Submission Results

Sequence Name: Not Available

GenBank Accession Number: VMVA01000005.1

GenInfo (GI) Number: 0000000000

Download Results: VMVA01000005.1.PHASTER.zip

gi|00000000|ref|VMVA01000005.1| Streptococcus pneumoniae strain NTPn 202 202_contig_5, whole 104348, gc%: 40.26%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 0 regions are intact, 0 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
192.6Kbquestionable851129455-102150 info_outlinePHAGE_Strept_PH10_NC_012756(28)40.38%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|VMVA01000005.1| Streptococcus pneumoniae strain NTPn 202 202_contig_5, whole 104348, gc%: 40.26%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 118 CDS

#CDS PositionBLAST HitE-ValueSequence
19455..9466attL0.0Showinfo_outline
217227..17238attL0.0Showinfo_outline
3complement(22067..22324)PHAGE_Strept_phiARI0031_NC_031910: methyltransferase type 11; AZK10_00405; phage(gi100001)1.52e-55Showinfo_outline
4complement(22382..22573)hypothetical protein; AZK10_004100.0Showinfo_outline
5complement(22595..23551)PHAGE_Strept_phiARI0923_NC_030946: methyltransferase type 11; AZK10_00415; phage(gi100001)0.0Showinfo_outline
6complement(23555..23887)PHAGE_Strept_phiARI0460_1_NC_031913: hypothetical protein; AZK10_00420; phage(gi100002)9.97e-72Showinfo_outline
7complement(23891..24307)PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; AZK10_00425; phage(gi100003)2.58e-93Showinfo_outline
8complement(24317..24667)PHAGE_Strept_phiARI0923_NC_030946: hypothetical protein; AZK10_00430; phage(gi100004)4.88e-83Showinfo_outline
9complement(24670..24873)PHAGE_Strept_phiARI0923_NC_030946: hypothetical protein; AZK10_00435; phage(gi100005)7.77e-40Showinfo_outline
10complement(24854..26236)PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; AZK10_00440; phage(gi100005)0.0Showinfo_outline
11complement(26929..27568)PHAGE_Strept_phiARI0460_1_NC_031913: hypothetical protein; AZK10_00445; phage(gi100006)1.43e-141Showinfo_outline
12complement(28685..32236)PHAGE_Strept_phiARI0131_1_NC_031901: hypothetical protein; AZK10_00450; phage(gi100010)0.0Showinfo_outline
13complement(32241..32591)PHAGE_Strept_phiARI0004_NC_031920: hypothetical protein; AZK10_00455; phage(gi100007)1.01e-83Showinfo_outline
14complement(32600..36253)PHAGE_Strept_phiARI0746_NC_031907: hypothetical protein; AZK10_00460; phage(gi100002)0.0Showinfo_outline
15complement(36240..36590)PHAGE_Strept_phiARI0031_NC_031910: hypothetical protein; AZK10_00465; phage(gi100009)6.02e-79Showinfo_outline
16complement(36629..37009)PHAGE_Strept_phiARI0746_NC_031907: hypothetical protein; AZK10_00470; phage(gi100003)2.46e-87Showinfo_outline
17complement(37014..37427)PHAGE_Strept_phiARI0004_NC_031920: hypothetical protein; AZK10_00475; phage(gi100010)2.32e-92Showinfo_outline
18complement(37430..37798)PHAGE_Strept_phiARI0746_NC_031907: hypothetical protein; AZK10_00480; phage(gi100005)7.52e-86Showinfo_outline
19complement(37795..38310)PHAGE_Strept_phiARI0004_NC_031920: hypothetical protein; AZK10_00485; phage(gi100012)4.17e-125Showinfo_outline
20complement(38285..38587)PHAGE_Strept_DCC1738_NC_024361: phage protein; AZK10_00490; phage(gi658307489)4.92e-68Showinfo_outline
21complement(38604..38915)PHAGE_Brocho_BL3_NC_015254: gp10; AZK10_00495; phage(gi327409400)6.52e-06Showinfo_outline
22complement(38917..39105)PHAGE_Strept_phiARI0468_1_NC_031929: hypothetical protein; AZK10_00500; phage(gi100012)1.15e-37Showinfo_outline
23complement(39095..39277)PHAGE_Strept_phiARI0468_1_NC_031929: hypothetical protein; AZK10_00505; phage(gi100013)1.44e-34Showinfo_outline
24complement(39289..40134)PHAGE_Strept_phiARI0468_1_NC_031929: hypothetical protein; AZK10_00510; phage(gi100014)0.0Showinfo_outline
25complement(40141..40716)PHAGE_Strept_phiARI0131_1_NC_031901: hypothetical protein; AZK10_00515; phage(gi100020)3.40e-129Showinfo_outline
