Submission Results

Sequence Name: Not Available

GenBank Accession Number: UGMU00000000.1

GenInfo (GI) Number: 0000000000

Download Results: UGMU00000000.1.PHASTER.zip

gi|00000000|ref|UGMU00000000.1| Klebsiella pneumoniae strain NCTC9153, whole genome shotgun 5394660, gc%: 57.35%

Download summary as .txt file: summary.txt file_download

Total: 8 prophage regions have been identified, of which 5 regions are intact, 2 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
138.9Kbincomplete501460525-99461 info_outlinePHAGE_Entero_P4_NC_001609(6)55.23%Show info_outline
237.6Kbintact15048910806-948460 info_outlinePHAGE_Entero_P88_NC_026014(21)55.25%Show info_outline
353.5Kbintact150561215447-1268988 info_outlinePHAGE_Acinet_vB_AbaS_TRS1_NC_031098(8)50.88%Show info_outline
413.2Kbincomplete30152925877-2939125 info_outlinePHAGE_Entero_P4_NC_001609(6)50.22%Show info_outline
539.5Kbintact150473455929-3495492 info_outlinePHAGE_Salmon_RE_2010_NC_019488(32)54.28%Show info_outline
634.4Kbintact150244923873-4958326 info_outlinePHAGE_Stx2_c_1717_NC_011357(3)48.91%Show info_outline
738.1Kbquestionable90214949328-4987488 info_outlinePHAGE_Salmon_SJ46_NC_031129(5)50.19%Show info_outline
813.3Kbintact96145343035-5356343 info_outlinePHAGE_Entero_P4_NC_001609(9)49.99%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|UGMU00000000.1| Klebsiella pneumoniae strain NCTC9153, whole genome shotgun 5394660, gc%: 57.35%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 16 CDS

#CDS PositionBLAST HitE-ValueSequence
160525..60536attL0.0Showinfo_outline
274110..74847PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; NCTC9153_00075; phage(gi371496158)6.05e-45Showinfo_outline
3complement(76235..77098)Uncharacterised protein; NCTC9153_000760.0Showinfo_outline
4complement(77395..79728)PHAGE_Entero_P4_NC_001609: DNA primase; NCTC9153_00077; phage(gi9627512)0.0Showinfo_outline
5complement(79740..80060)PHAGE_Entero_P4_NC_001609: hypothetical protein; NCTC9153_00078; phage(gi9627513)6.89e-65Showinfo_outline
6complement(80057..80284)Uncharacterised protein; NCTC9153_000790.0Showinfo_outline
7complement(80281..80475)PHAGE_Entero_P4_NC_001609: putative CI repressor; NCTC9153_00080; phage(gi9627516)8.91e-30Showinfo_outline
8complement(80835..81101)PHAGE_Entero_P4_NC_001609: transcriptional regulator; NCTC9153_00083; phage(gi9627517)1.45e-41Showinfo_outline
981662..82399PHAGE_Entero_P4_NC_001609: head size determination protein sid; NCTC9153_00084; phage(gi9627518)1.74e-94Showinfo_outline
1082396..82641PHAGE_Entero_186_NC_001317: B protein; NCTC9153_00085; phage(gi9634083)8.60e-18Showinfo_outline
1182659..83225PHAGE_Entero_P4_NC_001609: amber mutation-suppressing protein; NCTC9153_00086; phage(gi9627520)1.68e-74Showinfo_outline
12complement(83631..84344)Bacteriophage Lambda NinG protein; NCTC9153_000870.0Showinfo_outline
13complement(84542..85237)SMC domain-containing protein; NCTC9153_000880.0Showinfo_outline
14complement(85764..86126)PROPHAGE_Escher_CFT073: putative prophage integrase; NCTC9153_00089; phage(gi26250313)2.48e-52Showinfo_outline
15complement(86170..86931)PROPHAGE_Escher_CFT073: putative prophage integrase; NCTC9153_00090; phage(gi26250313)1.71e-99Showinfo_outline
1699461..99472attR0.0Showinfo_outline

