Submission Results

Sequence Name: Not Available

GenBank Accession Number: UGMI00000000.1

GenInfo (GI) Number: 0000000000

Download Results: UGMI00000000.1.PHASTER.zip

gi|00000000|ref|UGMI00000000.1| Klebsiella pneumoniae strain NCTC11358, whole genome shotgun 5449135, gc%: 57.37%

Download summary as .txt file: summary.txt file_download

Total: 5 prophage regions have been identified, of which 3 regions are intact, 2 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
114.8Kbincomplete4018340-15155 info_outlinePHAGE_Pseudo_PMG1_NC_016765(4)53.06%Show info_outline
235.7Kbintact150461695798-1731579 info_outlinePHAGE_Entero_fiAA91_ss_NC_022750(25)53.42%Show info_outline
347.4Kbintact150652847041-2894468 info_outlinePHAGE_Salmon_SPN3UB_NC_019545(11)51.99%Show info_outline
435.6Kbintact150483384538-3420142 info_outlinePHAGE_Haemop_SuMu_NC_019455(16)53.10%Show info_outline
523.8Kbincomplete20315377657-5401525 info_outlinePHAGE_Entero_P1_NC_005856(4)54.16%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|UGMI00000000.1| Klebsiella pneumoniae strain NCTC11358, whole genome shotgun 5449135, gc%: 57.37%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 18 CDS

#CDS PositionBLAST HitE-ValueSequence
1340..750PHAGE_Salmon_ST64B_NC_004313: hypothetical protein; NCTC11358_00001; phage(gi23505498)2.20e-59Showinfo_outline
21349..1888Uncharacterised protein; NCTC11358_000020.0Showinfo_outline
32565..3281PHAGE_Pseudo_PMG1_NC_016765: tail tape measure protein; NCTC11358_00003; phage(gi374531664)1.39e-49Showinfo_outline
43854..5113PHAGE_Idioma_Phi1M2_2_NC_025471: putative tail tape measure protein; NCTC11358_00004; phage(gi722142267)8.76e-20Showinfo_outline
55113..5577PHAGE_Pseudo_PAJU2_NC_011373: hypothetical protein; NCTC11358_00005; phage(gi209552438)8.26e-47Showinfo_outline
65758..6240PHAGE_Pseudo_phi297_NC_016762: hypothetical protein; NCTC11358_00006; phage(gi374531302)7.65e-33Showinfo_outline
76250..6630PHAGE_Pseudo_phi297_NC_016762: hypothetical protein; NCTC11358_00007; phage(gi374531303)1.34e-22Showinfo_outline
86627..7601PHAGE_Pseudo_phi297_NC_016762: hypothetical protein; NCTC11358_00008; phage(gi374531304)3.87e-34Showinfo_outline
97570..8433PHAGE_Pseudo_phi297_NC_016762: hypothetical protein; NCTC11358_00009; phage(gi374531304)3.17e-12Showinfo_outline
108555..9697PHAGE_Pseudo_phi297_NC_016762: hypothetical protein; NCTC11358_00010; phage(gi374531304)1.84e-45Showinfo_outline
119774..10544PHAGE_Klebsi_PKP126_NC_031053: hypothetical protein; NCTC11358_00011; phage(gi100059)5.51e-11Showinfo_outline
1210514..11332PHAGE_Staphy_EW_NC_007056: ORF002; NCTC11358_00012; phage(gi66395809)6.90e-06Showinfo_outline
1311552..11857Uncharacterised protein; NCTC11358_000130.0Showinfo_outline
14complement(12339..12788)Uncharacterised protein; NCTC11358_000140.0Showinfo_outline
15complement(12742..13062)Uncharacterised protein; NCTC11358_000150.0Showinfo_outline
16complement(13059..13151)Uncharacterised protein; NCTC11358_000160.0Showinfo_outline
17complement(13151..13789)PHAGE_Salmon_epsilon15_NC_004775: tail fiber; NCTC11358_00017; phage(gi30387399)3.76e-42Showinfo_outline
18complement(13743..15155)PHAGE_Klebsi_vB_KpnM_KB57_NC_028659: hypothetical protein; NCTC11358_00018; phage(gi966203354)3.64e-08Showinfo_outline

Region 2, total 48 CDS

#CDS PositionBLAST HitE-ValueSequence
11695798..1696661PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; NCTC11358_01696; phage(gi371496158)6.90e-13Showinfo_outline
21696672..1697445PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; NCTC11358_01697; phage(gi371496158)5.71e-33Showinfo_outline
