
444494633..4495112PHAGE_Pseudo_PAJU2_NC_011373: hypothetical protein; NCTC11688_04592; phage(gi209552438)1.40e-44Showinfo_outline
454495099..4495581PHAGE_Pseudo_D3_NC_002484: hypothetical protein; NCTC11688_04593; phage(gi9635614)6.35e-38Showinfo_outline
464495591..4495971PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_030909: hypothetical protein; NCTC11688_04594; phage(gi100020)4.07e-22Showinfo_outline
474495968..4498976PHAGE_Pseudo_PS_1_NC_029066: tail protein; NCTC11688_04595; phage(gi985757719)2.38e-68Showinfo_outline
484499256..4499840PHAGE_Klebsi_PKP126_NC_031053: hypothetical protein; NCTC11688_04596; phage(gi100059)1.97e-12Showinfo_outline
494507972..4508001attR0.0Showinfo_outline

Region 3, total 54 CDS

#CDS PositionBLAST HitE-ValueSequence
15609579..5609591attL0.0Showinfo_outline
2complement(5617200..5619146)PHAGE_Klebsi_PKP126_NC_031053: hypothetical protein; NCTC11688_05732; phage(gi100059)5.00e-11Showinfo_outline
3complement(5619221..5622298)PHAGE_Pseudo_PS_1_NC_029066: tail protein; NCTC11688_05733; phage(gi985757719)3.74e-76Showinfo_outline
4complement(5622295..5622675)PHAGE_Pseudo_phi297_NC_016762: hypothetical protein; NCTC11688_05734; phage(gi374531303)1.57e-22Showinfo_outline
5complement(5622688..5623164)PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; NCTC11688_05735; phage(gi985757717)8.99e-37Showinfo_outline
6complement(5623151..5623624)PHAGE_Pseudo_PAJU2_NC_011373: hypothetical protein; NCTC11688_05736; phage(gi209552438)5.63e-46Showinfo_outline
7complement(5623918..5624406)PHAGE_Escher_HK75_NC_016160: tail length tape measure protein; NCTC11688_05737; phage(gi356870691)9.13e-22Showinfo_outline
8complement(5624406..5627027)PHAGE_Entero_BP_4795_NC_004813: putative tail component; NCTC11688_05738; phage(gi157166052)0.0Showinfo_outline
9complement(5627088..5627321)PHAGE_Escher_HK75_NC_016160: hypothetical protein; NCTC11688_05739; phage(gi356870695)3.87e-15Showinfo_outline
10complement(5627395..5627700)PHAGE_Entero_HK106_NC_019768: tail protein; NCTC11688_05740; phage(gi428783291)4.58e-38Showinfo_outline
11complement(5627703..5628068)PHAGE_Escher_HK75_NC_016160: tail assembly chaperone; NCTC11688_05741; phage(gi356870688)5.62e-42Showinfo_outline
12complement(5628138..5628842)PHAGE_Escher_HK75_NC_016160: major tail protein; NCTC11688_05742; phage(gi356870687)1.41e-110Showinfo_outline
13complement(5628899..5629246)PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC11688_05743; phage(gi428782673)2.48e-43Showinfo_outline
14complement(5629243..5629692)PHAGE_Escher_HK75_NC_016160: hypothetical protein; NCTC11688_05744; phage(gi356870685)4.32e-87Showinfo_outline
15complement(5629689..5630027)PHAGE_Escher_HK75_NC_016160: head-tail adaptor protein; NCTC11688_05745; phage(gi356870684)2.99e-49Showinfo_outline
16complement(5630039..5630365)PHAGE_Entero_mEp235_NC_019708: head-tail connector II; NCTC11688_05746; phage(gi428781817)1.75e-55Showinfo_outline
17complement(5630365..5630589)PHAGE_Entero_mEp235_NC_019708: head-tail connector I; NCTC11688_05747; phage(gi428781816)7.20e-19Showinfo_outline
18complement(5630632..5631849)PHAGE_Entero_mEp235_NC_019708: major head subunit; NCTC11688_05748; phage(gi428781815)0.0Showinfo_outline
19complement(5631859..5632707)PHAGE_Entero_mEp235_NC_019708: head maturation protease; NCTC11688_05749; phage(gi428781814)6.75e-174Showinfo_outline
20complement(5632721..5634028)PHAGE_Entero_mEp235_NC_019708: portal protein; NCTC11688_05750; phage(gi428781813)0.0Showinfo_outline
21complement(5634028..5635770)PHAGE_Azospi_Cd_NC_010355: putative terminase; NCTC11688_05751; phage(gi168495132)5.34e-90Showinfo_outline
22complement(5635724..5636188)PHAGE_Entero_mEp235_NC_019708: terminase small subunit; NCTC11688_05752; phage(gi428781811)4.66e-31Showinfo_outline
23complement(5636371..5636712)PHAGE_Escher_HK75_NC_016160: hypothetical protein; NCTC11688_05753; phage(gi356870734)1.37e-59Showinfo_outline
