Submission Results

Sequence Name: Not Available

GenBank Accession Number: VHIV01000014.1

GenInfo (GI) Number: 0000000000

Download Results: VHIV01000014.1.PHASTER.zip

gi|00000000|ref|VHIV01000014.1| Bacillus sp. (in: firmicutes) strain MHSD28 Contig_14, whole 50505, gc%: 36.52%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
149.2Kbintact1006310-49221 info_outlinePHAGE_Bacill_IEBH_NC_011167(15)36.61%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|VHIV01000014.1| Bacillus sp. (in: firmicutes) strain MHSD28 Contig_14, whole 50505, gc%: 36.52%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 65 CDS

#CDS PositionBLAST HitE-ValueSequence
110..918PHAGE_Bacill_IEBH_NC_011167: terminase small subunit; FJ659_27820; phage(gi197261558)1.40e-167Showinfo_outline
2824..836attL0.0Showinfo_outline
3890..2209PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; FJ659_27825; phage(gi100004)0.0Showinfo_outline
42209..3747PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: minor tail protein; FJ659_27830; phage(gi100056)1.24e-107Showinfo_outline
53734..4657PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: tail length tape-measure protein; FJ659_27835; phage(gi100057)3.00e-60Showinfo_outline
64657..4842hypothetical protein; FJ659_278400.0Showinfo_outline
74862..6070PHAGE_Lactoc_98201_NC_031064: holin; FJ659_27845; phage(gi100034)1.21e-68Showinfo_outline
86092..7021PHAGE_Rhizob_vB_RleS_L338C_NC_023502: capsid protein; FJ659_27850; phage(gi588498668)4.52e-74Showinfo_outline
97028..7195PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; FJ659_27855; phage(gi100060)2.03e-06Showinfo_outline
107201..7590PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; FJ659_27860; phage(gi100061)4.96e-28Showinfo_outline
117590..7982DUF3599 family protein; FJ659_278650.0Showinfo_outline
127967..8452PHAGE_Bacill_vB_BboS_125_NC_048735: hypothetical protein; FJ659_27870; phage(gi100074)2.28e-16Showinfo_outline
138456..8857hypothetical protein; FJ659_278750.0Showinfo_outline
148873..9361PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; FJ659_27880; phage(gi31415794)7.76e-27Showinfo_outline
159430..9852PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; FJ659_27885; phage(gi31415797)9.37e-13Showinfo_outline
169906..10166hypothetical protein; FJ659_278900.0Showinfo_outline
1710186..13893PHAGE_Bacill_IEBH_NC_011167: carbamoyl-phosphate synthase large subunit; FJ659_27895; phage(gi197261572)3.37e-156Showinfo_outline
1813898..14737PHAGE_Lister_vB_LmoS_188_NC_028871: holin-like putative tail component protein; FJ659_27900; phage(gi971750814)2.96e-44Showinfo_outline
1914746..16365PHAGE_Geobac_E2_NC_009552: putative minor structural protein; FJ659_27905; phage(gi148747747)5.61e-50Showinfo_outline
2016420..16728hypothetical protein; FJ659_279100.0Showinfo_outline
2116782..18536PHAGE_Salmon_Se_B_NC_049495: hypothetical protein; FJ659_27915; phage(gi100135)5.93e-10Showinfo_outline
2218607..19563PHAGE_Bacill_Waukesha92_NC_025424: site-specific recombinase; FJ659_27920; phage(gi712912406)7.19e-176Showinfo_outline
2319611..19844PHAGE_Bacill_phIS3501_NC_019502: phage protein; FJ659_27925; phage(gi422934341)1.72e-25Showinfo_outline
2419846..20049PHAGE_Staphy_SpaA1_NC_018277: Holin, phage phi LC3 holin homolog; FJ659_27930; phage(gi399498884)9.96e-31Showinfo_outline
2520046..21110PHAGE_Bacill_phBC6A51_NC_004820: N-acetylmuramoyl-L-alanine amidase; FJ659_27935; phage(gi31415803)0.0Showinfo_outline
26complement(21153..21509)PHAGE_Staphy_SPbeta_like_NC_029119: YolD-like protein; FJ659_27940; phage(gi985761198)3.48e-12Showinfo_outline
27complement(21593..21796)hypothetical protein; FJ659_279450.0Showinfo_outline
28complement(22277..22507)PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; FJ659_27950; phage(gi100025)2.27e-06Showinfo_outline
2922661..22996PHAGE_Geobac_GBK2_NC_023612: hypothetical protein; FJ659_27955; phage(gi589893791)8.09e-15Showinfo_outline
3023121..23474PHAGE_Geobac_GBK2_NC_023612: hypothetical protein; FJ659_27960; phage(gi589893792)3.27e-50Showinfo_outline
3123616..23969PHAGE_Bacill_Carmen17_NC_048698: hypothetical protein; FJ659_27965; phage(gi100016)6.81e-45Showinfo_outline