Region 2, total 50 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(910806..911594)PHAGE_Prochl_P_TIM68_NC_028955: hypothetical protein; NCTC9153_00925; phage(gi971760361)1.32e-07Showinfo_outline
2complement(911710..912159)HxlR family transcriptional regulator; NCTC9153_009260.0Showinfo_outline
3912312..913559glucose-1-phosphatase; NCTC9153_009270.0Showinfo_outline
4913566..913586attL0.0Showinfo_outline
5complement(913656..914663)PHAGE_Salmon_SEN4_NC_029015: integrase; NCTC9153_00928; phage(gi971765859)1.32e-127Showinfo_outline
6complement(914751..915053)PHAGE_Entero_P2_NC_001895: gpC; NCTC9153_00929; phage(gi9630358)2.19e-31Showinfo_outline
7915149..915481Regulatory phage protein cox; NCTC9153_009300.0Showinfo_outline
8915478..915594Uncharacterised protein; NCTC9153_009310.0Showinfo_outline
9915607..915870PHAGE_Salmon_SEN4_NC_029015: hypothetical protein; NCTC9153_00932; phage(gi971765866)1.55e-06Showinfo_outline
10915882..916121PHAGE_Entero_P88_NC_026014: DNA modification methyltransferase; NCTC9153_00933; phage(gi744692706)6.05e-06Showinfo_outline
11916118..916396Uncharacterised protein; NCTC9153_009340.0Showinfo_outline
12916465..916689Uncharacterised protein; NCTC9153_009350.0Showinfo_outline
13916686..917264PHAGE_Salmon_118970_sal3_NC_031940: zinc finger protein; NCTC9153_00936; phage(gi100107)2.06e-42Showinfo_outline
14917273..918085PHAGE_Salmon_SEN4_NC_029015: methyl-directed repair DNA adenine methylase; NCTC9153_00937; phage(gi971765820)1.25e-56Showinfo_outline
15918229..918402Uncharacterised protein; NCTC9153_009380.0Showinfo_outline
16918413..918565Uncharacterised protein; NCTC9153_009390.0Showinfo_outline
17918588..918749Uncharacterised protein; NCTC9153_009400.0Showinfo_outline
18918780..919109Uncharacterised protein; NCTC9153_009410.0Showinfo_outline
19919069..921729PHAGE_Salmon_SEN4_NC_029015: replication protein; NCTC9153_00942; phage(gi971765822)0.0Showinfo_outline
20921726..922229Uncharacterised protein; NCTC9153_009430.0Showinfo_outline
21922336..922821PHAGE_Salmon_SEN4_NC_029015: DNA methylase; NCTC9153_00944; phage(gi971765824)4.85e-66Showinfo_outline
22complement(923155..923808)PHAGE_Entero_mEp237_NC_019704: hypothetical protein; NCTC9153_00945; phage(gi435439321)8.34e-33Showinfo_outline
23complement(923903..924871)Protein of uncharacterised function (DUF2806); NCTC9153_009460.0Showinfo_outline
24complement(925316..926368)PHAGE_Salmon_SEN4_NC_029015: portal vertex protein; NCTC9153_00947; phage(gi971765828)1.65e-134Showinfo_outline
25complement(926368..928089)PHAGE_Salmon_SEN4_NC_029015: terminase ATPase subunit; NCTC9153_00948; phage(gi971765829)0.0Showinfo_outline
26928250..929083PHAGE_Salmon_SEN4_NC_029015: capsid scaffolding protein; NCTC9153_00949; phage(gi971765830)2.18e-62Showinfo_outline
27929108..930154PHAGE_Salmon_SEN4_NC_029015: major capsid protein; NCTC9153_00950; phage(gi971765831)9.79e-136Showinfo_outline
28930201..931109PHAGE_Salmon_SEN4_NC_029015: terminase endonuclease subunit; NCTC9153_00951; phage(gi971765832)1.28e-67Showinfo_outline
29931212..931709PHAGE_Salmon_SEN4_NC_029015: head completion-stabilization protein; NCTC9153_00952; phage(gi971765833)7.49e-46Showinfo_outline
30931709..931909PHAGE_Salmon_SEN4_NC_029015: tail component protein; NCTC9153_00953; phage(gi971765834)3.17e-20Showinfo_outline
31931900..932181Uncharacterised protein; NCTC9153_009540.0Showinfo_outline
32932178..932729PHAGE_Mannhe_phiMHaA1_NC_008201: endolysin; NCTC9153_00955; phage(gi109289945)1.04e-46Showinfo_outline
33932726..933121PHAGE_Entero_P88_NC_026014: hypothetical protein; NCTC9153_00956; phage(gi744692732)5.15e-08Showinfo_outline
34933266..933724PHAGE_Salmon_SEN4_NC_029015: tail protein; NCTC9153_00957; phage(gi971765838)1.87e-26Showinfo_outline
35933721..934359PHAGE_Salmon_SEN4_NC_029015: tail completion protein; NCTC9153_00958; phage(gi971765839)8.16e-57Showinfo_outline
36934359..934943PHAGE_Entero_P88_NC_026014: baseplate assembly protein V; NCTC9153_00959; phage(gi744692735)8.86e-82Showinfo_outline
37934940..935308PHAGE_Entero_P88_NC_026014: lysozyme family baseplate assembly protein; NCTC9153_00960; phage(gi744692736)1.39e-40Showinfo_outline
38935295..936194PHAGE_Salmon_SEN4_NC_029015: baseplate assembly protein J; NCTC9153_00961; phage(gi971765843)5.82e-114Showinfo_outline
39936226..936804PHAGE_Entero_P88_NC_026014: tail protein; NCTC9153_00962; phage(gi744692738)3.01e-51Showinfo_outline
40936791..939055PHAGE_Serrat_phiMAM1_NC_020083: tail spike protein head-binding protein; NCTC9153_00963; phage(gi440789307)1.58e-91Showinfo_outline
41939071..939355PHAGE_Serrat_phiMAM1_NC_020083: hypothetical protein; NCTC9153_00964; phage(gi440789309)1.01e-12Showinfo_outline
42939397..940560PHAGE_Salmon_SEN4_NC_029015: tail fiber protein; NCTC9153_00965; phage(gi971765845)6.33e-52Showinfo_outline
43complement(940686..941174)PHAGE_Entero_P88_NC_026014: tail protein; NCTC9153_00966; phage(gi744692744)4.55e-72Showinfo_outline
44complement(941184..943895)PHAGE_Erwini_ENT90_NC_019932: phage tail measure protein; NCTC9153_00967; phage(gi431810935)0.0Showinfo_outline
45complement(944058..944357)PHAGE_Salmon_SEN4_NC_029015: tail protein; NCTC9153_00968; phage(gi971765852)3.79e-19Showinfo_outline
46complement(944412..944927)PHAGE_Salmon_SEN4_NC_029015: major tail tube protein; NCTC9153_00969; phage(gi971765853)4.50e-48Showinfo_outline
47complement(944927..946108)PHAGE_Salmon_SEN4_NC_029015: tail sheath monomer; NCTC9153_00970; phage(gi971765854)1.28e-169Showinfo_outline
48946262..947416PHAGE_Salmon_SEN4_NC_029015: late control D protein; NCTC9153_00971; phage(gi971765856)2.90e-155Showinfo_outline
49947461..947709PHAGE_Entero_WPhi_NC_005056: Ogr; NCTC9153_00972; phage(gi33438926)3.77e-14Showinfo_outline
50948460..948480attR0.0Showinfo_outline

