Submission Results

Sequence Name: Not Available

GenBank Accession Number: VDDR01000020.1

GenInfo (GI) Number: 0000000000

Download Results: VDDR01000020.1.PHASTER.zip

gi|00000000|ref|VDDR01000020.1| Bacillus cereus strain A8 NODE_20_length_69159_cov_43.047031, 69159, gc%: 34.50%

Download summary as .txt file: summary.txt file_download

Total: 2 prophage regions have been identified, of which 1 regions are intact, 1 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
111.9Kbincomplete20171-11936 info_outlinePHAGE_Bacill_1_NC_009737(4)35.64%Show info_outline
219.6Kbintact1202249549-69159 info_outlinePHAGE_Bacill_phi4J1_NC_029008(15)36.95%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|VDDR01000020.1| Bacillus cereus strain A8 NODE_20_length_69159_cov_43.047031, 69159, gc%: 34.50%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 17 CDS

#CDS PositionBLAST HitE-ValueSequence
11..603PHAGE_Bacill_phiCM3_NC_023599: minor structural protein; FHG65_26360; phage(gi589892727)1.36e-84Showinfo_outline
2643..1068PHAGE_Bacill_phIS3501_NC_019502: holin; FHG65_26365; phage(gi422934342)6.35e-89Showinfo_outline
31068..1886PHAGE_Bacill_phBC6A52_NC_004821: N-acetylmuramoyl-L-alanine amidase; FHG65_26370; phage(gi31415865)0.0Showinfo_outline
41990..2280hypothetical protein; FHG65_263750.0Showinfo_outline
5complement(2366..2707)PHAGE_Staphy_phiRS7_NC_022914: YolD-like protein; FHG65_26380; phage(gi560185985)2.42e-15Showinfo_outline
6complement(2704..3969)PHAGE_Bacill_SPbeta_NC_001884: IMPB/MUCB/SAMB family protein; FHG65_26385; phage(gi9630142)5.88e-136Showinfo_outline
7complement(4080..4304)PHAGE_Bacill_1_NC_009737: putative transcriptional regulator; FHG65_26390; phage(gi158348422)1.55e-14Showinfo_outline
84617..5915PHAGE_Bacill_1_NC_009737: FtsK/SpoIIIE family protein; FHG65_26395; phage(gi158348423)2.51e-137Showinfo_outline
95854..6429PHAGE_Bacill_1_NC_009737: hypothetical protein; FHG65_26400; phage(gi158348415)6.91e-91Showinfo_outline
106449..6937PHAGE_Bacill_1_NC_009737: hypothetical protein; FHG65_26405; phage(gi155042954)2.37e-23Showinfo_outline
11complement(6973..8328)hypothetical protein; FHG65_264100.0Showinfo_outline
128489..9079PHAGE_Bacill_Deep_Purple_NC_048667: hypothetical protein; FHG65_26415; phage(gi100007)7.33e-21Showinfo_outline
139263..9616PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; FHG65_26420; phage(gi31415841)4.20e-11Showinfo_outline
149780..10091PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; FHG65_26425; phage(gi31415841)1.79e-21Showinfo_outline
15complement(10189..10539)hypothetical protein; FHG65_264300.0Showinfo_outline
16complement(10739..11113)hypothetical protein; FHG65_264350.0Showinfo_outline
17complement(11115..11936)PHAGE_Lactob_Lb_NC_047983: minor tail protein; FHG65_26440; phage(gi100055)1.16e-72Showinfo_outline

Region 2, total 22 CDS

#CDS PositionBLAST HitE-ValueSequence
149549..50124PHAGE_Burkho_KS14_NC_015273: gp6; FHG65_26700; phage(gi327198275)3.16e-38Showinfo_outline
2complement(50316..50537)hypothetical protein; FHG65_267050.0Showinfo_outline
3complement(50556..50753)hypothetical protein; FHG65_267100.0Showinfo_outline
450979..51191PHAGE_Bacill_PfEFR_5_NC_031055: capsid decoration protein; FHG65_26715; phage(gi100066)1.92e-37Showinfo_outline
551225..52139PHAGE_Staphy_SpaA1_NC_018277: phage terminase, small subunit; FHG65_26720; phage(gi399498865)0.0Showinfo_outline
652129..53403PHAGE_Staphy_SpaA1_NC_018277: phage terminase, large subunit; FHG65_26725; phage(gi399498866)0.0Showinfo_outline
753416..54840PHAGE_Staphy_SpaA1_NC_018277: phage portal protein, SPP1; FHG65_26730; phage(gi399498867)0.0Showinfo_outline
854914..55681PHAGE_Staphy_SpaA1_NC_018277: phage minor head protein; FHG65_26735; phage(gi399498868)0.0Showinfo_outline
955756..56487PHAGE_Staphy_SpaA1_NC_018277: phage scaffold protein; FHG65_26740; phage(gi399498870)2.17e-104Showinfo_outline
1056605..57450PHAGE_Staphy_SpaA1_NC_018277: phage coat protein gp6; FHG65_26745; phage(gi399498871)0.0Showinfo_outline
1157494..57805PHAGE_Staphy_SpaA1_NC_018277: phage related protein gp15; FHG65_26750; phage(gi399498872)1.21e-55Showinfo_outline
1257802..58146PHAGE_Staphy_SpaA1_NC_018277: phage head-tail adaptor; FHG65_26755; phage(gi399498873)7.11e-71Showinfo_outline
1358121..58528PHAGE_Staphy_SpaA1_NC_018277: phage protein, HK97 gp10; FHG65_26760; phage(gi399498874)1.55e-89Showinfo_outline
1458534..58896PHAGE_Staphy_SpaA1_NC_018277: phage structural protein; FHG65_26765; phage(gi399498875)2.10e-76Showinfo_outline
1558911..59504PHAGE_Staphy_SpaA1_NC_018277: phage related protein; FHG65_26770; phage(gi399498876)3.95e-137Showinfo_outline
1659551..59979PHAGE_Staphy_SpaA1_NC_018277: phage related protein; FHG65_26775; phage(gi399498877)1.89e-95Showinfo_outline
1760084..60290PHAGE_Staphy_SpaA1_NC_018277: phage related protein; FHG65_26780; phage(gi399498878)5.74e-42Showinfo_outline
1860291..62990PHAGE_Staphy_SpaA1_NC_018277: phage tail tape measure protein; FHG65_26785; phage(gi399498879)0.0Showinfo_outline
1963201..64220PHAGE_Lactoc_WRP3_NC_027341: hypothetical protein; FHG65_26790; phage(gi849250941)6.46e-41Showinfo_outline
2064431..64667PHAGE_Staphy_SpaA1_NC_018277: phage tail tape measure protein; FHG65_26795; phage(gi399498879)3.41e-40Showinfo_outline
2164680..66161PHAGE_Staphy_SpaA1_NC_018277: phage tail fiber protein; FHG65_26800; phage(gi399498880)0.0Showinfo_outline
2266158..69159PHAGE_Bacill_vB_BceS_MY192_NC_048633: tail assembly protein; FHG65_26805; phage(gi100053)0.0Showinfo_outline
Bacillus cereus strain A8 NODE_20_length_69159_cov_43.047031
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 69159 bps
Phages: 2
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download