Submission Results

Sequence Name: Not Available

GenBank Accession Number: VOUY01000006.1

GenInfo (GI) Number: 0000000000

Download Results: VOUY01000006.1.PHASTER.zip

gi|00000000|ref|VOUY01000006.1| Bacillus cereus strain AT12 6, whole genome shotgun sequence. 222785, gc%: 35.08%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
131.1Kbintact12039191573-222696 info_outlinePHAGE_Bacill_WBeta_NC_007734(22)35.35%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|VOUY01000006.1| Bacillus cereus strain AT12 6, whole genome shotgun sequence. 222785, gc%: 35.08%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 39 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(191573..191827)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTO65_16495; phage(gi9630143)6.35e-07Showinfo_outline
2192099..1922842TM domain-containing protein; FTO65_165000.0Showinfo_outline
3192466..193695PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; FTO65_16505; phage(gi85701407)0.0Showinfo_outline
4complement(194041..194391)PHAGE_Bacill_WBeta_NC_007734: helix-turn-helix Cro and cI family protein; FTO65_16510; phage(gi85701408)3.25e-74Showinfo_outline
5194551..194778PHAGE_Bacill_WBeta_NC_007734: helix-turn-helix Cro and cI family protein; FTO65_16515; phage(gi85701409)5.19e-39Showinfo_outline
6195220..195966PHAGE_Bacill_WBeta_NC_007734: putative antirepressor; FTO65_16520; phage(gi85701411)1.80e-102Showinfo_outline
7196030..196683PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; FTO65_16525; phage(gi85701412)3.05e-81Showinfo_outline
8196843..197616PHAGE_Bacill_vB_BhaS_171_NC_030904: tail fiber protein; FTO65_16530; phage(gi100052)1.73e-42Showinfo_outline
9197628..198509PHAGE_Bacill_BM5_NC_029069: hypothetical protein; FTO65_16535; phage(gi985757818)1.08e-32Showinfo_outline
10198509..198733PHAGE_Bacill_WBeta_NC_007734: hypothetical protein; FTO65_16540; phage(gi85701415)2.62e-14Showinfo_outline
11198730..199476PHAGE_Bacill_WBeta_NC_007734: putative RNA polymerase sigma subunit; FTO65_16545; phage(gi85701416)2.21e-127Showinfo_outline
12199473..199652hypothetical protein; FTO65_165500.0Showinfo_outline
13complement(199770..200459)PHAGE_Bacill_phBC6A52_NC_004821: Collagen triple helix repeat protein; FTO65_16555; phage(gi31415834)3.69e-18Showinfo_outline
14complement(200740..201204)hypothetical protein; FTO65_165600.0Showinfo_outline
15complement(201516..201980)exosporium protein D; FTO65_165650.0Showinfo_outline
16202719..202907PHAGE_Bacill_WBeta_NC_007734: hypothetical protein; FTO65_16570; phage(gi85701423)3.33e-31Showinfo_outline
17203060..203182PHAGE_Bacill_Gamma_NC_007458: conserved phage protein; FTO65_16575; phage(gi77020188)1.73e-19Showinfo_outline
18203355..203750PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; FTO65_16580; phage(gi85701424)1.05e-83Showinfo_outline
19complement(203930..204595)twin-arginine translocation signal domain-containing protein; FTO65_165850.0Showinfo_outline
20205003..205506hypothetical protein; FTO65_165900.0Showinfo_outline
21205743..205967PHAGE_Bacill_WBeta_NC_007734: hypothetical protein; FTO65_16595; phage(gi85701425)7.74e-30Showinfo_outline
22205974..206192PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; FTO65_16600; phage(gi85701426)5.88e-44Showinfo_outline
23206199..206453PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; FTO65_16605; phage(gi85701429)3.59e-49Showinfo_outline
24206468..206854PHAGE_Bacill_WBeta_NC_007734: hypothetical protein; FTO65_16610; phage(gi85701427)6.01e-38Showinfo_outline
25206860..207237PHAGE_Bacill_WBeta_NC_007734: putative phage endonuclease; FTO65_16615; phage(gi85701432)6.79e-37Showinfo_outline
26207376..207876PHAGE_Bacill_BtCS33_NC_018085: phage terminase small subunit, P27 family; FTO65_16620; phage(gi392972711)3.56e-88Showinfo_outline
27207873..209567PHAGE_Geobac_E2_NC_009552: putative terminase large subunit; FTO65_16625; phage(gi148747729)0.0Showinfo_outline
28209756..211012PHAGE_Bacill_phIS3501_NC_019502: portal protein; FTO65_16630; phage(gi422934329)0.0Showinfo_outline
29210999..211709PHAGE_Bacill_phiCM3_NC_023599: ATP-dependent endopeptidase clp proteolytic subunit clpP; FTO65_16635; phage(gi589892717)1.11e-164Showinfo_outline
30211747..212919PHAGE_Bacill_BtCS33_NC_018085: phage major capsid protein, HK97 family; FTO65_16640; phage(gi392972715)0.0Showinfo_outline
31212940..213218PHAGE_Clostr_phiCT19406C_NC_029006: head-tail connector; FTO65_16645; phage(gi971821548)3.26e-23Showinfo_outline
32213215..213538PHAGE_Bacill_WBeta_NC_007734: putative head-tail adaptor protein; FTO65_16650; phage(gi85701386)4.81e-62Showinfo_outline
33213531..213965PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; FTO65_16655; phage(gi85701387)1.58e-82Showinfo_outline
34213962..214321PHAGE_Bacill_WBeta_NC_007734: conserved structural protein; FTO65_16660; phage(gi85701388)2.55e-73Showinfo_outline
35214322..214930PHAGE_Bacill_WBeta_NC_007734: putative major tail protein; FTO65_16665; phage(gi85701389)2.86e-127Showinfo_outline
36214980..215297PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; FTO65_16670; phage(gi85701390)6.09e-68Showinfo_outline
37215520..219371PHAGE_Bacill_WBeta_NC_007734: putative phage tail tape measure protein; FTO65_16675; phage(gi85701392)0.0Showinfo_outline
38219386..220876PHAGE_Bacill_WBeta_NC_007734: putative phage tail protein; FTO65_16680; phage(gi85701393)0.0Showinfo_outline
39220873..222696PHAGE_Bacill_WBeta_NC_007734: putative minor structural protein; FTO65_16685; phage(gi85701394)0.0Showinfo_outline
Bacillus cereus strain AT12 6, whole genome shotgun sequence
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 222785 bps
Phages: 1
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Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download