Region 3, total 58 CDS

#CDS PositionBLAST HitE-ValueSequence
11215447..1215462attL0.0Showinfo_outline
21215638..1216825PHAGE_Entero_mEp237_NC_019704: integrase; NCTC9153_01267; phage(gi435439292)6.28e-152Showinfo_outline
3complement(1217326..1218414)PHAGE_Entero_mEp237_NC_019704: recombinase RecT; NCTC9153_01268; phage(gi435439295)4.46e-122Showinfo_outline
4complement(1218427..1221468)PHAGE_Entero_mEp237_NC_019704: exonuclease; NCTC9153_01269; phage(gi435439296)0.0Showinfo_outline
5complement(1221606..1221761)PHAGE_Entero_mEp237_NC_019704: hypothetical protein; NCTC9153_01270; phage(gi435439297)1.80e-18Showinfo_outline
6complement(1221770..1221961)secreted protein; NCTC9153_012710.0Showinfo_outline
71222448..1222651PHAGE_Salmon_118970_sal4_NC_030919: hypothetical protein; NCTC9153_01272; phage(gi100018)1.18e-30Showinfo_outline
8complement(1222871..1223548)PHAGE_Entero_phi80_NC_021190: protein 40A (acetate kinase superfamily domain); NCTC9153_01273; phage(gi824479622)9.32e-100Showinfo_outline
9complement(1223996..1224391)PHAGE_Entero_mEp237_NC_019704: hypothetical protein; NCTC9153_01274; phage(gi435439303)1.65e-66Showinfo_outline
101224732..1225268PHAGE_Entero_mEp237_NC_019704: CII protein; NCTC9153_01275; phage(gi435439306)8.89e-89Showinfo_outline
111225356..1225544ATP-dependent protease ATP-binding subunit ClpX; NCTC9153_012760.0Showinfo_outline
121225559..1226467PHAGE_Shigel_Stx_NC_029120: primosomal protein I; NCTC9153_01277; phage(gi985761262)1.18e-116Showinfo_outline
131226470..1227219PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA replication protein; NCTC9153_01278; phage(gi169257280)3.29e-159Showinfo_outline
141227227..1227562PHAGE_Salmon_SPN3UB_NC_019545: putative DNA-binding protein; NCTC9153_01279; phage(gi423262429)1.80e-16Showinfo_outline
151227555..1228340PHAGE_Burkho_KS9_NC_013055: chromosome partitioning protein gp35; NCTC9153_01280; phage(gi255033718)5.14e-86Showinfo_outline
161228337..1228516PHAGE_Entero_VT2phi_272_NC_028656: hypothetical protein; NCTC9153_01281; phage(gi966197733)1.26e-20Showinfo_outline
171228534..1228788PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NCTC9153_01282; phage(gi428782346)1.75e-16Showinfo_outline
181228785..1229006PHAGE_Salmon_II_E1_NC_010495: hypothetical protein; NCTC9153_01283; phage(gi170676296)1.58e-13Showinfo_outline
191229010..1229438PHAGE_Edward_GF_2_NC_026611: hypothetical protein; NCTC9153_01284; phage(gi764162287)7.45e-07Showinfo_outline
201229868..1230326PHAGE_Escher_HK639_NC_016158: DNA pol III theta; NCTC9153_01285; phage(gi356870660)1.72e-07Showinfo_outline
211231424..1232020PHAGE_Entero_mEp237_NC_019704: hypothetical protein; NCTC9153_01286; phage(gi435439315)2.60e-119Showinfo_outline
221232223..1232525PHAGE_Erwini_phiEt88_NC_015295: hypothetical protein; NCTC9153_01287; phage(gi327198620)4.87e-45Showinfo_outline
231232522..1232890PHAGE_Escher_HK639_NC_016158: Rus Holliday junction resolvase; NCTC9153_01288; phage(gi356870665)7.67e-52Showinfo_outline
241232887..1233477PHAGE_Cronob_ENT39118_NC_019934: antitermination protein; NCTC9153_01289; phage(gi431811056)6.92e-115Showinfo_outline
251233749..1234081PHAGE_Salmon_ST64B_NC_004313: hypothetical protein; NCTC9153_01290; phage(gi23505494)5.34e-34Showinfo_outline
261235034..1235345PHAGE_Salmon_ST64T_NC_004348: holin protein; NCTC9153_01292; phage(gi24371577)8.20e-51Showinfo_outline
271235342..1235881PHAGE_Erwini_vB_EamP_S6_NC_019514: endolysin; NCTC9153_01293; phage(gi422935930)1.85e-82Showinfo_outline
281235878..1236222PHAGE_Pseudo_vB_Pae_Kakheti25_NC_017864: holin; NCTC9153_01294; phage(gi388542661)1.19e-09Showinfo_outline
