Submission Results

Sequence Name: Not Available

GenBank Accession Number: UGMP00000000.1

GenInfo (GI) Number: 0000000000

Download Results: UGMP00000000.1.PHASTER.zip

gi|00000000|ref|UGMP00000000.1| Klebsiella pneumoniae strain NCTC9162, whole genome shotgun 5268645, gc%: 57.48%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
148.9Kbintact120763854759-3903750 info_outlinePHAGE_Cronob_ENT47670_NC_019927(14)52.37%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|UGMP00000000.1| Klebsiella pneumoniae strain NCTC9162, whole genome shotgun 5268645, gc%: 57.48%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 78 CDS

#CDS PositionBLAST HitE-ValueSequence
13854759..3854786attL0.0Showinfo_outline
2complement(3854955..3855272)PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC9162_03768; phage(gi428782690)8.63e-30Showinfo_outline
3complement(3855272..3855511)PHAGE_Entero_HK225_NC_019717: hypothetical protein; NCTC9162_03769; phage(gi428782404)2.30e-21Showinfo_outline
4complement(3855643..3858942)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC9162_03770; phage(gi431810496)4.72e-06Showinfo_outline
5complement(3859028..3860470)PHAGE_Cronob_ENT47670_NC_019927: putative tail protein; NCTC9162_03771; phage(gi431810495)5.87e-150Showinfo_outline
6complement(3860499..3861506)PHAGE_Cronob_ENT47670_NC_019927: putative tail protein; NCTC9162_03772; phage(gi431810495)6.37e-61Showinfo_outline
7complement(3861493..3861888)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC9162_03773; phage(gi431810526)2.86e-44Showinfo_outline
8complement(3861885..3862355)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC9162_03774; phage(gi431810518)3.62e-33Showinfo_outline
9complement(3862355..3862831)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC9162_03775; phage(gi431810519)3.28e-50Showinfo_outline
103862970..3863116Uncharacterised protein; NCTC9162_037760.0Showinfo_outline
11complement(3863188..3863367)Uncharacterised protein; NCTC9162_037770.0Showinfo_outline
12complement(3863408..3866854)PHAGE_Vibrio_pYD38_A_NC_021534: tail length tape measure protein; NCTC9162_03778; phage(gi514051037)0.0Showinfo_outline
13complement(3866947..3867450)PHAGE_Brucel_BiPBO1_NC_031264: hypothetical protein; NCTC9162_03779; phage(gi100067)1.10e-06Showinfo_outline
14complement(3867578..3868363)PHAGE_Escher_PA2_NC_028449: antirepressor protein; NCTC9162_03780; phage(gi953358051)1.05e-39Showinfo_outline
15complement(3868429..3869142)PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; NCTC9162_03781; phage(gi423262398)4.10e-66Showinfo_outline
16complement(3869132..3869302)PHAGE_Salmon_vB_SosS_Oslo_NC_018279: Arc-like DNA binding domain protein; NCTC9162_03782; phage(gi399528776)6.62e-26Showinfo_outline
173869402..3869761PHAGE_Salmon_SPN3UB_NC_019545: Arc-like DNA binding domain protein; NCTC9162_03783; phage(gi423262396)1.37e-18Showinfo_outline
18complement(3869778..3870545)Uncharacterised protein; NCTC9162_037840.0Showinfo_outline
19complement(3870542..3870796)PHAGE_Entero_mEp235_NC_019708: hypothetical protein; NCTC9162_03785; phage(gi428781870)4.62e-29Showinfo_outline
20complement(3870799..3871554)PHAGE_Entero_mEpX1_NC_019709: hypothetical protein; NCTC9162_03786; phage(gi428781933)1.57e-75Showinfo_outline
21complement(3871730..3872407)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC9162_03787; phage(gi431810508)3.78e-96Showinfo_outline
22complement(3872460..3873212)PHAGE_Cronob_ENT47670_NC_019927: major tail subunit; NCTC9162_03788; phage(gi431810520)3.45e-41Showinfo_outline