3complement(1697686..1698582)transcription regulator; NCTC11358_016980.0Showinfo_outline
41698652..1698676attL0.0Showinfo_outline
5complement(1698761..1699774)PHAGE_Entero_fiAA91_ss_NC_022750: integrase; NCTC11358_01699; phage(gi557307610)1.91e-112Showinfo_outline
61700583..1700756PHAGE_Entero_WPhi_NC_005056: gp78; NCTC11358_01700; phage(gi33438930)2.89e-18Showinfo_outline
71700753..1701253PHAGE_Entero_fiAA91_ss_NC_022750: DNA replication protein; NCTC11358_01701; phage(gi557307614)3.91e-107Showinfo_outline
81701318..1701533PHAGE_Entero_fiAA91_ss_NC_022750: hypothetical protein; NCTC11358_01702; phage(gi557307617)6.77e-15Showinfo_outline
91701550..1701825PHAGE_Entero_fiAA91_ss_NC_022750: replication initiation protein; NCTC11358_01703; phage(gi557307618)5.57e-36Showinfo_outline
101701815..1704103PHAGE_Entero_fiAA91_ss_NC_022750: DNA replication; NCTC11358_01704; phage(gi557307619)0.0Showinfo_outline
11complement(1704485..1705060)PHAGE_Salmon_SP_004_NC_021774: hypothetical protein; NCTC11358_01705; phage(gi526003651)2.10e-113Showinfo_outline
12complement(1705658..1706143)PHAGE_Salmon_SP_004_NC_021774: hypothetical protein; NCTC11358_01706; phage(gi526003652)4.58e-95Showinfo_outline
13complement(1706795..1707763)PHAGE_Entero_fiAA91_ss_NC_022750: capsid portal protein; NCTC11358_01707; phage(gi557307585)0.0Showinfo_outline
14complement(1707741..1707845)phage-related capsid packaging protein; NCTC11358_017080.0Showinfo_outline
15complement(1707845..1708642)PHAGE_Entero_fiAA91_ss_NC_022750: large terminase subunit; NCTC11358_01709; phage(gi557307593)1.95e-178Showinfo_outline
16complement(1708677..1709615)PHAGE_Entero_186_NC_001317: terminase subunit; NCTC11358_01710; phage(gi9634058)0.0Showinfo_outline
171709781..1710131PHAGE_Entero_fiAA91_ss_NC_022750: capsid scaffold; NCTC11358_01711; phage(gi557307586)6.93e-61Showinfo_outline
181710167..1710637PHAGE_Escher_pro483_NC_028943: capsid scaffolding protein; NCTC11358_01712; phage(gi971758515)4.30e-62Showinfo_outline
191710711..1710908PHAGE_Entero_fiAA91_ss_NC_022750: major capsid protein precursor; NCTC11358_01713; phage(gi557307587)1.11e-30Showinfo_outline
201711066..1711770PHAGE_Salmon_SEN1_NC_029003: major capsid protein; NCTC11358_01714; phage(gi971764914)6.12e-141Showinfo_outline
211711774..1712517PHAGE_Entero_fiAA91_ss_NC_022750: small terminase subunit; NCTC11358_01715; phage(gi557307590)3.16e-127Showinfo_outline
221712614..1713120PHAGE_Entero_fiAA91_ss_NC_022750: capsid completion protein; NCTC11358_01716; phage(gi557307591)5.32e-97Showinfo_outline
231713120..1713323PHAGE_Entero_fiAA91_ss_NC_022750: tail protein; NCTC11358_01717; phage(gi557307592)3.08e-34Showinfo_outline
241713328..1713618PHAGE_Salmon_SEN1_NC_029003: holin; NCTC11358_01718; phage(gi971764918)3.68e-48Showinfo_outline
251713605..1714102PHAGE_Entero_fiAA91_ss_NC_022750: lysozyme; NCTC11358_01719; phage(gi557307624)5.97e-103Showinfo_outline
261714099..1714530PHAGE_Entero_fiAA91_ss_NC_022750: lysin; NCTC11358_01720; phage(gi557307623)1.13e-54Showinfo_outline
271714626..1715093PHAGE_Entero_fiAA91_ss_NC_022750: tail completion protein; NCTC11358_01721; phage(gi557307596)2.69e-85Showinfo_outline
281715086..1715535PHAGE_Salmon_SEN1_NC_029003: tail completion protein; NCTC11358_01722; phage(gi971764923)1.82e-59Showinfo_outline
291715733..1716284Uncharacterised protein; NCTC11358_017230.0Showinfo_outline
301716296..1717057Uncharacterised protein; NCTC11358_017240.0Showinfo_outline
