Submission Results

Sequence Name: Not Available

GenBank Accession Number: VLTE01000005.1

GenInfo (GI) Number: 0000000000

Download Results: VLTE01000005.1.PHASTER.zip

gi|00000000|ref|VLTE01000005.1| Bacillus sp. HY001 NODE_5_length_663954_cov_59.415714, whole 664052, gc%: 36.08%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 0 regions are intact, 0 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
148.8Kbquestionable706144524-93360 info_outlinePHAGE_Bacill_PfEFR_4_NC_048641(17)35.39%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|VLTE01000005.1| Bacillus sp. HY001 NODE_5_length_663954_cov_59.415714, whole 664052, gc%: 36.08%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 65 CDS

#CDS PositionBLAST HitE-ValueSequence
144524..44535attL0.0Showinfo_outline
2complement(44558..45064)PHAGE_Bacill_Stills_NC_028777: hypothetical protein; FOT98_02730; phage(gi100026)2.91e-05Showinfo_outline
345086..45097attL0.0Showinfo_outline
4complement(45193..45366)50S ribosomal protein L32; FOT98_027350.0Showinfo_outline
5complement(45428..45928)DUF177 domain-containing protein; FOT98_027400.0Showinfo_outline
6complement(46209..46424)PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; FOT98_02745; phage(gi100064)1.02e-43Showinfo_outline
7complement(46445..47080)PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; FOT98_02750; phage(gi100063)1.57e-155Showinfo_outline
8complement(47085..48242)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FOT98_02755; phage(gi100028)0.0Showinfo_outline
9complement(48252..48578)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FOT98_02760; phage(gi100027)6.44e-73Showinfo_outline
10complement(48591..48983)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FOT98_02765; phage(gi100026)3.02e-92Showinfo_outline
1149309..49512PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FOT98_02770; phage(gi100025)1.96e-15Showinfo_outline
1249603..50220hypothetical protein; FOT98_027750.0Showinfo_outline
1350447..51244zinc ribbon domain-containing protein; FOT98_027800.0Showinfo_outline
1451395..52018hypothetical protein; FOT98_027850.0Showinfo_outline
15complement(52249..53010)PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; FOT98_02790; phage(gi100075)2.15e-166Showinfo_outline
16complement(53066..53308)PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; FOT98_02795; phage(gi100074)6.38e-49Showinfo_outline
17complement(53310..53519)PHAGE_Bacill_phIS3501_NC_019502: phage protein; FOT98_02800; phage(gi422934341)6.80e-12Showinfo_outline
18complement(53766..54287)PHAGE_Bacill_Carmen17_NC_048698: endolysin; FOT98_02805; phage(gi100033)2.09e-28Showinfo_outline
19complement(55333..55791)PHAGE_Bacill_Carmen17_NC_048698: holin; FOT98_02810; phage(gi100034)4.26e-22Showinfo_outline
20complement(55884..56144)PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; FOT98_02815; phage(gi100072)4.46e-44Showinfo_outline
21complement(56166..58091)PHAGE_Bacill_phi4J1_NC_029008: tail fiber; FOT98_02820; phage(gi971821625)0.0Showinfo_outline
22complement(58088..59587)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FOT98_02825; phage(gi100018)0.0Showinfo_outline
23complement(59619..64601)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FOT98_02830; phage(gi100017)0.0Showinfo_outline
24complement(64764..65138)PHAGE_Bacill_vB_BceS_MY192_NC_048633: recombination protein; FOT98_02835; phage(gi100049)5.42e-28Showinfo_outline
25complement(65199..65768)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FOT98_02840; phage(gi100014)1.09e-108Showinfo_outline
26complement(65784..66146)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FOT98_02845; phage(gi100013)2.12e-34Showinfo_outline
27complement(66143..66580)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FOT98_02850; phage(gi100012)1.62e-43Showinfo_outline
28complement(66568..66942)PHAGE_Bacill_vB_BceS_MY192_NC_048633: putative transcriptional regulator; FOT98_02855; phage(gi100045)5.82e-45Showinfo_outline
29complement(66944..67240)PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; FOT98_02860; phage(gi100011)4.84e-45Showinfo_outline
30complement(67246..67428)PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; FOT98_02865; phage(gi100010)1.07e-08Showinfo_outline
