Submission Results

Sequence Name: Not Available

GenBank Accession Number: VEPQ01000006.1

GenInfo (GI) Number: 0000000000

Download Results: VEPQ01000006.1.PHASTER.zip

gi|00000000|ref|VEPQ01000006.1| Bacillus cereus strain A42 NODE_6_length_285875_cov_65.478366, 285875, gc%: 33.43%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
140.8Kbincomplete60511-40841 info_outlinePHAGE_Bacill_PfEFR_4_NC_048641(22)34.50%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|VEPQ01000006.1| Bacillus cereus strain A42 NODE_6_length_285875_cov_65.478366, 285875, gc%: 33.43%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 55 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(1..3425)PHAGE_Bacill_vB_BceS_MY192_NC_048633: tail assembly protein; FHR06_18520; phage(gi100053)0.0Showinfo_outline
2complement(3422..4885)PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; FHR06_18525; phage(gi100018)0.0Showinfo_outline
3complement(4920..9935)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FHR06_18530; phage(gi100017)0.0Showinfo_outline
4complement(9951..10091)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FHR06_18535; phage(gi100016)1.62e-24Showinfo_outline
5complement(10109..10504)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FHR06_18540; phage(gi100015)7.51e-87Showinfo_outline
6complement(10564..11151)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FHR06_18545; phage(gi100014)5.35e-100Showinfo_outline
7complement(11164..11523)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FHR06_18550; phage(gi100013)2.40e-81Showinfo_outline
8complement(11520..11957)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FHR06_18555; phage(gi100012)2.72e-100Showinfo_outline
9complement(11945..12292)PHAGE_Bacill_vB_BceS_MY192_NC_048633: putative transcriptional regulator; FHR06_18560; phage(gi100045)6.64e-80Showinfo_outline
10complement(12279..12554)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FHR06_18565; phage(gi100010)2.35e-57Showinfo_outline
11complement(12563..12853)fibronectin type III domain-containing protein; FHR06_185700.0Showinfo_outline
12complement(12840..14027)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FHR06_18575; phage(gi100009)0.0Showinfo_outline
13complement(14024..14746)PHAGE_Paenib_Pagassa_NC_048690: hypothetical protein; FHR06_18580; phage(gi100004)2.60e-124Showinfo_outline
14complement(14775..15989)PHAGE_Bacill_vB_BceS_MY192_NC_048633: DNA adenine methyltransferase; FHR06_18585; phage(gi100041)0.0Showinfo_outline
15complement(16005..17777)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FHR06_18590; phage(gi100006)0.0Showinfo_outline
16complement(17758..18138)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FHR06_18595; phage(gi100005)3.52e-87Showinfo_outline
17complement(18300..18515)PHAGE_Bacill_PfEFR_4_NC_048641: capsid maturation protease; FHR06_18600; phage(gi100067)4.61e-45Showinfo_outline
1818595..18607attL0.0Showinfo_outline
19complement(18661..18933)hypothetical protein; FHR06_186050.0Showinfo_outline
20complement(18947..19354)PHAGE_Bacill_WBeta_NC_007734: hypothetical protein; FHR06_18610; phage(gi85701427)2.03e-60Showinfo_outline
21complement(19378..19638)PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; FHR06_18615; phage(gi100059)8.71e-25Showinfo_outline
22complement(20064..20552)hypothetical protein; FHR06_186200.0Showinfo_outline
23complement(20905..21447)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FHR06_18625; phage(gi100061)2.12e-129Showinfo_outline
24complement(21444..21917)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FHR06_18630; phage(gi100060)1.35e-107Showinfo_outline
2522421..23392glycosyltransferase; FHR06_186350.0Showinfo_outline
2624233..24245attL0.0Showinfo_outline
2724340..25128sulfotransferase family protein; FHR06_186400.0Showinfo_outline
2825352..26140glycosyltransferase family 2 protein; FHR06_186450.0Showinfo_outline
29complement(26525..26728)PHAGE_Paenib_Likha_NC_048693: hypothetical protein; FHR06_18650; phage(gi100060)6.06e-20Showinfo_outline
30complement(27604..28113)PHAGE_Aeriba_AP45_NC_048651: hypothetical protein; FHR06_18655; phage(gi100019)5.17e-35Showinfo_outline
31complement(28133..28384)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FHR06_18660; phage(gi100042)1.41e-22Showinfo_outline
32complement(28411..28578)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FHR06_18665; phage(gi100040)4.44e-18Showinfo_outline
33complement(28597..28956)PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; FHR06_18670; phage(gi100025)1.48e-41Showinfo_outline
34complement(28949..29227)PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; FHR06_18675; phage(gi100024)1.71e-18Showinfo_outline
35complement(29244..29438)PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; FHR06_18680; phage(gi100012)7.04e-32Showinfo_outline
3629519..29746PHAGE_Staphy_AJ_2017_NC_048644: tail assembly protein; FHR06_18685; phage(gi100053)2.17e-15Showinfo_outline
37complement(29743..29946)hypothetical protein; FHR06_186900.0Showinfo_outline
38complement(29962..30765)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FHR06_18695; phage(gi100038)0.0Showinfo_outline
39complement(30734..31480)PHAGE_Bacill_PfEFR_4_NC_048641: putative phosphoesterase; FHR06_18700; phage(gi100037)1.57e-159Showinfo_outline
40complement(31855..32121)PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; FHR06_18705; phage(gi100007)8.95e-51Showinfo_outline
41complement(32171..32242)Rha family transcriptional regulator; FHR06_187100.0Showinfo_outline
42complement(32327..32530)PHAGE_Bacill_PfEFR_4_NC_048641: u-spanin; FHR06_18715; phage(gi100032)2.76e-15Showinfo_outline
4332702..33061PHAGE_Paenib_Likha_NC_048693: u-spanin; FHR06_18720; phage(gi100032)4.43e-11Showinfo_outline
44complement(33580..34773)PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; FHR06_18725; phage(gi100016)1.61e-32Showinfo_outline
45complement(35277..35459)hypothetical protein; FHR06_187300.0Showinfo_outline
4635664..36773PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; FHR06_18735; phage(gi100002)0.0Showinfo_outline
47complement(36812..37513)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; FHR06_18740; phage(gi31415820)1.45e-161Showinfo_outline
48complement(38188..38367)PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; FHR06_18745; phage(gi31415809)3.94e-21Showinfo_outline
4938629..38868PHAGE_Clostr_c_st_NC_007581: putative restriction endonuclase; FHR06_18750; phage(gi80159877)3.21e-10Showinfo_outline
50complement(38828..39289)PHAGE_Lactob_3_521_NC_048753: DNA helicase; FHR06_18755; phage(gi100044)3.13e-24Showinfo_outline
51complement(39691..40008)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; FHR06_18760; phage(gi31415818)3.75e-23Showinfo_outline
5240184..40196attR0.0Showinfo_outline
53complement(40227..40481)hypothetical protein; FHR06_187650.0Showinfo_outline
54complement(40563..40826)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; FHR06_18770; phage(gi31415817)5.61e-58Showinfo_outline
5540841..40853attR0.0Showinfo_outline
Bacillus cereus strain A42 NODE_6_length_285875_cov_65.478366
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 285875 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download