311717381..1717821PHAGE_Entero_fiAA91_ss_NC_022750: baseplate protein; NCTC11358_01725; phage(gi557307597)5.93e-66Showinfo_outline
321717811..1718119PHAGE_Entero_fiAA91_ss_NC_022750: baseplate protein; NCTC11358_01726; phage(gi557307597)2.03e-51Showinfo_outline
331718116..1718463PHAGE_Entero_fiAA91_ss_NC_022750: putative baseplate protein; NCTC11358_01727; phage(gi557307598)3.51e-62Showinfo_outline
341718468..1719376PHAGE_Entero_fiAA91_ss_NC_022750: baseplate assembly; NCTC11358_01728; phage(gi557307588)6.68e-151Showinfo_outline
351719369..1719971PHAGE_Entero_fiAA91_ss_NC_022750: baseplate assembly; NCTC11358_01729; phage(gi557307599)1.45e-60Showinfo_outline
361719973..1721988PHAGE_Klebsi_vB_KpnM_KB57_NC_028659: hypothetical protein; NCTC11358_01730; phage(gi966203353)5.20e-141Showinfo_outline
371722014..1722859PHAGE_Klebsi_vB_KpnM_KB57_NC_028659: hypothetical protein; NCTC11358_01731; phage(gi966203353)2.06e-130Showinfo_outline
381722867..1723703PHAGE_Klebsi_vB_KpnM_KB57_NC_028659: hypothetical protein; NCTC11358_01732; phage(gi966203352)2.80e-135Showinfo_outline
391723719..1724786PHAGE_Salmon_SEN5_NC_028701: tail fiber protein; NCTC11358_01733; phage(gi966201574)9.14e-37Showinfo_outline
401724896..1726077PHAGE_Entero_fiAA91_ss_NC_022750: major tail sheath; NCTC11358_01734; phage(gi557307603)0.0Showinfo_outline
411726091..1726606PHAGE_Entero_fiAA91_ss_NC_022750: major tail tube; NCTC11358_01735; phage(gi557307604)6.16e-91Showinfo_outline
421726741..1726941PHAGE_Entero_fiAA91_ss_NC_022750: tail protein; NCTC11358_01736; phage(gi557307605)1.31e-28Showinfo_outline
431727086..1727478PHAGE_Entero_fiAA91_ss_NC_022750: tail length determinator; NCTC11358_01737; phage(gi557307606)1.60e-50Showinfo_outline
441727767..1729524PHAGE_Entero_fiAA91_ss_NC_022750: tail length determinator; NCTC11358_01738; phage(gi557307606)0.0Showinfo_outline
451729540..1730019PHAGE_Escher_pro147_NC_028896: tail protein; NCTC11358_01739; phage(gi971753720)1.02e-93Showinfo_outline
461730019..1731170PHAGE_Entero_fiAA91_ss_NC_022750: putative phage control protein D; NCTC11358_01740; phage(gi557307608)0.0Showinfo_outline
471731261..1731482PHAGE_Entero_fiAA91_ss_NC_022750: activator of late transcription; NCTC11358_01741; phage(gi557307609)2.25e-31Showinfo_outline
481731579..1731603attR0.0Showinfo_outline

Region 3, total 66 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(2847041..2847385)PHAGE_Salmon_epsilon15_NC_004775: tail fiber; NCTC11358_02902; phage(gi30387399)2.45e-30Showinfo_outline
2complement(2847345..2849045)PHAGE_Salmon_epsilon15_NC_004775: tail fiber; NCTC11358_02903; phage(gi30387399)1.93e-14Showinfo_outline
3complement(2849122..2850264)PHAGE_Pseudo_PS_1_NC_029066: tail protein; NCTC11358_02904; phage(gi985757719)2.91e-52Showinfo_outline
4complement(2850360..2850758)PHAGE_Pseudo_PMG1_NC_016765: putative tail protein; NCTC11358_02905; phage(gi374531670)3.42e-12Showinfo_outline
5complement(2851185..2851496)kinase; NCTC11358_029060.0Showinfo_outline
6complement(2851567..2852199)PHAGE_Pseudo_PAJU2_NC_011373: hypothetical protein; NCTC11358_02907; phage(gi209552441)2.46e-25Showinfo_outline
7complement(2852196..2852576)PHAGE_Pseudo_phi297_NC_016762: hypothetical protein; NCTC11358_02908; phage(gi374531303)1.34e-22Showinfo_outline
8complement(2852586..2853095)PHAGE_Pseudo_D3_NC_002484: hypothetical protein; NCTC11358_02909; phage(gi9635614)5.13e-35Showinfo_outline
9complement(2853253..2853405)PHAGE_Pseudo_PAJU2_NC_011373: hypothetical protein; NCTC11358_02910; phage(gi209552438)4.34e-07Showinfo_outline