23complement(3873281..3873673)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC9162_03789; phage(gi431810530)1.90e-44Showinfo_outline
24complement(3873670..3874095)PHAGE_Vibrio_pYD38_A_NC_021534: hypothetical protein; NCTC9162_03790; phage(gi514050969)4.88e-39Showinfo_outline
25complement(3874098..3874460)PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: hypothetical protein; NCTC9162_03791; phage(gi971749596)4.02e-26Showinfo_outline
26complement(3874460..3874633)PHAGE_Salmon_vB_SosS_Oslo_NC_018279: hypothetical protein; NCTC9162_03792; phage(gi399528768)4.41e-19Showinfo_outline
27complement(3874633..3875013)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC9162_03793; phage(gi431810531)2.95e-39Showinfo_outline
28complement(3875016..3875282)Uncharacterised protein; NCTC9162_037940.0Showinfo_outline
29complement(3875293..3876387)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC9162_03795; phage(gi431810503)1.89e-160Showinfo_outline
30complement(3876399..3876827)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC9162_03796; phage(gi431810525)6.46e-56Showinfo_outline
31complement(3876831..3878216)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC9162_03797; phage(gi431810499)0.0Showinfo_outline
32complement(3878289..3878765)Uncharacterised protein; NCTC9162_037980.0Showinfo_outline
33complement(3878807..3879811)PHAGE_Cronob_ENT47670_NC_019927: phage head morphogenesis; NCTC9162_03799; phage(gi431810507)2.03e-151Showinfo_outline
34complement(3879786..3881207)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; NCTC9162_03800; phage(gi431810500)0.0Showinfo_outline
35complement(3881220..3882692)PHAGE_Cronob_phiES15_NC_018454: terminase large subunit; NCTC9162_03801; phage(gi401817592)0.0Showinfo_outline
36complement(3882692..3883294)PHAGE_Escher_HK639_NC_016158: terminase small subunit; NCTC9162_03802; phage(gi356870601)3.46e-104Showinfo_outline
373883511..3883672Uncharacterised protein; NCTC9162_038030.0Showinfo_outline
383883665..3883994Uncharacterised protein; NCTC9162_038040.0Showinfo_outline
39complement(3884100..3884564)PHAGE_Salmon_HK620_NC_002730: endopeptidase; NCTC9162_03805; phage(gi13559860)1.45e-77Showinfo_outline
40complement(3884561..3885091)PHAGE_Escher_TL_2011c_NC_019442: lysozyme; NCTC9162_03806; phage(gi418487070)5.02e-101Showinfo_outline
41complement(3885094..3885342)PHAGE_Entero_phi80_NC_021190: holin; NCTC9162_03807; phage(gi824479635)1.05e-08Showinfo_outline
42complement(3885868..3886677)PHAGE_Entero_phi80_NC_021190: late transcription antitermination protein; NCTC9162_03808; phage(gi824479634)8.07e-157Showinfo_outline
43complement(3886674..3886814)PHAGE_Phage_Gifsy_1_NC_010392: conserved hypothetical bacteriophage protein; NCTC9162_03809; phage(gi169257245)1.46e-11Showinfo_outline
44complement(3886811..3887449)PHAGE_Salmon_SPN3UB_NC_019545: NinG; NCTC9162_03810; phage(gi423262439)2.47e-109Showinfo_outline
45complement(3887442..3887612)PHAGE_Escher_HK639_NC_016158: NinE; NCTC9162_03811; phage(gi356870663)6.63e-21Showinfo_outline
46complement(3887593..3888060)PHAGE_Stx2_c_1717_NC_011357: NinB protein; NCTC9162_03812; phage(gi209447158)5.70e-42Showinfo_outline
47complement(3888262..3888519)PHAGE_Entero_P1_NC_005856: Hot; NCTC9162_03813; phage(gi46401721)1.22e-37Showinfo_outline
48complement(3888519..3888758)Uncharacterised protein; NCTC9162_038140.0Showinfo_outline
49complement(3888840..3889079)PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC9162_03815; phage(gi356870632)3.83e-13Showinfo_outline
50complement(3889072..3889338)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; NCTC9162_03816; phage(gi100092)5.55e-33Showinfo_outline
