Submission Results

Sequence Name: Not Available

GenBank Accession Number: VLPN01000065.1

GenInfo (GI) Number: 0000000000

Download Results: VLPN01000065.1.PHASTER.zip

gi|00000000|ref|VLPN01000065.1| Bacillus thuringiensis strain NT06 gnl_MG_NT06_65, whole genome 20864, gc%: 34.20%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
120.4Kbincomplete3033206-20629 info_outlinePHAGE_Bacill_Waukesha92_NC_025424(32)34.20%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|VLPN01000065.1| Bacillus thuringiensis strain NT06 gnl_MG_NT06_65, whole genome 20864, gc%: 34.20%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 33 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(206..505)PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; FPG90_26350; phage(gi712912373)1.64e-65Showinfo_outline
2complement(639..1121)PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; FPG90_26355; phage(gi712912374)2.11e-114Showinfo_outline
3complement(1143..1724)PHAGE_Bacill_Waukesha92_NC_025424: dUTPase; FPG90_26360; phage(gi712912375)7.84e-143Showinfo_outline
4complement(1721..2173)PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; FPG90_26365; phage(gi712912376)1.59e-110Showinfo_outline
5complement(2173..2610)PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; FPG90_26370; phage(gi712912377)6.01e-65Showinfo_outline
6complement(2724..3191)PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; FPG90_26375; phage(gi712912378)1.47e-112Showinfo_outline
7complement(3215..3571)PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; FPG90_26380; phage(gi712912379)4.53e-84Showinfo_outline
8complement(3591..3974)PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; FPG90_26385; phage(gi712912380)1.50e-91Showinfo_outline
9complement(3943..4446)PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; FPG90_26390; phage(gi712912381)1.36e-120Showinfo_outline
10complement(4592..4921)PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; FPG90_26395; phage(gi712912382)3.76e-73Showinfo_outline
11complement(4911..5090)PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; FPG90_26400; phage(gi712912383)7.34e-18Showinfo_outline
12complement(5090..5797)PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; FPG90_26405; phage(gi712912384)3.52e-174Showinfo_outline
13complement(5821..6195)PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; FPG90_26410; phage(gi712912385)1.26e-84Showinfo_outline
14complement(6207..6935)PHAGE_Bacill_Waukesha92_NC_025424: putative rha family phage regulatory protein; FPG90_26415; phage(gi712912386)0.0Showinfo_outline
15complement(7002..7199)PHAGE_Bacill_Waukesha92_NC_025424: repressor protein; FPG90_26420; phage(gi712912387)1.52e-40Showinfo_outline
167413..7763PHAGE_Bacill_Waukesha92_NC_025424: transcriptional regulator; FPG90_26425; phage(gi712912388)5.95e-79Showinfo_outline
17complement(8251..9438)PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; FPG90_26430; phage(gi712912391)0.0Showinfo_outline
1810003..10320PHAGE_Bacill_Waukesha92_NC_025424: transcriptional regulator; FPG90_26435; phage(gi712912392)2.79e-71Showinfo_outline
1910931..11458PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; FPG90_26440; phage(gi712912393)2.23e-122Showinfo_outline
2011478..11822PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; FPG90_26445; phage(gi712912394)2.84e-69Showinfo_outline
2112422..13525PHAGE_Bacill_Waukesha92_NC_025424: DNAD domain protein; FPG90_26450; phage(gi712912395)0.0Showinfo_outline
2213549..14211PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; FPG90_26455; phage(gi712912396)1.64e-161Showinfo_outline
2314494..15525PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; FPG90_26460; phage(gi712912397)0.0Showinfo_outline
2415485..15817PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; FPG90_26465; phage(gi712912398)1.43e-71Showinfo_outline
2515935..16315PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; FPG90_26470; phage(gi712912399)1.58e-90Showinfo_outline
2616327..16857PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; FPG90_26475; phage(gi712912400)5.05e-127Showinfo_outline
2716943..17176PHAGE_Bacill_Waukesha92_NC_025424: DNA binding protein; FPG90_26480; phage(gi712912401)6.26e-51Showinfo_outline
2817611..17895PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; FPG90_26485; phage(gi712912402)3.76e-63Showinfo_outline
29complement(18033..18137)class IIb bacteriocin, lactobin A/cerein 7B family; FPG90_264900.0Showinfo_outline
30complement(18190..19125)PHAGE_Bacill_Waukesha92_NC_025424: endolysin; FPG90_26495; phage(gi712912403)0.0Showinfo_outline
31complement(19142..19372)PHAGE_Bacill_Waukesha92_NC_025424: SPP1 family holin; FPG90_26500; phage(gi712912404)1.51e-48Showinfo_outline
32complement(19415..19654)PHAGE_Bacill_Waukesha92_NC_025424: peptidase; FPG90_26505; phage(gi712912405)2.46e-50Showinfo_outline
33complement(19670..20629)PHAGE_Bacill_Waukesha92_NC_025424: site-specific recombinase; FPG90_26510; phage(gi712912406)0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 20864 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download