31complement(67448..68605)PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; FOT98_02870; phage(gi100009)0.0Showinfo_outline
32complement(68625..69380)PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; FOT98_02875; phage(gi100008)3.19e-109Showinfo_outline
33complement(69361..70527)PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; FOT98_02880; phage(gi100007)0.0Showinfo_outline
34complement(70536..72194)PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; FOT98_02885; phage(gi100006)0.0Showinfo_outline
35complement(72191..72526)PHAGE_Clostr_phiCD6356_NC_015262: putative terminase small subunit; FOT98_02890; phage(gi326536848)1.69e-13Showinfo_outline
36complement(72677..73012)PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; FOT98_02895; phage(gi100004)6.81e-40Showinfo_outline
37complement(73009..73263)PHAGE_Bacill_WBeta_NC_007734: hypothetical protein; FOT98_02900; phage(gi85701427)1.20e-22Showinfo_outline
38complement(73851..74144)hypothetical protein; FOT98_029050.0Showinfo_outline
39complement(74345..74887)PHAGE_Strept_phiARI0923_NC_030946: hypothetical protein; FOT98_02910; phage(gi100020)5.83e-64Showinfo_outline
40complement(74890..75369)PHAGE_Bacill_phIS3501_NC_019502: ArpU family phage transcriptional regulator; FOT98_02915; phage(gi422934318)9.85e-95Showinfo_outline
41complement(75676..75867)hypothetical protein; FOT98_029200.0Showinfo_outline
42complement(75894..76016)PHAGE_Bacill_Gamma_NC_007458: conserved phage protein; FOT98_02925; phage(gi77020188)2.00e-07Showinfo_outline
43complement(76041..76331)PHAGE_Bacill_BceA1_NC_048628: tail fiber protein; FOT98_02930; phage(gi100052)3.52e-09Showinfo_outline
44complement(76546..76758)hypothetical protein; FOT98_029350.0Showinfo_outline
45complement(76795..77001)hypothetical protein; FOT98_029400.0Showinfo_outline
46complement(77023..77694)hypothetical protein; FOT98_029450.0Showinfo_outline
47complement(78125..78532)PHAGE_Bacill_BceA1_NC_048628: primase; FOT98_02950; phage(gi100047)1.07e-75Showinfo_outline
48complement(78572..79054)PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; FOT98_02955; phage(gi100062)7.07e-29Showinfo_outline
49complement(79070..79489)PHAGE_Bacill_250_NC_029024: hypothetical protein; FOT98_02960; phage(gi971766652)5.83e-28Showinfo_outline
50complement(79501..79755)PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; FOT98_02965; phage(gi100014)4.05e-53Showinfo_outline
51complement(79770..79943)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FOT98_02970; phage(gi100040)1.26e-32Showinfo_outline
52complement(79968..80162)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FOT98_02975; phage(gi100039)2.04e-35Showinfo_outline
53complement(80175..81089)PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; FOT98_02980; phage(gi100011)0.0Showinfo_outline
54complement(81104..81970)PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; FOT98_02985; phage(gi100010)1.59e-84Showinfo_outline
55complement(82403..82603)PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; FOT98_02990; phage(gi100039)2.08e-12Showinfo_outline
56complement(82714..82908)PHAGE_Bacill_PfEFR_4_NC_048641: u-spanin; FOT98_02995; phage(gi100032)3.13e-07Showinfo_outline
5783077..83433PHAGE_Lactob_iLp84_NC_028783: repressor; FOT98_03000; phage(gi971743094)6.01e-20Showinfo_outline
58complement(83430..83612)hypothetical protein; FOT98_030050.0Showinfo_outline
59complement(83761..83895)ABC transporter ATP-binding protein; FOT98_030100.0Showinfo_outline
60complement(83897..85042)PHAGE_Bacill_vB_BtS_B83_NC_048762: hypothetical protein; FOT98_03015; phage(gi100038)4.80e-10Showinfo_outline
6185231..85242attR0.0Showinfo_outline
6285470..85814PHAGE_Bacill_phi105_NC_048631: hypothetical protein; FOT98_03020; phage(gi100031)3.43e-11Showinfo_outline
63complement(85905..86084)hypothetical protein; FOT98_030250.0Showinfo_outline
6486417..87547PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; FOT98_03030; phage(gi100035)7.85e-73Showinfo_outline
6593360..93371attR0.0Showinfo_outline
Bacillus sp. HY001 NODE_5_length_663954_cov_59
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 664052 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download