51complement(3889331..3890134)PHAGE_Vibrio_pYD38_A_NC_021534: hypothetical protein; NCTC9162_03817; phage(gi514051012)4.32e-48Showinfo_outline
52complement(3890131..3890499)PHAGE_Entero_HK225_NC_019717: HNH endonuclease; NCTC9162_03818; phage(gi428782431)7.01e-41Showinfo_outline
53complement(3890499..3891221)PHAGE_Entero_Sf101_NC_027398: hypothetical protein; NCTC9162_03819; phage(gi849122284)6.01e-27Showinfo_outline
54complement(3891218..3891862)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; NCTC9162_03820; phage(gi100095)7.65e-133Showinfo_outline
55complement(3891859..3892386)PHAGE_Entero_ES18_NC_006949: gp43; NCTC9162_03821; phage(gi62362256)3.66e-42Showinfo_outline
56complement(3892383..3892685)PHAGE_Serrat_phiMAM1_NC_020083: putative transcriptional regulator-HTH domain; NCTC9162_03822; phage(gi440789434)1.26e-06Showinfo_outline
57complement(3892685..3893461)PHAGE_Entero_Tyrion_NC_031077: hypothetical protein; NCTC9162_03823; phage(gi100044)2.21e-122Showinfo_outline
58complement(3893458..3894186)PHAGE_Pectob_ZF40_NC_019522: putative replication protein; NCTC9162_03824; phage(gi422936654)1.16e-56Showinfo_outline
59complement(3894320..3894541)PHAGE_Entero_mEp213_NC_019720: CII protein; NCTC9162_03825; phage(gi428782643)7.99e-10Showinfo_outline
60complement(3894581..3894808)PHAGE_Escher_HK75_NC_016160: regulatory protein cro; NCTC9162_03826; phage(gi356870715)1.81e-24Showinfo_outline
613894997..3895599PHAGE_Salmon_ST160_NC_014900: C2; NCTC9162_03827; phage(gi318065925)1.81e-95Showinfo_outline
623895622..3895741Uncharacterised protein; NCTC9162_038280.0Showinfo_outline
633895891..3896433Uncharacterised protein; NCTC9162_038290.0Showinfo_outline
643896421..3897197PHAGE_Burkho_phi6442_NC_009235: gp47, conserved hypothetical protein; NCTC9162_03830; phage(gi134288670)2.64e-10Showinfo_outline
653897804..3897914Uncharacterised protein; NCTC9162_038310.0Showinfo_outline
663897943..3898101Uncharacterised protein; NCTC9162_038320.0Showinfo_outline
673898190..3898474PHAGE_Entero_phi80_NC_021190: host RecBCD/SbcCD enzymes inhibitor; NCTC9162_03833; phage(gi824479615)1.72e-19Showinfo_outline
683898486..3898989PHAGE_Cellul_phi10:1_NC_021802: hypothetical protein; NCTC9162_03834; phage(gi526178111)2.16e-08Showinfo_outline
693898986..3899609PHAGE_Cellul_phi10:1_NC_021802: exonuclease, YqaJ (recombinase); NCTC9162_03835; phage(gi526178112)1.82e-57Showinfo_outline
703899606..3900034PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC9162_03836; phage(gi356870637)9.28e-82Showinfo_outline
713900031..3900687PHAGE_Escher_HK639_NC_016158: adenine specific methyltransferase; NCTC9162_03837; phage(gi356870635)9.06e-143Showinfo_outline
723900684..3900902PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; NCTC9162_03838; phage(gi157165994)2.89e-09Showinfo_outline
733900899..3901171PHAGE_Shigel_Sf6_NC_005344: gene 24 protein; NCTC9162_03839; phage(gi41057302)2.83e-32Showinfo_outline
743901168..3901872PHAGE_Sinorh_phiLM21_NC_029046: hypothetical protein; NCTC9162_03840; phage(gi981221041)9.11e-25Showinfo_outline
753901869..3902090PHAGE_Stx2_vB_EcoP_24B_NC_027984: putative C4 zinc finger protein; NCTC9162_03841; phage(gi937456240)3.61e-16Showinfo_outline
763902090..3902329PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; NCTC9162_03842; phage(gi157165989)7.75e-16Showinfo_outline
773902554..3903717PHAGE_Escher_HK639_NC_016158: integrase; NCTC9162_03843; phage(gi356870629)0.0Showinfo_outline
783903750..3903777attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 5268645 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download