10complement(2853446..2853718)PHAGE_Pseudo_PAJU2_NC_011373: hypothetical protein; NCTC11358_02911; phage(gi209552438)2.86e-25Showinfo_outline
11complement(2853803..2854339)PHAGE_Idioma_Phi1M2_2_NC_025471: putative tail tape measure protein; NCTC11358_02912; phage(gi722142267)9.44e-18Showinfo_outline
12complement(2854287..2855798)PHAGE_Pseudo_PMG1_NC_016765: tail tape measure protein; NCTC11358_02913; phage(gi374531664)5.25e-24Showinfo_outline
13complement(2856448..2856951)type VI secretion-associated protein, VC_A0118 family; NCTC11358_029140.0Showinfo_outline
14complement(2856948..2857883)PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_030909: hypothetical protein; NCTC11358_02915; phage(gi100072)7.37e-12Showinfo_outline
15complement(2857966..2858496)PHAGE_Salmon_SE1_NC_011802: hypothetical protein; NCTC11358_02916; phage(gi219681238)7.75e-79Showinfo_outline
16complement(2858670..2858837)Uncharacterised protein; NCTC11358_029170.0Showinfo_outline
17complement(2859005..2859487)PHAGE_Pseudo_phiPSA1_NC_024365: hypothetical protein; NCTC11358_02918; phage(gi658307708)1.88e-11Showinfo_outline
18complement(2859541..2860713)PHAGE_Vibrio_VpKK5_NC_026610: tail subunit; NCTC11358_02919; phage(gi764162154)4.39e-13Showinfo_outline
19complement(2860737..2861129)PHAGE_Pseudo_phiPSA1_NC_024365: hypothetical protein; NCTC11358_02920; phage(gi658307759)1.16e-19Showinfo_outline
20complement(2861126..2861677)PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC11358_02921; phage(gi356870610)4.18e-36Showinfo_outline
21complement(2861679..2862062)PHAGE_Pseudo_YMC11/02/R656_NC_028657: hypothetical protein; NCTC11358_02922; phage(gi966197873)4.12e-29Showinfo_outline
22complement(2862064..2862459)PHAGE_Pseudo_YMC11/02/R656_NC_028657: hypothetical protein; NCTC11358_02923; phage(gi966197874)2.30e-18Showinfo_outline
23complement(2862781..2863734)PHAGE_Vibrio_pYD38_B_NC_021561: major capsid protein; NCTC11358_02924; phage(gi514231589)6.45e-148Showinfo_outline
24complement(2863745..2864530)PHAGE_Xantho_Xp15_NC_007024: putative phage structural protein; NCTC11358_02925; phage(gi66392059)2.10e-19Showinfo_outline
25complement(2864615..2865727)PHAGE_Pseudo_PS_1_NC_029066: head morphogenesis protein; NCTC11358_02926; phage(gi985757697)1.62e-110Showinfo_outline
26complement(2865711..2867111)PHAGE_Paraco_vB_PmaS_IMEP1_NC_026608: portal protein; NCTC11358_02927; phage(gi764162030)2.62e-81Showinfo_outline
27complement(2867111..2868418)PHAGE_Acinet_vB_AbaS_TRS1_NC_031098: hypothetical protein; NCTC11358_02928; phage(gi100002)0.0Showinfo_outline
28complement(2868396..2869400)PHAGE_Burkho_BcepMigl_NC_019917: terminase small subunit; NCTC11358_02929; phage(gi431809885)7.60e-56Showinfo_outline
29complement(2869949..2870131)Uncharacterised protein; NCTC11358_029300.0Showinfo_outline
30complement(2870263..2870508)PHAGE_Entero_ST104_NC_005841: hypothetical protein; NCTC11358_02931; phage(gi46358693)1.54e-10Showinfo_outline
31complement(2870912..2871106)PHAGE_Escher_vB_EcoS_FFH1_NC_024139: hypothetical protein; NCTC11358_02932; phage(gi640884327)1.99e-25Showinfo_outline
32complement(2871179..2871400)DNA gyrase subunit beta; NCTC11358_029330.0Showinfo_outline
33complement(2871961..2872341)PHAGE_Salmon_118970_sal4_NC_030919: hypothetical protein; NCTC11358_02934; phage(gi100015)9.12e-26Showinfo_outline
34complement(2872338..2872526)PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC11358_02935; phage(gi428782716)1.27e-18Showinfo_outline
35complement(2872471..2872746)PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC11358_02936; phage(gi428782715)8.97e-36Showinfo_outline