291236219..1236494PHAGE_Entero_mEp390_NC_019721: hypothetical protein; NCTC9153_01295; phage(gi428782715)2.45e-36Showinfo_outline
301236439..1236639PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC9153_01296; phage(gi356870671)1.63e-18Showinfo_outline
311237453..1237821PHAGE_Entero_ST104_NC_005841: hypothetical protein; NCTC9153_01297; phage(gi46358693)5.71e-10Showinfo_outline
321238559..1239563PHAGE_Burkho_BcepMigl_NC_019917: terminase small subunit; NCTC9153_01298; phage(gi431809885)1.69e-55Showinfo_outline
331239541..1240848PHAGE_Acinet_vB_AbaS_TRS1_NC_031098: hypothetical protein; NCTC9153_01299; phage(gi100002)0.0Showinfo_outline
341240848..1242248PHAGE_Paraco_vB_PmaS_IMEP1_NC_026608: portal protein; NCTC9153_01300; phage(gi764162030)1.15e-81Showinfo_outline
351242232..1243344PHAGE_Pseudo_PS_1_NC_029066: head morphogenesis protein; NCTC9153_01301; phage(gi985757697)3.71e-111Showinfo_outline
361243429..1244214PHAGE_Xantho_Xp15_NC_007024: putative phage structural protein; NCTC9153_01302; phage(gi66392059)2.10e-19Showinfo_outline
371244225..1244512PHAGE_Acinet_Bphi_B1251_NC_019541: major capsid protein; NCTC9153_01303; phage(gi423262007)3.19e-29Showinfo_outline
381244568..1245179PHAGE_Vibrio_pYD38_B_NC_021561: major capsid protein; NCTC9153_01304; phage(gi514231589)5.17e-87Showinfo_outline
391245501..1245896PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; NCTC9153_01305; phage(gi985757703)1.95e-18Showinfo_outline
401245898..1246152PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; NCTC9153_01306; phage(gi410491538)9.80e-29Showinfo_outline
411246162..1246458Uncharacterised protein; NCTC9153_013070.0Showinfo_outline
421246430..1246813PHAGE_Pseudo_YMC11/02/R656_NC_028657: hypothetical protein; NCTC9153_01308; phage(gi966197873)6.05e-29Showinfo_outline
431246815..1247366PHAGE_Escher_HK639_NC_016158: hypothetical protein; NCTC9153_01309; phage(gi356870610)4.50e-36Showinfo_outline
441247363..1247755PHAGE_Acinet_Bphi_B1251_NC_019541: hypothetical protein; NCTC9153_01310; phage(gi423262013)1.23e-18Showinfo_outline
451247779..1248951PHAGE_Vibrio_VpKK5_NC_026610: tail subunit; NCTC9153_01311; phage(gi764162154)4.91e-13Showinfo_outline
461249005..1249487PHAGE_Pseudo_phiPSA1_NC_024365: hypothetical protein; NCTC9153_01312; phage(gi658307708)1.39e-11Showinfo_outline
471249908..1250264Uncharacterised protein; NCTC9153_013130.0Showinfo_outline
481250817..1252046PHAGE_Pseudo_MP29_NC_011613: putative tail component protein; NCTC9153_01314; phage(gi215480016)1.16e-70Showinfo_outline
491251994..1253715PHAGE_Vibrio_VpKK5_NC_026610: putative tail tape measure protein; NCTC9153_01315; phage(gi764162234)8.16e-22Showinfo_outline
501253799..1254134Uncharacterised protein; NCTC9153_013160.0Showinfo_outline
511254449..1254922PHAGE_Pseudo_PAJU2_NC_011373: hypothetical protein; NCTC9153_01317; phage(gi209552438)1.37e-46Showinfo_outline
521254909..1255391PHAGE_Pseudo_D3_NC_002484: hypothetical protein; NCTC9153_01318; phage(gi9635614)5.02e-36Showinfo_outline
531255401..1255781PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_030909: hypothetical protein; NCTC9153_01319; phage(gi100020)1.31e-21Showinfo_outline
541255778..1258846PHAGE_Pseudo_PS_1_NC_029066: tail protein; NCTC9153_01320; phage(gi985757719)1.87e-78Showinfo_outline
551258924..1259868flagellar biosynthesis, cell-distal portion of basal-body rod; NCTC9153_013210.0Showinfo_outline
561259930..1260886PHAGE_Bacill_G_NC_023719: gp353; NCTC9153_01322; phage(gi593777809)1.96e-09Showinfo_outline
571260899..1262020PHAGE_Salico_CGphi29_NC_020844: hypothetical protein; NCTC9153_01323; phage(gi472340194)9.73e-31Showinfo_outline
581268988..1269003attR0.0Showinfo_outline

