Submission Results

Sequence Name: Not Available

GenBank Accession Number: VEPW01000004.1

GenInfo (GI) Number: 0000000000

Download Results: VEPW01000004.1.PHASTER.zip

gi|00000000|ref|VEPW01000004.1| Bacillus tropicus strain CD3-2 NODE_4_length_313215_cov_19.876527, 313215, gc%: 32.94%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
150.9Kbintact15049188666-239662 info_outlinePHAGE_Bacill_phIS3501_NC_019502(18)34.18%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|VEPW01000004.1| Bacillus tropicus strain CD3-2 NODE_4_length_313215_cov_19.876527, 313215, gc%: 32.94%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 53 CDS

#CDS PositionBLAST HitE-ValueSequence
1188666..188677attL0.0Showinfo_outline
2189620..189631attL0.0Showinfo_outline
3complement(197274..198338)PHAGE_Bacill_phBC6A51_NC_004820: N-acetylmuramoyl-L-alanine amidase; FHY73_08000; phage(gi31415803)0.0Showinfo_outline
4complement(198335..198574)PHAGE_Bacill_phBC6A51_NC_004820: holin; FHY73_08005; phage(gi31415802)1.00e-40Showinfo_outline
5complement(198574..198810)PHAGE_Bacill_phIS3501_NC_019502: phage protein; FHY73_08010; phage(gi422934341)3.62e-18Showinfo_outline
6complement(198849..202841)PHAGE_Bacill_vB_BceS_MY192_NC_048633: tail assembly protein; FHY73_08015; phage(gi100053)0.0Showinfo_outline
7complement(202838..204328)PHAGE_Bacill_WBeta_NC_007734: putative phage tail protein; FHY73_08020; phage(gi85701393)0.0Showinfo_outline
8complement(204343..208194)PHAGE_Bacill_WBeta_NC_007734: putative phage tail tape measure protein; FHY73_08025; phage(gi85701392)0.0Showinfo_outline
9complement(208416..208733)PHAGE_Bacill_phIS3501_NC_019502: phage protein; FHY73_08030; phage(gi422934337)7.55e-60Showinfo_outline
10complement(208783..209391)PHAGE_Bacill_phIS3501_NC_019502: phage major tail protein; FHY73_08035; phage(gi422934336)2.79e-140Showinfo_outline
11complement(209392..209751)PHAGE_Bacill_phIS3501_NC_019502: phage protein; FHY73_08040; phage(gi422934335)2.77e-80Showinfo_outline
12complement(209748..210182)PHAGE_Bacill_phIS3501_NC_019502: gp10 family phage protein; FHY73_08045; phage(gi422934334)6.18e-82Showinfo_outline
13complement(210175..210498)PHAGE_Bacill_phIS3501_NC_019502: phage head-tail adaptor; FHY73_08050; phage(gi422934333)5.20e-71Showinfo_outline
14complement(210485..210772)PHAGE_Bacill_phIS3501_NC_019502: phage DNA packaging protein; FHY73_08055; phage(gi422934332)2.51e-61Showinfo_outline
15complement(210793..211965)PHAGE_Bacill_phIS3501_NC_019502: phage major capsid protein; FHY73_08060; phage(gi422934331)0.0Showinfo_outline
16complement(212003..212713)PHAGE_Bacill_phIS3501_NC_019502: ATP-dependent Clp protease; FHY73_08065; phage(gi422934330)2.97e-159Showinfo_outline
17complement(212721..213953)PHAGE_Bacill_phIS3501_NC_019502: portal protein; FHY73_08070; phage(gi422934329)0.0Showinfo_outline
18complement(214141..215835)PHAGE_Bacill_phIS3501_NC_019502: terminase large subunit; FHY73_08075; phage(gi422934328)0.0Showinfo_outline
19complement(215837..216340)PHAGE_Bacill_phIS3501_NC_019502: terminase small subunit; FHY73_08080; phage(gi422934327)1.92e-116Showinfo_outline
20complement(216476..216853)PHAGE_Bacill_phIS3501_NC_019502: HNH endonuclease domain protein; FHY73_08085; phage(gi422934326)2.79e-84Showinfo_outline
21complement(216843..217097)PHAGE_Bacill_phIS3501_NC_019502: phage protein; FHY73_08090; phage(gi422934325)4.30e-47Showinfo_outline
22complement(217116..217322)PHAGE_Bacill_phIS3501_NC_019502: phage protein; FHY73_08095; phage(gi422934324)1.70e-37Showinfo_outline
23217619..217999PHAGE_Staphy_phiBU01_NC_026016: hypothetical protein; FHY73_08100; phage(gi744692820)1.38e-23Showinfo_outline
24complement(217996..218229)PHAGE_Paenib_Vegas_NC_028767: hypothetical protein; FHY73_08105; phage(gi971741631)1.26e-09Showinfo_outline