36complement(2872743..2873093)PHAGE_Pseudo_vB_Pae_Kakheti25_NC_017864: holin; NCTC11358_02937; phage(gi388542661)3.66e-09Showinfo_outline
37complement(2873090..2873629)PHAGE_Erwini_vB_EamP_S6_NC_019514: endolysin; NCTC11358_02938; phage(gi422935930)5.82e-81Showinfo_outline
38complement(2873626..2873937)PHAGE_Salmon_ST64T_NC_004348: holin protein; NCTC11358_02939; phage(gi24371577)7.45e-48Showinfo_outline
39complement(2874915..2874986)tRNA0.0Showinfo_outline
40complement(2875222..2876031)PHAGE_Phage_Gifsy_2_NC_010393: prophage antitermination protein; late gene regulator; Lamba gpQ homolog; NCTC11358_02942; phage(gi169257290)2.85e-78Showinfo_outline
41complement(2876028..2876168)PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; NCTC11358_02943; phage(gi169257289)4.83e-07Showinfo_outline
42complement(2876394..2876870)PHAGE_Phage_Gifsy_2_NC_010393: NinG; NCTC11358_02944; phage(gi169257288)8.40e-46Showinfo_outline
43complement(2877184..2877780)PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; NCTC11358_02945; phage(gi169257286)5.16e-113Showinfo_outline
44complement(2878170..2878403)PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage damage-inducible protein DinI; NCTC11358_02946; phage(gi169257284)5.21e-35Showinfo_outline
45complement(2878552..2880537)PHAGE_Pectob_ZF40_NC_019522: putative methylase; NCTC11358_02947; phage(gi422936661)0.0Showinfo_outline
46complement(2880534..2880791)PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; NCTC11358_02948; phage(gi100124)7.51e-14Showinfo_outline
47complement(2880791..2881042)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC11358_02949; phage(gi428782346)2.04e-15Showinfo_outline
48complement(2881035..2881238)PHAGE_Entero_VT2phi_272_NC_028656: hypothetical protein; NCTC11358_02950; phage(gi966197733)3.06e-35Showinfo_outline
49complement(2881235..2881603)PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; NCTC11358_02951; phage(gi169257281)1.09e-16Showinfo_outline
50complement(2881611..2882360)PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA replication protein; NCTC11358_02952; phage(gi169257280)2.73e-159Showinfo_outline
51complement(2882363..2883271)PHAGE_Shigel_Stx_NC_029120: primosomal protein I; NCTC11358_02953; phage(gi985761262)4.70e-117Showinfo_outline
52complement(2883286..2883474)PHAGE_Entero_P88_NC_026014: carboxylate-amine ligase; NCTC11358_02954; phage(gi744692719)2.28e-05Showinfo_outline
53complement(2883562..2884104)PHAGE_Entero_mEp237_NC_019704: CII protein; NCTC11358_02955; phage(gi435439306)2.55e-90Showinfo_outline
54complement(2884107..2884340)PHAGE_Phage_Gifsy_2_NC_010393: putative bacteriophage regulatory protein; Lambda gpCro analog; NCTC11358_02956; phage(gi169257277)9.15e-11Showinfo_outline
552884442..2884825PHAGE_Salmon_SEN34_NC_028699: putative DNA-binding protein; NCTC11358_02957; phage(gi966201460)1.64e-62Showinfo_outline
562885264..2886013Uncharacterised protein; NCTC11358_029580.0Showinfo_outline
572886010..2886837Protein of uncharacterised function (DUF3037); NCTC11358_029590.0Showinfo_outline
58complement(2886882..2887064)PHAGE_Salmon_118970_sal4_NC_030919: hypothetical protein; NCTC11358_02960; phage(gi100018)9.72e-21Showinfo_outline
592887359..2887667PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC11358_02961; phage(gi356870645)9.93e-37Showinfo_outline
602887964..2888155secreted protein; NCTC11358_029620.0Showinfo_outline
612888164..2888319PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; NCTC11358_02963; phage(gi169257274)8.42e-19Showinfo_outline