Region 4, total 17 CDS

#CDS PositionBLAST HitE-ValueSequence
12925877..2925898attL0.0Showinfo_outline
22926013..2926936PROPHAGE_Escher_MG1655: CP4-57 prophage; integrase; NCTC9153_03074; phage(gi16130540)3.82e-128Showinfo_outline
3complement(2927238..2928473)Uncharacterised protein; NCTC9153_030750.0Showinfo_outline
4complement(2928436..2929512)Uncharacterised protein; NCTC9153_030760.0Showinfo_outline
5complement(2929915..2930481)PHAGE_Entero_P4_NC_001609: amber mutation-suppressing protein; NCTC9153_03077; phage(gi9627520)4.75e-74Showinfo_outline
6complement(2930499..2930744)PHAGE_Entero_186_NC_001317: B protein; NCTC9153_03078; phage(gi9634083)4.84e-18Showinfo_outline
7complement(2930741..2931478)PHAGE_Entero_P4_NC_001609: head size determination protein sid; NCTC9153_03079; phage(gi9627518)2.36e-93Showinfo_outline
82932029..2932295PHAGE_Entero_P4_NC_001609: transcriptional regulator; NCTC9153_03080; phage(gi9627517)3.76e-41Showinfo_outline
92932646..2932840PHAGE_Entero_P4_NC_001609: putative CI repressor; NCTC9153_03083; phage(gi9627516)1.98e-31Showinfo_outline
102932837..2933064Uncharacterised protein; NCTC9153_030840.0Showinfo_outline
112933061..2933381PHAGE_Entero_P4_NC_001609: hypothetical protein; NCTC9153_03085; phage(gi9627513)6.91e-66Showinfo_outline
122933393..2935303PHAGE_Entero_P4_NC_001609: DNA primase; NCTC9153_03086; phage(gi9627512)0.0Showinfo_outline
132935300..2935725PHAGE_Entero_P4_NC_001609: DNA primase; NCTC9153_03087; phage(gi9627512)7.22e-71Showinfo_outline
142935925..2936725Uncharacterised protein; NCTC9153_030880.0Showinfo_outline
152937107..2937128attR0.0Showinfo_outline
16complement(2937517..2938116)plasmid-like protein; NCTC9153_030890.0Showinfo_outline
17complement(2938241..2939125)PHAGE_Burkho_phi1026b_NC_005284: gp58; NCTC9153_03090; phage(gi38707948)1.53e-07Showinfo_outline