24complement(5636768..5637013)PHAGE_Entero_ST104_NC_005841: hypothetical protein; NCTC11688_05754; phage(gi46358693)6.77e-11Showinfo_outline
25complement(5637411..5637611)PHAGE_Escher_vB_EcoS_FFH1_NC_024139: hypothetical protein; NCTC11688_05755; phage(gi640884327)2.06e-23Showinfo_outline
265637738..5637989Uncharacterised protein; NCTC11688_057560.0Showinfo_outline
27complement(5637922..5638194)Uncharacterised protein; NCTC11688_057570.0Showinfo_outline
285638327..5638611Uncharacterised protein; NCTC11688_057580.0Showinfo_outline
29complement(5638556..5638705)Uncharacterised protein; NCTC11688_057590.0Showinfo_outline
30complement(5638702..5638902)PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC11688_05760; phage(gi428782716)1.37e-17Showinfo_outline
31complement(5638847..5639122)PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC11688_05761; phage(gi428782715)8.37e-37Showinfo_outline
32complement(5639119..5639466)PHAGE_Pseudo_vB_Pae_Kakheti25_NC_017864: holin; NCTC11688_05762; phage(gi388542661)1.66e-09Showinfo_outline
33complement(5639463..5640002)PHAGE_Erwini_vB_EamP_S6_NC_019514: endolysin; NCTC11688_05763; phage(gi422935930)4.18e-82Showinfo_outline
34complement(5639999..5640310)PHAGE_Salmon_ST64T_NC_004348: holin protein; NCTC11688_05764; phage(gi24371577)1.54e-51Showinfo_outline
35complement(5640584..5640829)Uncharacterised protein; NCTC11688_057650.0Showinfo_outline
36complement(5641025..5641840)PHAGE_Salmon_Fels_1_NC_010391: bacteriophage antitermination protein Q; NCTC11688_05766; phage(gi169257178)1.03e-144Showinfo_outline
37complement(5641837..5642154)Uncharacterised protein; NCTC11688_057670.0Showinfo_outline
38complement(5642157..5644028)PHAGE_Entero_c_1_NC_019706: hypothetical protein; NCTC11688_05768; phage(gi428781787)0.0Showinfo_outline
39complement(5644132..5645049)PHAGE_Entero_phiP27_NC_003356: hypothetical protein; NCTC11688_05769; phage(gi18249881)8.30e-61Showinfo_outline
405645662..5646369PHAGE_Escher_HK75_NC_016160: cI repressor; NCTC11688_05770; phage(gi356870714)5.32e-68Showinfo_outline
415646528..5646836PHAGE_Salmon_Fels_1_NC_010391: hypothetical protein; NCTC11688_05771; phage(gi169257170)1.63e-33Showinfo_outline
425646823..5647020PHAGE_Salmon_Fels_1_NC_010391: hypothetical protein; NCTC11688_05772; phage(gi169257169)6.59e-15Showinfo_outline
435647192..5647416Uncharacterised protein; NCTC11688_057730.0Showinfo_outline
445647417..5647782PHAGE_Cronob_ENT39118_NC_019934: hypothetical protein; NCTC11688_05774; phage(gi431811077)4.59e-41Showinfo_outline
455647775..5648029PHAGE_Salmon_Fels_1_NC_010391: hypothetical protein; NCTC11688_05775; phage(gi169257165)2.28e-35Showinfo_outline
465648217..5648642PHAGE_Salmon_Fels_1_NC_010391: hypothetical protein; NCTC11688_05776; phage(gi169257164)2.03e-51Showinfo_outline
475648639..5648833Uncharacterised protein; NCTC11688_057770.0Showinfo_outline
485648830..5649657PHAGE_Entero_phiP27_NC_003356: putative serine protease; NCTC11688_05778; phage(gi18249869)1.59e-167Showinfo_outline
495649702..5650280PHAGE_Entero_phiP27_NC_003356: hypothetical protein; NCTC11688_05779; phage(gi18249870)5.05e-54Showinfo_outline
505650293..5650391Uncharacterised protein; NCTC11688_057800.0Showinfo_outline
515650402..5650593PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC11688_05781; phage(gi966201450)8.22e-30Showinfo_outline
52complement(5650574..5650975)PHAGE_Salmon_SEN34_NC_028699: integrase; NCTC11688_05782; phage(gi966201449)3.33e-77Showinfo_outline
53complement(5650998..5651600)PHAGE_Salmon_SEN34_NC_028699: integrase; NCTC11688_05783; phage(gi966201449)2.79e-119Showinfo_outline
545666086..5666098attR0.0Showinfo_outline

Region 4, total 30 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(5728461..5728865)PHAGE_Klebsi_PKP126_NC_031053: hypothetical protein; NCTC11688_05869; phage(gi100059)4.39e-14Showinfo_outline
2complement(5728862..5729005)flagellar biosynthesis, cell-distal portion of basal-body rod; NCTC11688_058700.0Showinfo_outline
3complement(5729080..5729451)PHAGE_Pseudo_PMG1_NC_016765: putative tail protein; NCTC11688_05871; phage(gi374531670)3.59e-12Showinfo_outline