622888457..2891555PHAGE_Phage_Gifsy_2_NC_010393: putatitive bacteriophage exodeoxyribonuclease VIII; NCTC11358_02964; phage(gi169257272)0.0Showinfo_outline
632891568..2892656PHAGE_Phage_Gifsy_2_NC_010393: conserved hypothetical bacteriophage protein; NCTC11358_02965; phage(gi169257271)2.88e-139Showinfo_outline
642892691..2893035Uncharacterised protein; NCTC11358_029660.0Showinfo_outline
652893028..2894074PHAGE_Salmon_ST64T_NC_004348: hypothetical protein; NCTC11358_02967; phage(gi24371543)2.39e-59Showinfo_outline
662894208..2894468PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC11358_02968; phage(gi428782341)7.43e-25Showinfo_outline

Region 4, total 48 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(3384538..3385263)PHAGE_Pseudo_DMS3_NC_008717: putative c repressor; NCTC11358_03465; phage(gi156523050)7.14e-30Showinfo_outline
23385672..3386727PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: transposase; NCTC11358_03466; phage(gi971741504)1.28e-51Showinfo_outline
33386666..3387790PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: transposase; NCTC11358_03467; phage(gi971741504)3.91e-101Showinfo_outline
43387800..3388693PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: DNA transposition protein B; NCTC11358_03468; phage(gi971741505)5.06e-89Showinfo_outline
53388937..3389170Uncharacterised protein; NCTC11358_034690.0Showinfo_outline
63389356..3389994PHAGE_Pseudo_B3_NC_006548: hypothetical protein; NCTC11358_03470; phage(gi56692574)7.45e-89Showinfo_outline
73390257..3390424Uncharacterised protein; NCTC11358_034710.0Showinfo_outline
83390425..3390961PHAGE_Entero_Mu_NC_000929: hypothetical protein; NCTC11358_03472; phage(gi9633502)7.37e-21Showinfo_outline
93391175..3391714PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC11358_03473; phage(gi428782349)1.84e-66Showinfo_outline
103391692..3391856Uncharacterised protein; NCTC11358_034740.0Showinfo_outline
113391872..3392129PHAGE_Salmon_SPN3UB_NC_019545: putative DNA-binding protein; NCTC11358_03475; phage(gi423262429)3.91e-12Showinfo_outline
123392129..3392392Uncharacterised protein; NCTC11358_034760.0Showinfo_outline
133392373..3392588Uncharacterised protein; NCTC11358_034770.0Showinfo_outline
143392648..3393124PHAGE_Pseudo_D3112_NC_005178: hypothetical protein; NCTC11358_03478; phage(gi38229130)2.87e-25Showinfo_outline
153393514..3393993Uncharacterised protein; NCTC11358_034790.0Showinfo_outline
163394077..3394730PHAGE_Cronob_ENT47670_NC_019927: putative endolysin; NCTC11358_03480; phage(gi431810515)9.88e-49Showinfo_outline
173394712..3394960Protein of uncharacterised function (DUF2644); NCTC11358_034810.0Showinfo_outline
183394950..3395585Uncharacterised protein; NCTC11358_034820.0Showinfo_outline
193395582..3395827PHAGE_Pseudo_73_NC_007806: hypothetical protein ORF001; NCTC11358_03483; phage(gi148912829)4.87e-05Showinfo_outline
203395824..3396138Uncharacterised protein; NCTC11358_034840.0Showinfo_outline
213396140..3396640PHAGE_Pseudo_JBD24_NC_020203: hypothetical protein; NCTC11358_03485; phage(gi448245073)1.23e-64Showinfo_outline
223396633..3396842Uncharacterised protein; NCTC11358_034860.0Showinfo_outline
233396843..3397172PHAGE_Rhodob_RcapMu_NC_016165: hypothetical protein; NCTC11358_03487; phage(gi356870872)4.15e-39Showinfo_outline
243397176..3397535Uncharacterised protein; NCTC11358_034880.0Showinfo_outline
253397540..3398268PHAGE_Haemop_SuMu_NC_019455: terminase; NCTC11358_03489; phage(gi418489081)1.43e-103Showinfo_outline
