Submission Results

Sequence Name: Not Available

GenBank Accession Number: VEPT01000023.1

GenInfo (GI) Number: 0000000000

Download Results: VEPT01000023.1.PHASTER.zip

gi|00000000|ref|VEPT01000023.1| Bacillus cereus strain A31 NODE_23_length_62499_cov_58.872128, 62499, gc%: 34.94%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
149.1Kbintact150635033-54181 info_outlinePHAGE_Staphy_SpaA1_NC_018277(16)35.59%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|VEPT01000023.1| Bacillus cereus strain A31 NODE_23_length_62499_cov_58.872128, 62499, gc%: 34.94%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 63 CDS

#CDS PositionBLAST HitE-ValueSequence
15033..5854PHAGE_Lactob_Lb_NC_047983: minor tail protein; FHY65_24500; phage(gi100055)1.16e-72Showinfo_outline
25856..6230hypothetical protein; FHY65_245050.0Showinfo_outline
36430..6780hypothetical protein; FHY65_245100.0Showinfo_outline
4complement(6878..7189)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; FHY65_24515; phage(gi31415841)1.79e-21Showinfo_outline
5complement(7353..7706)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; FHY65_24520; phage(gi31415841)4.20e-11Showinfo_outline
6complement(7890..8480)PHAGE_Bacill_Deep_Purple_NC_048667: hypothetical protein; FHY65_24525; phage(gi100007)9.21e-22Showinfo_outline
7complement(8611..10098)DUF2075 domain-containing protein; FHY65_245300.0Showinfo_outline
8complement(10280..10768)PHAGE_Bacill_1_NC_009737: hypothetical protein; FHY65_24535; phage(gi155042954)1.33e-23Showinfo_outline
9complement(10788..11363)PHAGE_Bacill_vB_BhaS_171_NC_030904: holin; FHY65_24540; phage(gi100034)8.89e-49Showinfo_outline
10complement(11302..12600)PHAGE_Bacill_1_NC_009737: FtsK/SpoIIIE family protein; FHY65_24545; phage(gi158348423)3.41e-138Showinfo_outline
1112900..13121PHAGE_Staphy_SpaA1_NC_018277: XRE family transcriptional regulator; FHY65_24550; phage(gi399498887)8.40e-36Showinfo_outline
1213227..13511hypothetical protein; FHY65_245550.0Showinfo_outline
1313641..14906PHAGE_Bacill_SPbeta_NC_001884: IMPB/MUCB/SAMB family protein; FHY65_24560; phage(gi9630142)7.06e-139Showinfo_outline
1414903..15244PHAGE_Staphy_phiRS7_NC_022914: YolD-like protein; FHY65_24565; phage(gi560185985)5.14e-14Showinfo_outline
1515453..15953protein phosphatase 2C; FHY65_245700.0Showinfo_outline
16complement(16023..16958)PHAGE_Bacill_Waukesha92_NC_025424: endolysin; FHY65_24575; phage(gi712912403)0.0Showinfo_outline
17complement(16958..17383)PHAGE_Bacill_phi4J1_NC_029008: holin; FHY65_24580; phage(gi971821606)2.96e-89Showinfo_outline
18complement(17423..21457)PHAGE_Bacill_vB_BceS_MY192_NC_048633: tail assembly protein; FHY65_24585; phage(gi100053)0.0Showinfo_outline
19complement(21454..22935)PHAGE_Staphy_SpaA1_NC_018277: phage tail fiber protein; FHY65_24590; phage(gi399498880)0.0Showinfo_outline
20complement(22948..25548)PHAGE_Staphy_SpaA1_NC_018277: phage tail tape measure protein; FHY65_24595; phage(gi399498879)0.0Showinfo_outline
21complement(25549..25812)PHAGE_Staphy_SpaA1_NC_018277: phage related protein; FHY65_24600; phage(gi399498878)3.66e-37Showinfo_outline
22complement(25860..26222)PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; FHY65_24605; phage(gi100016)2.07e-07Showinfo_outline
23complement(26269..26862)PHAGE_Staphy_SpaA1_NC_018277: phage related protein; FHY65_24610; phage(gi399498876)5.80e-139Showinfo_outline
24complement(26877..27239)PHAGE_Staphy_SpaA1_NC_018277: phage structural protein; FHY65_24615; phage(gi399498875)1.80e-74Showinfo_outline
25complement(27245..27652)PHAGE_Staphy_SpaA1_NC_018277: phage protein, HK97 gp10; FHY65_24620; phage(gi399498874)2.98e-90Showinfo_outline
26complement(27627..27971)PHAGE_Staphy_SpaA1_NC_018277: phage head-tail adaptor; FHY65_24625; phage(gi399498873)1.37e-72Showinfo_outline
27complement(27968..28279)PHAGE_Staphy_SpaA1_NC_018277: phage related protein gp15; FHY65_24630; phage(gi399498872)1.21e-55Showinfo_outline
28complement(28323..29168)PHAGE_Staphy_SpaA1_NC_018277: phage coat protein gp6; FHY65_24635; phage(gi399498871)0.0Showinfo_outline
29complement(29286..30017)PHAGE_Staphy_SpaA1_NC_018277: phage scaffold protein; FHY65_24640; phage(gi399498870)2.16e-105Showinfo_outline