Region 5, total 50 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(3455929..3456942)PROPHAGE_Escher_MG1655: glycation-binding protein, predicted protease/chaperone; essential for genome maintenance; NCTC9153_03636; phage(gi16130960)0.0Showinfo_outline
23457180..3457395PHAGE_Pelagi_HTVC008M_NC_020484: 30S ribosomal protein S21; NCTC9153_03637; phage(gi460042545)5.26e-05Showinfo_outline
33457507..3459252PHAGE_Helico_phiHP33_NC_016568: DNA primase; NCTC9153_03638; phage(gi371671350)1.20e-51Showinfo_outline
43459470..3461311PHAGE_Synech_S_CBS3_NC_015465: group 2 RNA polymerase sigma factor; NCTC9153_03639; phage(gi331028036)4.43e-37Showinfo_outline
5complement(3461411..3461917)G:T/U mismatch-specific uracil/thymine DNA-glycosylase; NCTC9153_036400.0Showinfo_outline
63462042..3462117tRNA0.0Showinfo_outline
73462071..3462104attL0.0Showinfo_outline
8complement(3462254..3462472)PHAGE_Salmon_RE_2010_NC_019488: OGR regulator of late gene transcription; NCTC9153_03642; phage(gi418489727)1.17e-33Showinfo_outline
9complement(3462543..3463640)PHAGE_Salmon_RE_2010_NC_019488: gene D protein; NCTC9153_03643; phage(gi418489726)0.0Showinfo_outline
10complement(3463637..3464122)PHAGE_Salmon_RE_2010_NC_019488: tail protein; NCTC9153_03644; phage(gi418489725)3.26e-95Showinfo_outline
11complement(3464119..3466746)PHAGE_Salmon_RE_2010_NC_019488: tail tape measure protein; NCTC9153_03645; phage(gi418489724)3.94e-91Showinfo_outline
12complement(3466873..3467172)PHAGE_Salmon_RE_2010_NC_019488: tail protein E; NCTC9153_03646; phage(gi418489722)3.31e-48Showinfo_outline
13complement(3467225..3467740)PHAGE_Salmon_RE_2010_NC_019488: major tail tube protein; NCTC9153_03647; phage(gi418489721)3.13e-107Showinfo_outline
14complement(3467750..3468922)PHAGE_Salmon_RE_2010_NC_019488: major tail sheath protein; NCTC9153_03648; phage(gi418489720)0.0Showinfo_outline
15complement(3469061..3469924)PHAGE_Erwini_phiEt88_NC_015295: putative tail fiber protein; NCTC9153_03649; phage(gi327198586)7.35e-31Showinfo_outline
16complement(3470200..3470445)Uncharacterised protein; NCTC9153_036500.0Showinfo_outline
17complement(3470461..3471582)PHAGE_Salico_CGphi29_NC_020844: hypothetical protein; NCTC9153_03651; phage(gi472340194)5.58e-32Showinfo_outline
18complement(3471595..3473754)PHAGE_Bacill_G_NC_023719: gp353; NCTC9153_03652; phage(gi593777809)6.16e-09Showinfo_outline
19complement(3473757..3474431)PHAGE_Salmon_RE_2010_NC_019488: tail protein I; NCTC9153_03653; phage(gi418489712)1.50e-75Showinfo_outline
20complement(3474424..3475332)PHAGE_Salmon_RE_2010_NC_019488: baseplate assembly protein J; NCTC9153_03654; phage(gi418489711)4.76e-151Showinfo_outline
21complement(3475319..3475681)PHAGE_Salmon_RE_2010_NC_019488: baseplate wedge subunit; NCTC9153_03655; phage(gi418489710)1.48e-62Showinfo_outline
22complement(3475678..3476250)PHAGE_Salmon_RE_2010_NC_019488: baseplate assembly protein V; NCTC9153_03656; phage(gi418489709)1.76e-97Showinfo_outline
23complement(3476319..3476765)PHAGE_Salmon_RE_2010_NC_019488: tail completion protein; NCTC9153_03657; phage(gi418489707)1.02e-77Showinfo_outline
24complement(3476758..3477189)PHAGE_Salmon_RE_2010_NC_019488: tail protein; NCTC9153_03658; phage(gi418489706)6.98e-84Showinfo_outline
25complement(3477285..3477713)PHAGE_Salmon_RE_2010_NC_019488: lysozyme subunit B; NCTC9153_03659; phage(gi418489705)8.88e-60Showinfo_outline
26complement(3477710..3478093)Uncharacterised protein; NCTC9153_036600.0Showinfo_outline
27complement(3478098..3478607)PHAGE_Salmon_RE_2010_NC_019488: lysozyme; NCTC9153_03661; phage(gi418489704)1.10e-104Showinfo_outline
28complement(3478588..3478803)PHAGE_Salmon_RE_2010_NC_019488: lysis protein S; NCTC9153_03662; phage(gi418489703)8.43e-42Showinfo_outline
29complement(3479009..3479473)PHAGE_Salmon_RE_2010_NC_019488: head completion-stabilization protein; NCTC9153_03663; phage(gi418489701)7.91e-96Showinfo_outline
30complement(3479570..3480220)PHAGE_Salmon_RE_2010_NC_019488: terminase endonuclease subunit; NCTC9153_03664; phage(gi418489700)7.05e-120Showinfo_outline
31complement(3480224..3481288)PHAGE_Salmon_RE_2010_NC_019488: major capsid protein; NCTC9153_03665; phage(gi418489699)0.0Showinfo_outline
32complement(3481305..3482138)PHAGE_Salmon_RE_2010_NC_019488: capsid scaffolding protein; NCTC9153_03666; phage(gi418489698)1.19e-156Showinfo_outline
333482279..3484042PHAGE_Salmon_RE_2010_NC_019488: terminase ATPase subunit; NCTC9153_03667; phage(gi418489697)0.0Showinfo_outline
343484042..3485079PHAGE_Salmon_RE_2010_NC_019488: capsid packaging protein; NCTC9153_03668; phage(gi418489696)0.0Showinfo_outline
35complement(3485372..3486229)PHAGE_Burkho_AH2_NC_018283: hypothetical protein; NCTC9153_03669; phage(gi399529073)2.95e-142Showinfo_outline
36complement(3486249..3487379)PHAGE_Burkho_AH2_NC_018283: cytosine methyltransferase; NCTC9153_03670; phage(gi399529074)1.69e-171Showinfo_outline
37complement(3487684..3487917)PHAGE_Salmon_RE_2010_NC_019488: SOS induction modulator; NCTC9153_03671; phage(gi418489694)1.37e-39Showinfo_outline
38complement(3487931..3488119)PHAGE_Salmon_RE_2010_NC_019488: hypothetical protein; NCTC9153_03672; phage(gi418489693)4.80e-33Showinfo_outline
39complement(3488305..3490674)PHAGE_Salmon_RE_2010_NC_019488: replication protein; NCTC9153_03673; phage(gi418489692)0.0Showinfo_outline
40complement(3490692..3491348)PHAGE_Salmon_RE_2010_NC_019488: DNA adenine methyltransferase; NCTC9153_03674; phage(gi418489691)3.26e-60Showinfo_outline
41complement(3491577..3491804)PHAGE_Salmon_RE_2010_NC_019488: zinc-finger containing protein; NCTC9153_03675; phage(gi418489690)2.21e-42Showinfo_outline
42complement(3491804..3492037)PHAGE_Salmon_RE_2010_NC_019488: hypothetical protein; NCTC9153_03676; phage(gi418489689)2.82e-28Showinfo_outline
43complement(3492105..3492446)PHAGE_Salmon_RE_2010_NC_019488: hypothetical protein; NCTC9153_03677; phage(gi418489688)1.04e-65Showinfo_outline
44complement(3492410..3492610)PHAGE_Salmon_RE_2010_NC_019488: cell division blocking protein; NCTC9153_03678; phage(gi418489687)1.84e-33Showinfo_outline
45complement(3492618..3493127)PHAGE_Salmon_RE_2010_NC_019488: regulatory protein; NCTC9153_03679; phage(gi418489686)1.57e-103Showinfo_outline
46complement(3493162..3493398)PHAGE_Haemop_HP2_NC_003315: orf2(S)cox; NCTC9153_03680; phage(gi17981819)1.51e-06Showinfo_outline
473493499..3494113PHAGE_Salmon_Fels_2_NC_010463: P2 CI-like protein; NCTC9153_03681; phage(gi169936063)8.07e-46Showinfo_outline
483494116..3494367Uncharacterised protein; NCTC9153_036820.0Showinfo_outline
493494367..3495452PHAGE_Salmon_RE_2010_NC_019488: integrase; NCTC9153_03683; phage(gi418489683)2.05e-134Showinfo_outline
503495492..3495525attR0.0Showinfo_outline