263398246..3399244PHAGE_Pseudo_MP38_NC_011611: hypothetical protein; NCTC11358_03490; phage(gi215479952)5.20e-143Showinfo_outline
273399244..3400812PHAGE_Pseudo_MP29_NC_011613: portal protein; NCTC11358_03491; phage(gi215480002)9.64e-152Showinfo_outline
283400805..3402076PHAGE_Ralsto_RS138_NC_029107: virion morphogenesis protein; NCTC11358_03492; phage(gi985760940)6.50e-71Showinfo_outline
293402066..3402608PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: G protein 2; NCTC11358_03493; phage(gi971741531)2.10e-14Showinfo_outline
303402843..3403928PHAGE_Ralsto_RS138_NC_029107: Mu-like prophage I protein; NCTC11358_03494; phage(gi985760943)1.48e-59Showinfo_outline
313403921..3404316PHAGE_Pseudo_JBD25_NC_027992: hypothetical protein; NCTC11358_03495; phage(gi100037)5.35e-35Showinfo_outline
323404328..3405236PHAGE_Pseudo_LPB1_NC_027298: putative major head subunit protein; NCTC11358_03496; phage(gi848469613)2.86e-120Showinfo_outline
333405237..3405659Uncharacterised protein; NCTC11358_034970.0Showinfo_outline
343405672..3406100PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: hypothetical protein; NCTC11358_03498; phage(gi971741535)2.28e-22Showinfo_outline
353406097..3406756PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: hypothetical protein; NCTC11358_03499; phage(gi971741536)2.20e-26Showinfo_outline
363406737..3406934PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: hypothetical protein; NCTC11358_03500; phage(gi971741537)1.51e-10Showinfo_outline
373406934..3408352PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: tail sheath protein; NCTC11358_03501; phage(gi971741538)6.43e-129Showinfo_outline
383408366..3408740PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: tail tube protein; NCTC11358_03502; phage(gi971741539)1.29e-35Showinfo_outline
393408740..3409135Uncharacterised protein; NCTC11358_035030.0Showinfo_outline
403409249..3411321PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: tail length tape measure protein; NCTC11358_03504; phage(gi971741542)9.22e-109Showinfo_outline
413411406..3411969PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: DNA circularization protein; NCTC11358_03505; phage(gi971741543)1.05e-25Showinfo_outline
423412026..3412721PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: DNA circularization protein; NCTC11358_03506; phage(gi971741543)8.27e-19Showinfo_outline
433412705..3413943PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: tail protein P; NCTC11358_03507; phage(gi971741544)5.78e-81Showinfo_outline
443413927..3414508PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: baseplate assembly protein; NCTC11358_03508; phage(gi971741545)2.80e-46Showinfo_outline
453415050..3415991PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: baseplate J protein; NCTC11358_03509; phage(gi971741547)4.88e-82Showinfo_outline
463415988..3416629PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: tail protein; NCTC11358_03510; phage(gi971741548)1.64e-32Showinfo_outline
473416636..3417172PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: defective tail fiber protein; NCTC11358_03511; phage(gi971741549)8.82e-10Showinfo_outline
483417581..3420142PHAGE_Salmon_epsilon15_NC_004775: tail fiber; NCTC11358_03512; phage(gi30387399)3.39e-47Showinfo_outline

Region 5, total 33 CDS

#CDS PositionBLAST HitE-ValueSequence
15377657..5377669attL0.0Showinfo_outline
2complement(5377757..5378461)PROPHAGE_Brucel_1330: transposase, putative; NCTC11358_05451; phage(gi23502708)1.98e-53Showinfo_outline