30complement(30090..30857)PHAGE_Staphy_SpaA1_NC_018277: phage minor head protein; FHY65_24645; phage(gi399498868)0.0Showinfo_outline
31complement(30931..32355)PHAGE_Staphy_SpaA1_NC_018277: phage portal protein, SPP1; FHY65_24650; phage(gi399498867)0.0Showinfo_outline
32complement(32368..33642)PHAGE_Staphy_SpaA1_NC_018277: phage terminase, large subunit; FHY65_24655; phage(gi399498866)0.0Showinfo_outline
33complement(33632..34546)PHAGE_Staphy_SpaA1_NC_018277: phage terminase, small subunit; FHY65_24660; phage(gi399498865)0.0Showinfo_outline
34complement(34581..34793)PHAGE_Bacill_PfEFR_5_NC_031055: capsid decoration protein; FHY65_24665; phage(gi100066)4.11e-38Showinfo_outline
3535019..35216hypothetical protein; FHY65_246700.0Showinfo_outline
3635235..35456hypothetical protein; FHY65_246750.0Showinfo_outline
37complement(35609..35842)hypothetical protein; FHY65_246800.0Showinfo_outline
38complement(35994..36569)PHAGE_Burkho_KS14_NC_015273: gp6; FHY65_24685; phage(gi327198275)5.31e-38Showinfo_outline
39complement(36725..36964)hypothetical protein; FHY65_246900.0Showinfo_outline
40complement(37182..37373)hypothetical protein; FHY65_246950.0Showinfo_outline
41complement(37756..38175)PHAGE_Geobac_E3_NC_029073: PemK-like protein; FHY65_24700; phage(gi985758376)6.96e-09Showinfo_outline
42complement(38424..38663)hypothetical protein; FHY65_247050.0Showinfo_outline
4339822..40160hypothetical protein; FHY65_247100.0Showinfo_outline
44complement(40220..40606)PHAGE_Bacill_phi105_NC_004167: hypothetical protein; FHY65_24715; phage(gi22855040)1.99e-28Showinfo_outline
45complement(40745..41374)PHAGE_Paenib_PG1_NC_021558: hypothetical protein; FHY65_24720; phage(gi514231228)2.18e-59Showinfo_outline
4641486..41674PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; FHY65_24725; phage(gi31415836)1.65e-14Showinfo_outline
47complement(42830..43093)PHAGE_Staphy_SpaA1_NC_018277: phage related protein; FHY65_24730; phage(gi399498905)2.42e-32Showinfo_outline
48complement(43090..43335)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FHY65_24735; phage(gi100042)1.59e-43Showinfo_outline
49complement(43292..43555)PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; FHY65_24740; phage(gi197261521)7.75e-21Showinfo_outline
50complement(43571..44329)PHAGE_Bacill_Pony_NC_022770: replication initiator protein; FHY65_24745; phage(gi568191570)3.13e-49Showinfo_outline
51complement(44313..45434)PHAGE_Staphy_3MRA_NC_028917: replication initiation; FHY65_24750; phage(gi971755503)1.10e-49Showinfo_outline
52complement(45435..45656)hypothetical protein; FHY65_247550.0Showinfo_outline
53complement(45848..46480)PHAGE_Bacill_TP21_L_NC_011645: gp28; FHY65_24760; phage(gi216905993)7.50e-40Showinfo_outline
54complement(46676..46876)PHAGE_Bacill_BM5_NC_029069: hypothetical protein; FHY65_24765; phage(gi985757872)9.26e-07Showinfo_outline
55complement(47566..48342)PHAGE_Clostr_phiCDHM19_NC_028996: putative regulatory protein; FHY65_24770; phage(gi971763920)7.72e-51Showinfo_outline
56complement(48382..48603)PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; FHY65_24775; phage(gi100006)9.51e-10Showinfo_outline
5748735..49085PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; FHY65_24780; phage(gi100005)5.07e-31Showinfo_outline
58complement(49396..49545)PHAGE_Bacill_BMBtpLA_NC_028748: hypothetical protein; FHY65_24785; phage(gi971482515)7.36e-05Showinfo_outline
59complement(49585..50733)PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; FHY65_24790; phage(gi712912391)4.09e-60Showinfo_outline
60complement(51192..51575)hypothetical protein; FHY65_247950.0Showinfo_outline
61complement(51753..51860)thymidylate synthase; FHY65_248000.0Showinfo_outline
6252562..53230PHAGE_Lactoc_TP901_1_NC_002747: ORF55; FHY65_24805; phage(gi13786586)1.24e-13Showinfo_outline
6353663..54181PHAGE_Bacill_250_NC_029024: hypothetical protein; FHY65_24810; phage(gi971766642)8.25e-62Showinfo_outline
Bacillus cereus strain A31 NODE_23_length_62499_cov_58.872128
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 62499 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download