Submission Results

Sequence Name: Not Available

GenBank Accession Number: VLKB01000007.1

GenInfo (GI) Number: 0000000000

Download Results: VLKB01000007.1.PHASTER.zip

gi|00000000|ref|VLKB01000007.1| Calothrix desertica PCC 7102 Cal7102DRAFT_CDB.6, whole genome 2989987, gc%: 38.58%

Download summary as .txt file: summary.txt file_download

Total: 4 prophage regions have been identified, of which 0 regions are intact, 4 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
124.3Kbincomplete20972034-96390 info_outlinePHAGE_Clostr_c_st_NC_007581(3)39.13%Show info_outline
29.5Kbincomplete2011984359-993889 info_outlinePHAGE_Entero_vB_KleM_RaK2_NC_019526(1)39.52%Show info_outline
38.6Kbincomplete1091863774-1872399 info_outlinePHAGE_Clostr_CDMH1_NC_024144(1)35.91%Show info_outline
48.7Kbincomplete10102911959-2920687 info_outlinePHAGE_Entero_phi92_NC_023693(4)37.14%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|VLKB01000007.1| Calothrix desertica PCC 7102 Cal7102DRAFT_CDB.6, whole genome 2989987, gc%: 38.58%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 11 CDS

#CDS PositionBLAST HitE-ValueSequence
172034..72048attL0.0Showinfo_outline
2complement(83547..84827)PHAGE_Hypert_2_NC_014321: IS element Dka2 orfB; CAL7102_01245; phage(gi300116745)2.01e-16Showinfo_outline
3complement(84916..85509)PHAGE_Clostr_c_st_NC_007581: putative IS transposase (OrfA); CAL7102_01246; phage(gi80159862)4.20e-23Showinfo_outline
485615..87648PHAGE_Synech_S_CBS4_NC_016766: RecA-family ATPase; CAL7102_01247; phage(gi374531824)2.67e-54Showinfo_outline
587812..88849PHAGE_Plankt_PaV_LD_NC_016564: protein kinase; CAL7102_01248; phage(gi371496162)7.36e-12Showinfo_outline
6complement(88744..89415)cation transport protein ChaC; CAL7102_012490.0Showinfo_outline
7complement(89451..89990)catechol 2,3-dioxygenase-like lactoylglutathione lyase family enzyme; CAL7102_012500.0Showinfo_outline
8complement(90021..91046)PHAGE_Mycoba_Hawkeye_NC_024209: FabG-like protein; CAL7102_01251; phage(gi643654788)1.61e-09Showinfo_outline
9complement(91103..91675)catechol 2,3-dioxygenase-like lactoylglutathione lyase family enzyme; CAL7102_012520.0Showinfo_outline
1091792..92706PHAGE_Burkho_phi1026b_NC_005284: gp58; CAL7102_01253; phage(gi38707948)6.77e-10Showinfo_outline
1196390..96404attR0.0Showinfo_outline

Region 2, total 11 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(984359..985036)PHAGE_Sodali_phiSG1_NC_007902: hypothetical protein; CAL7102_02085; phage(gi89886024)8.16e-06Showinfo_outline
2986031..986345PHAGE_Serrat_BF_NC_041917: L-shaped tail fiber protein; CAL7102_02087; phage(gi100266)1.39e-05Showinfo_outline
3986453..988093PHAGE_Cellul_phi14:2_NC_021806: chaperonin GroEL; CAL7102_02088; phage(gi526178751)3.09e-112Showinfo_outline
4988415..989437PHAGE_Thermu_P7426_NC_009804: C5 cytosine-specific DNA methylase; CAL7102_02089; phage(gi157265426)2.75e-38Showinfo_outline
5989437..990444PHAGE_Escher_P13374_NC_018846: restriction endonuclease; CAL7102_02090; phage(gi410491625)1.20e-57Showinfo_outline
6990612..990842hypothetical protein; CAL7102_020910.0Showinfo_outline
7990842..990937hypothetical protein; CAL7102_020920.0Showinfo_outline
8complement(990993..991220)PHAGE_Lactob_LBR48_NC_027990: putative toxin component; CAL7102_02093; phage(gi937456740)1.59e-07Showinfo_outline
9complement(991229..991459)putative RNase H-like HicB family nuclease; CAL7102_020940.0Showinfo_outline
10complement(991501..992133)Uma2 family endonuclease; CAL7102_020950.0Showinfo_outline
11complement(992285..993889)PHAGE_Mycoba_Myrna_NC_011273: gp227; CAL7102_02096; phage(gi203454788)6.32e-85Showinfo_outline