4complement(5729491..5730156)PHAGE_Pseudo_PS_1_NC_029066: tail protein; NCTC11688_05872; phage(gi985757719)9.23e-28Showinfo_outline
5complement(5730311..5730664)PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_030909: hypothetical protein; NCTC11688_05873; phage(gi100019)2.66e-10Showinfo_outline
6complement(5730828..5731202)kinase; NCTC11688_058740.0Showinfo_outline
7complement(5731208..5731759)PHAGE_Pseudo_PMG1_NC_016765: putative tail protein; NCTC11688_05875; phage(gi374531670)9.89e-13Showinfo_outline
8complement(5732187..5732399)PHAGE_Pseudo_PMG1_NC_016765: hypothetical protein; NCTC11688_05876; phage(gi374531669)5.71e-05Showinfo_outline
9complement(5732609..5733031)PHAGE_Pseudo_D3_NC_002484: hypothetical protein; NCTC11688_05877; phage(gi9635614)3.59e-23Showinfo_outline
10complement(5733018..5733251)PHAGE_Pseudo_PMG1_NC_016765: hypothetical protein; NCTC11688_05878; phage(gi374531665)7.38e-17Showinfo_outline
115733285..5733509PHAGE_Entero_mEp235_NC_019708: head-tail connector I; NCTC11688_05879; phage(gi428781816)7.20e-19Showinfo_outline
125733509..5733835PHAGE_Entero_mEp235_NC_019708: head-tail connector II; NCTC11688_05880; phage(gi428781817)2.14e-54Showinfo_outline
135733847..5734185PHAGE_Entero_HK544_NC_019767: head-tail connector II; NCTC11688_05881; phage(gi428783222)2.99e-49Showinfo_outline
145734182..5734631PHAGE_Entero_HK544_NC_019767: hypothetical protein; NCTC11688_05882; phage(gi428783223)4.32e-87Showinfo_outline
155735031..5735240PHAGE_Entero_HK544_NC_019767: major tail subunit; NCTC11688_05883; phage(gi428783225)2.44e-20Showinfo_outline
165735242..5735733PHAGE_Entero_HK544_NC_019767: major tail subunit; NCTC11688_05884; phage(gi428783225)2.33e-72Showinfo_outline
175735803..5736150PHAGE_Escher_HK75_NC_016160: tail assembly chaperone; NCTC11688_05885; phage(gi356870688)2.22e-38Showinfo_outline
185736169..5736474PHAGE_Entero_HK544_NC_019767: tail protein; NCTC11688_05886; phage(gi428783227)6.31e-38Showinfo_outline
195736548..5736781PHAGE_Entero_HK544_NC_019767: hypothetical protein; NCTC11688_05887; phage(gi428783233)3.87e-15Showinfo_outline
205736842..5737012PHAGE_Cronob_ENT39118_NC_019934: phage tail tape measure protein; NCTC11688_05888; phage(gi431811045)1.10e-14Showinfo_outline
215737259..5737684PHAGE_Stx2_c_1717_NC_011357: tail tape measure protein; NCTC11688_05889; phage(gi209447190)3.17e-46Showinfo_outline
225738066..5738392PHAGE_Entero_HK544_NC_019767: tail length tape measure protein; NCTC11688_05890; phage(gi428783229)2.99e-37Showinfo_outline
235739179..5739640PHAGE_Pseudo_PMG1_NC_016765: tail tape measure protein; NCTC11688_05891; phage(gi374531664)6.32e-27Showinfo_outline
245740247..5740720PHAGE_Pseudo_PAJU2_NC_011373: hypothetical protein; NCTC11688_05892; phage(gi209552438)5.63e-46Showinfo_outline
255740707..5741183PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; NCTC11688_05893; phage(gi985757717)8.99e-37Showinfo_outline
265741196..5741576PHAGE_Pseudo_phi297_NC_016762: hypothetical protein; NCTC11688_05894; phage(gi374531303)1.57e-22Showinfo_outline
275741573..5744650PHAGE_Pseudo_PS_1_NC_029066: tail protein; NCTC11688_05895; phage(gi985757719)3.74e-76Showinfo_outline
285744726..5745670PHAGE_Klebsi_vB_KpnM_KB57_NC_028659: hypothetical protein; NCTC11688_05896; phage(gi966203354)1.79e-08Showinfo_outline
29complement(5745709..5746689)PHAGE_Bacill_BMBtpLA_NC_028748: IS5 transposase and trans-activator; NCTC11688_05897; phage(gi971482498)0.0Showinfo_outline
305746715..5748013PHAGE_Burkho_KS10_NC_011216: hypothetical protein; NCTC11688_05898; phage(gi198449310)3.99e-73Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 5760785 bps
Phages: 4
arrow_upwardarrow_upwardarrow_upward
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Viewer Options
Click on a sequence to see details.
Viewer Options
Click on a sequence to see details.
Viewer Options
Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download