3223971..26523PHAGE_Geobac_GBK2_NC_023612: hypothetical protein; FJ659_27970; phage(gi589893794)0.0Showinfo_outline
33complement(26713..27186)hypothetical protein; FJ659_279750.0Showinfo_outline
34complement(27164..27961)PHAGE_Mycoba_Adler_NC_023591: sporulation initiation inhibitor protein Soj; FJ659_27980; phage(gi589892278)1.23e-20Showinfo_outline
3528411..29724PHAGE_Bacill_IEBH_NC_011167: potential replication protein; FJ659_27985; phage(gi197261587)0.0Showinfo_outline
3629866..30357hypothetical protein; FJ659_279900.0Showinfo_outline
37complement(31082..31450)PHAGE_Lactob_SA_C12_NC_047760: hypothetical protein; FJ659_27995; phage(gi100065)8.20e-06Showinfo_outline
38complement(31451..31915)PHAGE_Paenib_Vegas_NC_028767: stress protein; FJ659_28000; phage(gi971741613)7.11e-34Showinfo_outline
39complement(31940..32422)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FJ659_28005; phage(gi9630130)4.23e-48Showinfo_outline
40complement(32611..32955)PHAGE_Bacill_IEBH_NC_011167: prophage repressor; FJ659_28010; phage(gi197261591)2.32e-12Showinfo_outline
4133460..34587PHAGE_Bacill_IEBH_NC_011167: helix-turn-helix protein; FJ659_28015; phage(gi197261592)1.29e-106Showinfo_outline
42complement(35078..35425)PHAGE_Bacill_BMBtpLA_NC_028748: XRE family transcriptional regulator; FJ659_28020; phage(gi971482517)1.02e-66Showinfo_outline
4335611..35820PHAGE_Bacill_BMBtpLA_NC_028748: transcriptional regulator, Cro/CI family protein; FJ659_28025; phage(gi971482518)4.30e-44Showinfo_outline
4435881..36651PHAGE_Lactob_Ld25A_NC_025415: putative antirepressor protein; FJ659_28030; phage(gi712912197)3.47e-65Showinfo_outline
4537154..37354PHAGE_Bacill_BM5_NC_029069: hypothetical protein; FJ659_28035; phage(gi985757872)1.10e-07Showinfo_outline
4637550..38176PHAGE_Bacill_TP21_L_NC_011645: gp28; FJ659_28040; phage(gi216905993)4.97e-40Showinfo_outline
4738371..39117PHAGE_Bacill_IEBH_NC_011167: DNA replication protein; FJ659_28045; phage(gi197261518)4.11e-72Showinfo_outline
4839101..39859PHAGE_Bacill_Pony_NC_022770: replication initiator protein; FJ659_28050; phage(gi568191570)5.86e-48Showinfo_outline
4939872..40063PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; FJ659_28055; phage(gi197261521)4.54e-26Showinfo_outline
5040060..40326PHAGE_Bacill_phiCM3_NC_023599: hypothetical protein; FJ659_28060; phage(gi589892751)2.77e-31Showinfo_outline
5140342..40659PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; FJ659_28065; phage(gi197261523)4.26e-15Showinfo_outline
5240671..40994PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; FJ659_28070; phage(gi197261525)1.44e-58Showinfo_outline
5340991..41386PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; FJ659_28075; phage(gi197261526)1.09e-22Showinfo_outline
5441637..41780Fur-regulated basic protein FbpA; FJ659_280800.0Showinfo_outline
5541758..42144PHAGE_Paenib_Tadhana_NC_048691: tail length tape-measure protein; FJ659_28085; phage(gi100057)2.05e-24Showinfo_outline
5642211..42492PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; FJ659_28090; phage(gi197261530)3.49e-21Showinfo_outline
5742684..43130PHAGE_Bacill_IEBH_NC_011167: deoxyuridine 5'-triphosphate nucleotidohydrolase, DUTP; FJ659_28095; phage(gi197261533)6.00e-77Showinfo_outline
5843169..43567PHAGE_Bacill_JBP901_NC_027352: hypothetical protein; FJ659_28100; phage(gi849251747)1.02e-85Showinfo_outline
5943615..43812PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; FJ659_28105; phage(gi197261543)1.35e-32Showinfo_outline
6043715..43727attR0.0Showinfo_outline
6144327..44593hypothetical protein; FJ659_281100.0Showinfo_outline
6244801..45217PHAGE_Thermu_OH2_NC_021784: endodeoxyribonuclease RusA; FJ659_28115; phage(gi526118343)4.43e-60Showinfo_outline
6345460..45843PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; FJ659_28120; phage(gi197261550)3.60e-63Showinfo_outline
6447207..47398hypothetical protein; FJ659_281250.0Showinfo_outline
6548637..49221PHAGE_Clostr_vB_CpeS_CP51_NC_021325: putative resolvase; FJ659_28130; phage(gi509140089)1.62e-37Showinfo_outline
Bacillus sp
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 50505 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download