Region 3, total 9 CDS

#CDS PositionBLAST HitE-ValueSequence
11863774..1864025prevent-host-death family protein; CAL7102_028380.0Showinfo_outline
21864133..1864357PHAGE_Plankt_PaV_LD_NC_016564: hypothetical protein; CAL7102_02839; phage(gi371496159)1.95e-07Showinfo_outline
31864354..1864686putative nuclease of predicted toxin-antitoxin system; CAL7102_028400.0Showinfo_outline
41865189..1866553PHAGE_Mycoba_Adler_NC_023591: hypothetical protein; CAL7102_02842; phage(gi589892209)1.19e-29Showinfo_outline
51866637..1867974PHAGE_Mycoba_Adler_NC_023591: hypothetical protein; CAL7102_02843; phage(gi589892209)4.95e-26Showinfo_outline
6complement(1867991..1868926)PHAGE_Pelagi_HTVC008M_NC_020484: adenylate/guanylyl cyclase; CAL7102_02844; phage(gi460042455)6.73e-33Showinfo_outline
7complement(1868996..1869235)hypothetical protein; CAL7102_028450.0Showinfo_outline
8complement(1869473..1869850)hypothetical protein; CAL7102_028460.0Showinfo_outline
91870060..1872399PHAGE_Clostr_CDMH1_NC_024144: putative signalling/NTPase protein; CAL7102_02847; phage(gi640884941)7.26e-15Showinfo_outline

Region 4, total 10 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(2911959..2913419)PHAGE_Microc_MaMV_DC_NC_029002: hypothetical protein; CAL7102_03837; phage(gi971764737)0.0Showinfo_outline
22913601..2914260SMI1/KNR4 family protein SUKH-1; CAL7102_038380.0Showinfo_outline
3complement(2914296..2914868)ribosomal-protein-alanine N-acetyltransferase; CAL7102_038390.0Showinfo_outline
42915236..2916303PHAGE_Entero_phi92_NC_023693: Phi92_gp067; CAL7102_03840; phage(gi726647000)1.39e-105Showinfo_outline
52916391..2917308PHAGE_Entero_phi92_NC_023693: Phi92_gp066; CAL7102_03841; phage(gi726646999)7.56e-118Showinfo_outline
62917322..2917867PHAGE_Entero_phi92_NC_023693: Phi92_gp065; CAL7102_03842; phage(gi726646998)1.61e-65Showinfo_outline
72917864..2918754PHAGE_Escher_phAPEC8_NC_020079: putative dTDP-4-dehydrorhamnose reductase; CAL7102_03843; phage(gi448260370)4.51e-33Showinfo_outline
8complement(2918870..2919817)ribosomal protein L11 methyltransferase; CAL7102_038440.0Showinfo_outline
92919971..2920336PHAGE_Entero_N15_NC_001901: gp49; CAL7102_03845; phage(gi9630516)5.79e-05Showinfo_outline
102920352..2920687PHAGE_Pectob_CBB_NC_041878: hypothetical protein; CAL7102_03846; phage(gi100544)2.87e-07Showinfo_outline
Calothrix desertica PCC 7102 Cal7102DRAFT_CDB
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 2989987 bps
Phages: 4
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download