26complement(40884..41135)PHAGE_Strept_phiARI0746_NC_031907: hypothetical protein; AZK10_00520; phage(gi100011)1.08e-52Showinfo_outline
27complement(41137..41382)PHAGE_Strept_phiARI0131_1_NC_031901: hypothetical protein; AZK10_00525; phage(gi100022)6.15e-54Showinfo_outline
28complement(41425..41838)PHAGE_Strept_phiARI0131_1_NC_031901: hypothetical protein; AZK10_00530; phage(gi100023)9.69e-94Showinfo_outline
29complement(41835..42044)PHAGE_Strept_phiARI0746_NC_031907: hypothetical protein; AZK10_00535; phage(gi100015)9.49e-44Showinfo_outline
30complement(42046..43629)PHAGE_Strept_phiARI0746_NC_031907: hypothetical protein; AZK10_00540; phage(gi100016)0.0Showinfo_outline
31complement(43592..45061)PHAGE_Strept_phiARI0468_1_NC_031929: hypothetical protein; AZK10_00545; phage(gi100019)0.0Showinfo_outline
32complement(45073..46287)PHAGE_Strept_20617_NC_023503: phage terminase small subunit; AZK10_00550; phage(gi588295114)0.0Showinfo_outline
33complement(46277..46771)PHAGE_Strept_PH15_NC_010945: putative small subunit of phage terminase; AZK10_00555; phage(gi190151447)1.74e-77Showinfo_outline
34complement(47052..47135)tRNA0.0Showinfo_outline
35complement(47220..47642)PHAGE_Strept_phiARI0462_NC_031942: hypothetical protein; AZK10_00560; phage(gi100024)7.55e-94Showinfo_outline
36complement(47712..48083)PHAGE_Strept_phiARI0468_1_NC_031929: hypothetical protein; AZK10_00565; phage(gi100023)5.87e-73Showinfo_outline
37complement(48083..48400)PHAGE_Strept_SpSL1_NC_027396: hypothetical protein; AZK10_00570; phage(gi849256081)5.91e-62Showinfo_outline
38complement(48397..48810)PHAGE_Strept_phiARI0468_1_NC_031929: hypothetical protein; AZK10_00575; phage(gi100024)5.08e-49Showinfo_outline
39complement(48822..49244)PHAGE_Strept_phiARI0468_1_NC_031929: hypothetical protein; AZK10_00580; phage(gi100029)4.90e-85Showinfo_outline
40complement(49241..49501)PHAGE_Strept_EJ_1_NC_005294: hypothetical protein; AZK10_00585; phage(gi39653703)1.79e-50Showinfo_outline
41complement(49659..50351)PHAGE_Strept_phiARI0468_1_NC_031929: hypothetical protein; AZK10_00590; phage(gi100027)3.72e-97Showinfo_outline
42complement(50353..50667)PHAGE_Strept_phiARI0468_2_NC_031923: hypothetical protein; AZK10_00595; phage(gi100028)1.44e-71Showinfo_outline
43complement(50695..50877)PHAGE_Strept_T12_NC_028700: putative HTH protein; AZK10_00600; phage(gi966201502)5.72e-06Showinfo_outline
44complement(50893..51324)PHAGE_Strept_phiARI0468_1_NC_031929: hypothetical protein; AZK10_00605; phage(gi100030)2.38e-99Showinfo_outline
45complement(51321..51650)PHAGE_Strept_phiARI0468_1_NC_031929: hypothetical protein; AZK10_00610; phage(gi100031)5.44e-73Showinfo_outline
46complement(51664..51873)hypothetical protein; AZK10_006150.0Showinfo_outline
47complement(51839..52345)PHAGE_Strept_phiARI0468_1_NC_031929: u-spanin; AZK10_00620; phage(gi100032)3.43e-121Showinfo_outline
48complement(52355..52771)PHAGE_Strept_phiARI0462_NC_031942: holin; AZK10_00625; phage(gi100034)1.91e-97Showinfo_outline
49complement(52866..53201)PHAGE_Strept_TP_J34_NC_020197: hypothetical protein; AZK10_00630; phage(gi444475894)1.39e-15Showinfo_outline
50complement(53194..53517)PHAGE_Strept_phiARI0468_1_NC_031929: hypothetical protein; AZK10_00635; phage(gi100035)3.69e-72Showinfo_outline
51complement(53495..54559)PHAGE_Strept_phiARI0468_1_NC_031929: hypothetical protein; AZK10_00640; phage(gi100036)0.0Showinfo_outline
52complement(54569..55321)PHAGE_Strept_phiARI0004_NC_031920: hypothetical protein; AZK10_00645; phage(gi100036)0.0Showinfo_outline
53complement(55339..55524)PHAGE_Strept_phiARI0004_NC_031920: putative phosphoesterase; AZK10_00650; phage(gi100037)2.11e-38Showinfo_outline
54complement(55829..56083)PHAGE_Strept_IC1_NC_024370: Phage protein; AZK10_00655; phage(gi658307798)4.02e-41Showinfo_outline
55complement(56076..56279)PHAGE_Strept_phiARI0468_1_NC_031929: DNA adenine methyltransferase; AZK10_00660; phage(gi100041)9.01e-30Showinfo_outline
