Submission Results

Sequence Name: Not Available

GenBank Accession Number: VEPV01000006.1

GenInfo (GI) Number: 0000000000

Download Results: VEPV01000006.1.PHASTER.zip

gi|00000000|ref|VEPV01000006.1| Bacillus tropicus strain SN1 NODE_6_length_268991_cov_51.276828, 268991, gc%: 33.04%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
146.7Kbintact15048192215-238966 info_outlinePHAGE_Bacill_phIS3501_NC_019502(18)34.33%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|VEPV01000006.1| Bacillus tropicus strain SN1 NODE_6_length_268991_cov_51.276828, 268991, gc%: 33.04%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 52 CDS

#CDS PositionBLAST HitE-ValueSequence
1192215..192242attL0.0Showinfo_outline
2192241..192360PHAGE_Bacill_WBeta_NC_007734: phage lysin N-acetylmuramoyl-L-alanine amidase; FHY71_18220; phage(gi85701396)2.68e-06Showinfo_outline
3192600..192899PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; FHY71_18225; phage(gi31415818)4.57e-19Showinfo_outline
4193428..193913PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; FHY71_18230; phage(gi31415819)1.69e-94Showinfo_outline
5194217..194888PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; FHY71_18235; phage(gi31415820)4.04e-142Showinfo_outline
6complement(194957..196066)PROPHAGE_Mesorh_MAFF303099: bacteriophage integrase; FHY71_18240; phage(gi13470699)9.54e-68Showinfo_outline
7196371..197237PHAGE_Bacill_phBC6A52_NC_004821: Collagen triple helix repeat protein; FHY71_18245; phage(gi31415834)1.43e-19Showinfo_outline
8197856..198953PHAGE_Bacill_phBC6A51_NC_004820: Prophage helix-turn-helix protein; FHY71_18250; phage(gi31415742)4.41e-143Showinfo_outline
9complement(199396..199734)PHAGE_Bacill_phIS3501_NC_019502: transcriptional regulator XRE family protein; FHY71_18255; phage(gi422934302)2.01e-30Showinfo_outline
10199903..200112PHAGE_Bacill_PfEFR_4_NC_048641: u-spanin; FHY71_18260; phage(gi100032)4.71e-14Showinfo_outline
11200234..200500PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; FHY71_18265; phage(gi100007)6.59e-48Showinfo_outline
12200859..201578PHAGE_Bacill_PfEFR_4_NC_048641: putative phosphoesterase; FHY71_18270; phage(gi100037)2.15e-135Showinfo_outline
13201547..202350PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FHY71_18275; phage(gi100038)0.0Showinfo_outline
14202366..202560PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; FHY71_18280; phage(gi100012)3.05e-35Showinfo_outline
15202585..202758PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FHY71_18285; phage(gi100040)2.22e-32Showinfo_outline
16202773..203027PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; FHY71_18290; phage(gi100014)4.05e-53Showinfo_outline
17203040..203459PHAGE_Bacill_250_NC_029024: hypothetical protein; FHY71_18295; phage(gi971766652)1.61e-26Showinfo_outline
18203475..203957PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; FHY71_18300; phage(gi100062)1.92e-25Showinfo_outline
19complement(204251..205036)sulfotransferase family protein; FHY71_183050.0Showinfo_outline
20complement(205395..205859)exosporium protein D; FHY71_183100.0Showinfo_outline
21206051..206062attL0.0Showinfo_outline
22complement(206344..206913)PHAGE_Bacill_WBeta_NC_007734: putative mannose 6-phosphate isomerase; FHY71_18315; phage(gi85701420)4.02e-109Showinfo_outline
23208511..208708hypothetical protein; FHY71_183200.0Showinfo_outline