3complement(5378642..5379469)Type I restriction-modification system methyltransferase subunit; NCTC11358_054520.0Showinfo_outline
4complement(5379520..5379666)Uncharacterised protein; NCTC11358_054530.0Showinfo_outline
5complement(5379761..5380108)Uncharacterised protein; NCTC11358_054540.0Showinfo_outline
6complement(5380175..5380555)Uncharacterised protein; NCTC11358_054550.0Showinfo_outline
7complement(5381272..5381685)putative DNA-binding protein; NCTC11358_054560.0Showinfo_outline
8complement(5381686..5381964)PHAGE_Klebsi_phiKO2_NC_005857: Gp48; NCTC11358_05457; phage(gi46402134)5.85e-12Showinfo_outline
9complement(5382355..5382579)Uncharacterised protein; NCTC11358_054580.0Showinfo_outline
10complement(5382590..5382802)Uncharacterised protein; NCTC11358_054590.0Showinfo_outline
11complement(5382863..5383219)putative dopa decarboxylase protein remnant; NCTC11358_054600.0Showinfo_outline
12complement(5384390..5384740)Uncharacterised protein; NCTC11358_054610.0Showinfo_outline
13complement(5384737..5385009)Uncharacterised protein; NCTC11358_054620.0Showinfo_outline
14complement(5386089..5386463)Uncharacterised protein; NCTC11358_054640.0Showinfo_outline
15complement(5386519..5386845)PHAGE_Rhodob_RcapNL_NC_020489: hypothetical protein; NCTC11358_05465; phage(gi461475014)7.68e-17Showinfo_outline
16complement(5386842..5387570)plasmid SOS inhibition protein A; NCTC11358_054660.0Showinfo_outline
17complement(5387567..5387998)plasmid SOS inhibition protein B; NCTC11358_054670.0Showinfo_outline
18complement(5388043..5390100)PHAGE_Gordon_Hedwig_NC_031099: RNA polymerase binding protein; NCTC11358_05468; phage(gi100054)1.03e-06Showinfo_outline
19complement(5390170..5390418)Bacterial protein of uncharacterised function (DUF905); NCTC11358_054690.0Showinfo_outline
20complement(5390467..5391009)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; NCTC11358_05470; phage(gi100049)1.43e-64Showinfo_outline
21complement(5391748..5392065)Uncharacterised protein; NCTC11358_054710.0Showinfo_outline
22complement(5392100..5392354)PHAGE_Escher_HK639_NC_016158: DNA pol III theta; NCTC11358_05472; phage(gi356870660)8.20e-22Showinfo_outline
23complement(5392591..5393016)PHAGE_Pseudo_YuA_NC_010116: hypothetical protein; NCTC11358_05473; phage(gi162135127)2.26e-14Showinfo_outline
24complement(5393539..5393769)Uncharacterised protein; NCTC11358_054740.0Showinfo_outline
25complement(5394003..5395490)PHAGE_Pseudo_phi3_NC_030940: hypothetical protein; NCTC11358_05475; phage(gi100001)3.53e-33Showinfo_outline
265395891..5396316PHAGE_Klebsi_phiKO2_NC_005857: Gp23; NCTC11358_05477; phage(gi46402109)1.98e-19Showinfo_outline
275396316..5397272PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; NCTC11358_05478; phage(gi431811050)4.40e-144Showinfo_outline
285397153..5397165attR0.0Showinfo_outline
295397217..5397588PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; NCTC11358_05479; phage(gi431811050)1.17e-43Showinfo_outline
305397667..5397918RelB/StbD; NCTC11358_054800.0Showinfo_outline
315397972..5398277Uncharacterised protein; NCTC11358_054810.0Showinfo_outline
32complement(5399388..5400359)PHAGE_Klebsi_phiKO2_NC_005857: Gp24; NCTC11358_05482; phage(gi46402110)1.12e-98Showinfo_outline
33complement(5400359..5401525)PHAGE_Klebsi_phiKO2_NC_005857: plasmid partition protein SopA; NCTC11358_05483; phage(gi46402111)0.0Showinfo_outline
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Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 5449135 bps
Phages: 5
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download