5656765..56983PHAGE_Strept_PH15_NC_010945: hypothetical protein; AZK10_00665; phage(gi190151424)5.17e-06Showinfo_outline
57complement(56938..57174)PHAGE_Strept_phiARI0131_1_NC_031901: tail fiber protein; AZK10_00670; phage(gi100052)1.49e-24Showinfo_outline
58complement(57424..57786)PHAGE_Strept_IC1_NC_024370: Phage protein; AZK10_00675; phage(gi658307803)1.48e-25Showinfo_outline
59complement(57829..58056)PHAGE_Strept_EJ_1_NC_005294: Cro repressor; AZK10_00680; phage(gi39653684)1.01e-44Showinfo_outline
6058129..58335hypothetical protein; AZK10_006850.0Showinfo_outline
61complement(58247..58543)PHAGE_Strept_K13_NC_024357: phage protein; AZK10_00690; phage(gi658307280)1.79e-37Showinfo_outline
6258783..59289PHAGE_Staphy_StB12_NC_020490: hypothetical protein; AZK10_00695; phage(gi939535487)7.91e-09Showinfo_outline
63complement(59738..60013)PHAGE_Strept_DCC1738_NC_024361: phage protein; AZK10_00700; phage(gi658307527)7.99e-61Showinfo_outline
6460186..60992PHAGE_Strept_K13_NC_024357: phage DNA binding protein; AZK10_00705; phage(gi658307283)0.0Showinfo_outline
6560994..61194PHAGE_Strept_PH15_NC_010945: hypothetical protein; AZK10_00710; phage(gi190151418)1.09e-37Showinfo_outline
6661368..62813PHAGE_Strept_IC1_NC_024370: Integrase; AZK10_00715; phage(gi658307809)0.0Showinfo_outline
67complement(62831..62893)competence protein ComGC; AZK10_007200.0Showinfo_outline
68complement(62895..63911)type II secretion system F family protein; AZK10_007250.0Showinfo_outline
69complement(63859..64800)type II/IV secretion system protein; AZK10_007300.0Showinfo_outline
70complement(64876..65247)DUF1033 family protein; AZK10_007350.0Showinfo_outline
71complement(65392..66450)PHAGE_Synech_S_SM2_NC_015279: zinc-containing alcohol dehydrogenase superfamily protein; AZK10_00740; phage(gi326781942)1.43e-14Showinfo_outline
72complement(66613..67764)N-acetylglucosamine-6-phosphate deacetylase; AZK10_007450.0Showinfo_outline
73complement(67917..69734)PHAGE_Salmon_BTP1_NC_042346: hypothetical protein; AZK10_00750; phage(gi100015)3.40e-26Showinfo_outline
74complement(69832..70974)tRNA guanosine(34) transglycosylase Tgt; AZK10_007550.0Showinfo_outline
7571715..71894PHAGE_Staphy_vB_SpsS_QT1_NC_048192: hypothetical protein; AZK10_00760; phage(gi100026)6.00e-07Showinfo_outline
76complement(71984..72949)PHAGE_Strept_phiARI0131_1_NC_031901: hypothetical protein; AZK10_00765; phage(gi100007)3.97e-152Showinfo_outline
77complement(72949..73368)PHAGE_Strept_phiARI0923_NC_030946: hypothetical protein; AZK10_00770; phage(gi100003)4.79e-72Showinfo_outline
78complement(73379..74038)PHAGE_Strept_SM1_NC_004996: hypothetical protein; AZK10_00775; phage(gi32469428)7.95e-121Showinfo_outline
79complement(74028..74240)PHAGE_Strept_SpSL1_NC_027396: hypothetical protein; AZK10_00780; phage(gi849256056)1.49e-42Showinfo_outline
80complement(74237..78754)PHAGE_Strept_phiARI0923_NC_030946: hypothetical protein; AZK10_00785; phage(gi100006)0.0Showinfo_outline
81complement(78845..79567)PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; AZK10_00790; phage(gi100006)1.08e-170Showinfo_outline
82complement(79564..82584)PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; AZK10_00795; phage(gi100007)0.0Showinfo_outline
83complement(82861..83280)PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; AZK10_00800; phage(gi100008)5.86e-97Showinfo_outline
84complement(83292..83867)PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; AZK10_00805; phage(gi100009)1.13e-137Showinfo_outline
85complement(83879..84202)PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; AZK10_00810; phage(gi100010)6.13e-70Showinfo_outline
86complement(84199..84546)PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; AZK10_00815; phage(gi100011)3.99e-42Showinfo_outline
87complement(84543..84842)PHAGE_Butyri_Arawn_NC_048848: hypothetical protein; AZK10_00820; phage(gi100008)2.47e-18Showinfo_outline