24209025..209507PHAGE_Bacill_phIS3501_NC_019502: ArpU family phage transcriptional regulator; FHY71_18325; phage(gi422934318)6.27e-95Showinfo_outline
25209507..210049PHAGE_Bacill_phIS3501_NC_019502: site-specific phage integrase; FHY71_18330; phage(gi422934319)8.45e-115Showinfo_outline
26210264..211214nucleoside hydrolase; FHY71_183350.0Showinfo_outline
27211658..212311hypothetical protein; FHY71_183400.0Showinfo_outline
28212460..212648hypothetical protein; FHY71_183450.0Showinfo_outline
29complement(212802..213020)hypothetical protein; FHY71_183500.0Showinfo_outline
30213222..213434PHAGE_Bacill_phIS3501_NC_019502: phage protein; FHY71_18355; phage(gi422934324)1.46e-37Showinfo_outline
31213567..213818PHAGE_Bacill_phIS3501_NC_019502: phage protein; FHY71_18360; phage(gi422934325)1.64e-47Showinfo_outline
32213938..214339PHAGE_Bacill_WBeta_NC_007734: hypothetical protein; FHY71_18365; phage(gi85701427)1.12e-34Showinfo_outline
33214345..214722PHAGE_Bacill_phIS3501_NC_019502: HNH endonuclease domain protein; FHY71_18370; phage(gi422934326)5.14e-81Showinfo_outline
34214852..215355PHAGE_Bacill_phIS3501_NC_019502: terminase small subunit; FHY71_18375; phage(gi422934327)1.92e-116Showinfo_outline
35215357..217051PHAGE_Bacill_phIS3501_NC_019502: terminase large subunit; FHY71_18380; phage(gi422934328)0.0Showinfo_outline
36217240..218493PHAGE_Bacill_phIS3501_NC_019502: portal protein; FHY71_18385; phage(gi422934329)0.0Showinfo_outline
37218480..219190PHAGE_Bacill_phIS3501_NC_019502: ATP-dependent Clp protease; FHY71_18390; phage(gi422934330)6.42e-160Showinfo_outline
38219228..220400PHAGE_Bacill_phIS3501_NC_019502: phage major capsid protein; FHY71_18395; phage(gi422934331)0.0Showinfo_outline
39220421..220699PHAGE_Bacill_phIS3501_NC_019502: phage DNA packaging protein; FHY71_18400; phage(gi422934332)2.61e-57Showinfo_outline
40220696..221019PHAGE_Bacill_phIS3501_NC_019502: phage head-tail adaptor; FHY71_18405; phage(gi422934333)9.89e-71Showinfo_outline
41221012..221449PHAGE_Bacill_phIS3501_NC_019502: gp10 family phage protein; FHY71_18410; phage(gi422934334)2.34e-87Showinfo_outline
42221446..221805PHAGE_Bacill_phIS3501_NC_019502: phage protein; FHY71_18415; phage(gi422934335)5.57e-80Showinfo_outline
43221806..222414PHAGE_Bacill_phIS3501_NC_019502: phage major tail protein; FHY71_18420; phage(gi422934336)4.12e-133Showinfo_outline
44222464..222781PHAGE_Bacill_phIS3501_NC_019502: phage protein; FHY71_18425; phage(gi422934337)1.49e-58Showinfo_outline
45223003..226854PHAGE_Bacill_WBeta_NC_007734: putative phage tail tape measure protein; FHY71_18430; phage(gi85701392)0.0Showinfo_outline
46226869..228359PHAGE_Bacill_WBeta_NC_007734: putative phage tail protein; FHY71_18435; phage(gi85701393)0.0Showinfo_outline
47228356..232348PHAGE_Bacill_vB_BceS_MY192_NC_048633: tail assembly protein; FHY71_18440; phage(gi100053)0.0Showinfo_outline
48232387..232623PHAGE_Bacill_phIS3501_NC_019502: phage protein; FHY71_18445; phage(gi422934341)3.62e-18Showinfo_outline
49232623..232862PHAGE_Bacill_phBC6A51_NC_004820: holin; FHY71_18450; phage(gi31415802)6.28e-40Showinfo_outline
50232859..233923PHAGE_Bacill_phBC6A51_NC_004820: N-acetylmuramoyl-L-alanine amidase; FHY71_18455; phage(gi31415803)0.0Showinfo_outline
51238009..238020attR0.0Showinfo_outline
52238966..238993attR0.0Showinfo_outline
Bacillus tropicus strain SN1 NODE_6_length_268991_cov_51.276828
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 268991 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download