Region 6, total 26 CDS

#CDS PositionBLAST HitE-ValueSequence
14923873..4923886attL0.0Showinfo_outline
24924032..4924814PHAGE_Mycoba_Squirty_NC_026588: non-functional integrase; NCTC9153_05177; phage(gi764159894)5.35e-07Showinfo_outline
34925449..4926039membrane protein; NCTC9153_051780.0Showinfo_outline
4complement(4926352..4927320)PHAGE_Entero_HK022_NC_002166: IS903 transposase; NCTC9153_05179; phage(gi9634149)0.0Showinfo_outline
5complement(4928333..4928902)Uncharacterised protein; NCTC9153_051800.0Showinfo_outline
64929498..4929941Uncharacterised protein; NCTC9153_051810.0Showinfo_outline
74929962..4930750Uncharacterised protein; NCTC9153_051820.0Showinfo_outline
84930764..4931129TraI; NCTC9153_051830.0Showinfo_outline
94931131..4931568PHAGE_Entero_HK022_NC_002166: IS903 transposase; NCTC9153_05184; phage(gi9634149)2.02e-78Showinfo_outline
10complement(4931591..4931848)PHAGE_Stx2_c_1717_NC_011357: transposase; NCTC9153_05185; phage(gi209447152)2.14e-30Showinfo_outline
11complement(4933204..4934172)PHAGE_Entero_HK022_NC_002166: IS903 transposase; NCTC9153_05186; phage(gi9634149)0.0Showinfo_outline
12complement(4934319..4934738)PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; NCTC9153_05187; phage(gi157166006)5.98e-05Showinfo_outline
13complement(4934735..4935046)PHAGE_Riemer_RAP44_NC_019490: DUF2136 superfamily protein; NCTC9153_05188; phage(gi418489860)1.08e-11Showinfo_outline
14complement(4935179..4935739)PROPHAGE_Escher_CFT073: insertion element IS2 transposase InsD; NCTC9153_05189; phage(gi26249446)8.76e-93Showinfo_outline
154935802..4936140PHAGE_Stx2_c_1717_NC_011357: truncated transposase; NCTC9153_05190; phage(gi209447151)4.60e-63Showinfo_outline
164936137..4936484PHAGE_Stx2_c_1717_NC_011357: transposase; NCTC9153_05191; phage(gi209447152)8.61e-75Showinfo_outline
174936533..4937324PHAGE_Stx2_c_1717_NC_011357: transposase; NCTC9153_05192; phage(gi209447153)1.95e-158Showinfo_outline
184937391..4938314PHAGE_Entero_HK022_NC_002166: IS903 transposase; NCTC9153_05193; phage(gi9634149)0.0Showinfo_outline
19complement(4938684..4938938)PROPHAGE_Xantho_33913: IS1477 transposase; NCTC9153_05194; phage(gi77747809)8.33e-26Showinfo_outline
20complement(4940095..4940562)putative transcriptional regulator; NCTC9153_051960.0Showinfo_outline
214940713..4941534PHAGE_Mycoba_Piro94_NC_028794: hydrolase; NCTC9153_05197; phage(gi971743936)1.79e-14Showinfo_outline
224941594..4942283acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; NCTC9153_051980.0Showinfo_outline
234942794..4943198PHAGE_Stx2_c_1717_NC_011357: truncated transposase; NCTC9153_05199; phage(gi209447151)6.48e-42Showinfo_outline
244943195..4943542PHAGE_Stx2_c_1717_NC_011357: transposase; NCTC9153_05200; phage(gi209447152)1.81e-76Showinfo_outline
254944146..4944286PHAGE_Entero_HK022_NC_002166: IS903 transposase; NCTC9153_05201; phage(gi9634149)5.12e-23Showinfo_outline
264958326..4958339attR0.0Showinfo_outline