88complement(84829..85110)PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; AZK10_00825; phage(gi100012)4.41e-37Showinfo_outline
89complement(85113..85403)PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; AZK10_00830; phage(gi100013)8.32e-18Showinfo_outline
90complement(85415..86587)PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; AZK10_00835; phage(gi100014)0.0Showinfo_outline
91complement(86572..87162)PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; AZK10_00840; phage(gi100015)7.52e-117Showinfo_outline
92complement(87146..88348)PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; AZK10_00845; phage(gi100016)0.0Showinfo_outline
93complement(88366..88584)PHAGE_Strept_PH10_NC_012756: hypothetical protein; AZK10_00850; phage(gi238821350)3.36e-44Showinfo_outline
94complement(88592..89364)PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; AZK10_00855; phage(gi100017)1.21e-37Showinfo_outline
95complement(89357..89749)PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; AZK10_00860; phage(gi100018)8.11e-90Showinfo_outline
9689855..89866attR0.0Showinfo_outline
97complement(89885..90205)PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; AZK10_00865; phage(gi100019)1.20e-73Showinfo_outline
98complement(90413..90628)PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; AZK10_00870; phage(gi100020)3.03e-06Showinfo_outline
99complement(90791..91333)PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; AZK10_00875; phage(gi100021)4.57e-131Showinfo_outline
100complement(91522..91923)PHAGE_Strept_PH10_NC_012756: hypothetical protein; AZK10_00880; phage(gi238821344)6.74e-90Showinfo_outline
101complement(91920..92258)PHAGE_Strept_phiARI0923_NC_030946: hypothetical protein; AZK10_00885; phage(gi100022)2.24e-57Showinfo_outline
102complement(92249..92500)PHAGE_Strept_PH10_NC_012756: hypothetical protein; AZK10_00890; phage(gi238821342)1.16e-50Showinfo_outline
103complement(92500..92760)PHAGE_Strept_SpSL1_NC_027396: hypothetical protein; AZK10_00895; phage(gi849256084)3.26e-54Showinfo_outline
104complement(92920..93615)PHAGE_Strept_phiARI0462_NC_031942: hypothetical protein; AZK10_00900; phage(gi100028)1.35e-24Showinfo_outline
105complement(93593..93901)hypothetical protein; AZK10_009050.0Showinfo_outline
106complement(93914..95269)PHAGE_Bacill_B5S_NC_047736: hypothetical protein; AZK10_00910; phage(gi100013)2.16e-14Showinfo_outline
107complement(95266..95742)PHAGE_Strept_SM1_NC_004996: gp22; AZK10_00915; phage(gi32469453)1.56e-104Showinfo_outline
108complement(95846..96076)PHAGE_Strept_SpSL1_NC_027396: hypothetical protein; AZK10_00920; phage(gi849256075)1.64e-48Showinfo_outline
109complement(96091..96861)PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; AZK10_00925; phage(gi100028)9.38e-164Showinfo_outline
110complement(97001..97795)PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; AZK10_00930; phage(gi100029)2.30e-65Showinfo_outline
111complement(97816..98055)PHAGE_Strept_phiARI0462_NC_031942: hypothetical protein; AZK10_00935; phage(gi100040)9.50e-34Showinfo_outline
112complement(98066..98356)PHAGE_Strept_315.6_NC_004589: hypothetical protein; AZK10_00940; phage(gi28876482)2.08e-05Showinfo_outline
113complement(98455..99165)PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; AZK10_00945; phage(gi100030)4.24e-154Showinfo_outline
114complement(99187..99393)PHAGE_Lactoc_28201_NC_031013: hypothetical protein; AZK10_00950; phage(gi100005)2.92e-11Showinfo_outline
11599567..100322PHAGE_Strept_phiARI0131_1_NC_031901: hypothetical protein; AZK10_00955; phage(gi100004)1.00e-36Showinfo_outline
116100336..100839hypothetical protein; AZK10_009600.0Showinfo_outline
117100842..100853attR0.0Showinfo_outline
118101005..102150PHAGE_Strept_315.6_NC_004589: putative integrase; AZK10_00965; phage(gi28876488)3.37e-90Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 104348 bps
Phages: 1
arrow_upwardarrow_upwardarrow_upward
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download