25complement(218604..219392)PHAGE_Salmon_SEN8_NC_047753: recombination protein; FHY73_08110; phage(gi100049)2.63e-06Showinfo_outline
26complement(219927..220976)YncE family protein; FHY73_081150.0Showinfo_outline
27complement(221298..221840)PHAGE_Bacill_phIS3501_NC_019502: site-specific phage integrase; FHY73_08120; phage(gi422934319)1.47e-115Showinfo_outline
28complement(221840..222322)PHAGE_Bacill_phIS3501_NC_019502: ArpU family phage transcriptional regulator; FHY73_08125; phage(gi422934318)1.42e-98Showinfo_outline
29complement(222624..222756)DUF3983 domain-containing protein; FHY73_081300.0Showinfo_outline
30complement(222879..223235)hypothetical protein; FHY73_081350.0Showinfo_outline
31complement(223478..223753)PHAGE_Bacill_PfEFR_4_NC_048641: tail length tape-measure protein; FHY73_08140; phage(gi100057)5.80e-40Showinfo_outline
32224912..225481PHAGE_Bacill_WBeta_NC_007734: putative mannose 6-phosphate isomerase; FHY73_08145; phage(gi85701420)4.02e-109Showinfo_outline
33225966..226430exosporium protein D; FHY73_081500.0Showinfo_outline
34226789..227574sulfotransferase family protein; FHY73_081550.0Showinfo_outline
35complement(227868..228350)PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; FHY73_08160; phage(gi100062)2.84e-26Showinfo_outline
36complement(228366..228785)PHAGE_Bacill_250_NC_029024: hypothetical protein; FHY73_08165; phage(gi971766652)1.61e-26Showinfo_outline
37complement(228798..229052)PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; FHY73_08170; phage(gi100014)1.88e-52Showinfo_outline
38complement(229067..229240)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FHY73_08175; phage(gi100040)2.22e-32Showinfo_outline
39complement(229265..229459)PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; FHY73_08180; phage(gi100012)1.69e-34Showinfo_outline
40complement(229475..230278)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FHY73_08185; phage(gi100038)0.0Showinfo_outline
41complement(230247..231122)PHAGE_Bacill_phIS3501_NC_019502: phage replication protein DnaD; FHY73_08190; phage(gi422934307)5.04e-55Showinfo_outline
42complement(231499..231765)PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; FHY73_08195; phage(gi100007)8.23e-53Showinfo_outline
43complement(231822..232013)PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; FHY73_08200; phage(gi100006)2.01e-31Showinfo_outline
44232213..232566PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; FHY73_08205; phage(gi100005)2.88e-68Showinfo_outline
45232774..232785attR0.0Showinfo_outline
46complement(232886..233032)complement C1q protein; FHY73_082100.0Showinfo_outline
47complement(233070..234221)PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; FHY73_08215; phage(gi712912391)2.53e-62Showinfo_outline
48234767..235876PROPHAGE_Mesorh_MAFF303099: bacteriophage integrase; FHY73_08220; phage(gi13470699)1.82e-67Showinfo_outline
49complement(235945..236616)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; FHY73_08225; phage(gi31415820)4.04e-142Showinfo_outline
50complement(236921..237406)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; FHY73_08230; phage(gi31415819)1.69e-94Showinfo_outline
51complement(237935..238234)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; FHY73_08235; phage(gi31415818)4.57e-19Showinfo_outline
52complement(238474..238593)PHAGE_Bacill_WBeta_NC_007734: phage lysin N-acetylmuramoyl-L-alanine amidase; FHY73_08240; phage(gi85701396)2.68e-06Showinfo_outline
53239662..239673attR0.0Showinfo_outline
Bacillus tropicus strain CD3-2 NODE_4_length_313215_cov_19.876527
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 313215 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download