Region 7, total 25 CDS

#CDS PositionBLAST HitE-ValueSequence
14949328..4949341attL0.0Showinfo_outline
24957517..4958653PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; NCTC9153_05216; phage(gi100071)4.77e-23Showinfo_outline
3complement(4958719..4959036)Uncharacterised protein; NCTC9153_052170.0Showinfo_outline
44959524..4960492PHAGE_Salmon_SJ46_NC_031129: sigma factor for late transcription; NCTC9153_05218; phage(gi100065)0.0Showinfo_outline
54960531..4960549attL0.0Showinfo_outline
6complement(4960574..4961332)Uncharacterised protein; NCTC9153_052190.0Showinfo_outline
7complement(4961329..4962288)putative DNA replication terminus site-binding protein; NCTC9153_052200.0Showinfo_outline
8complement(4962331..4962738)Uncharacterised protein; NCTC9153_052210.0Showinfo_outline
9complement(4962748..4963191)Uncharacterised protein; NCTC9153_052220.0Showinfo_outline
10complement(4963212..4963868)PROPHAGE_Escher_MG1655: IS2 transposase TnpB; NCTC9153_05223; phage(gi16132094)1.91e-140Showinfo_outline
11complement(4964075..4964212)PHAGE_Pseudo_MD8_NC_031091: hypothetical protein; NCTC9153_05224; phage(gi100010)7.85e-17Showinfo_outline
124964456..4965148transposase-like protein; NCTC9153_052250.0Showinfo_outline
13complement(4965619..4967211)PHAGE_Stx2_c_1717_NC_011357: transposase; NCTC9153_05226; phage(gi209447153)0.0Showinfo_outline
14complement(4967242..4967592)PHAGE_Stx2_c_1717_NC_011357: transposase; NCTC9153_05227; phage(gi209447152)1.52e-49Showinfo_outline
15complement(4967589..4968029)PHAGE_Stx2_c_1717_NC_011357: truncated transposase; NCTC9153_05228; phage(gi209447151)1.54e-12Showinfo_outline
164968262..4968408PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; NCTC9153_05229; phage(gi431811050)2.62e-09Showinfo_outline
17complement(4970209..4971180)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; NCTC9153_05230; phage(gi100010)4.99e-11Showinfo_outline
18complement(4971180..4972346)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; NCTC9153_05231; phage(gi100009)7.11e-13Showinfo_outline
194973075..4974085PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; NCTC9153_05232; phage(gi100007)8.17e-74Showinfo_outline
20complement(4974813..4975163)site-specific recombinase, phage integrase family; NCTC9153_052330.0Showinfo_outline
21complement(4975148..4975516)site-specific recombinase, phage integrase family; NCTC9153_052340.0Showinfo_outline
22complement(4976376..4976912)putative plasmid transfer protein; NCTC9153_052350.0Showinfo_outline
23complement(4977065..4977814)PHAGE_Salmon_SJ46_NC_031129: sigma factor for late transcription; NCTC9153_05236; phage(gi100065)0.0Showinfo_outline
244978049..4978067attR0.0Showinfo_outline
254987488..4987501attR0.0Showinfo_outline

Region 8, total 16 CDS

#CDS PositionBLAST HitE-ValueSequence
15343035..5343046attL0.0Showinfo_outline
25343087..5344352PHAGE_Entero_P4_NC_001609: integrase; NCTC9153_05600; phage(gi9627511)0.0Showinfo_outline
35344446..5345240PHAGE_Entero_P4_NC_001609: hypothetical protein; NCTC9153_05601; phage(gi9627510)2.55e-98Showinfo_outline
4complement(5345266..5346330)PHAGE_Entero_P4_NC_001609: hypothetical protein; NCTC9153_05602; phage(gi9627509)0.0Showinfo_outline
5complement(5347411..5347977)PHAGE_Entero_P4_NC_001609: amber mutation-suppressing protein; NCTC9153_05603; phage(gi9627520)1.11e-74Showinfo_outline
6complement(5347995..5348240)PHAGE_Entero_186_NC_001317: B protein; NCTC9153_05604; phage(gi9634083)1.06e-17Showinfo_outline
7complement(5348237..5348974)PHAGE_Entero_P4_NC_001609: head size determination protein sid; NCTC9153_05605; phage(gi9627518)1.23e-94Showinfo_outline
85349516..5349782PHAGE_Entero_P4_NC_001609: transcriptional regulator; NCTC9153_05606; phage(gi9627517)3.20e-42Showinfo_outline
95350133..5350327PHAGE_Entero_P4_NC_001609: putative CI repressor; NCTC9153_05609; phage(gi9627516)1.30e-30Showinfo_outline
105350324..5350551Uncharacterised protein; NCTC9153_056100.0Showinfo_outline
115350548..5350868PHAGE_Entero_P4_NC_001609: hypothetical protein; NCTC9153_05611; phage(gi9627513)6.91e-66Showinfo_outline
125350880..5353213PHAGE_Entero_P4_NC_001609: DNA primase; NCTC9153_05612; phage(gi9627512)0.0Showinfo_outline
135354083..5354403toxin-antitoxin system protein; NCTC9153_056130.0Showinfo_outline
145354387..5354935putative GCN5-related N-acetyltransferase; NCTC9153_056140.0Showinfo_outline
155355561..5355572attR0.0Showinfo_outline
165355843..5356343PROPHAGE_Escher_Sakai: putative integrase; NCTC9153_05615; phage(gi15834507)6.55e-70Showinfo_outline
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Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 5394660 bps
Phages: 8
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

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