Submission Results

Sequence Name: Not Available

GenBank Accession Number: VOUY01000025.1

GenInfo (GI) Number: 0000000000

Download Results: VOUY01000025.1.PHASTER.zip

gi|00000000|ref|VOUY01000025.1| Bacillus cereus strain AT12 25, whole genome shotgun sequence. 54997, gc%: 35.30%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
142.2Kbintact1206111975-54207 info_outlinePHAGE_Bacill_IEBH_NC_011167(14)36.16%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|VOUY01000025.1| Bacillus cereus strain AT12 25, whole genome shotgun sequence. 54997, gc%: 35.30%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 61 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(11975..13147)PHAGE_Lactoc_TP901_1_NC_002747: ORF54; FTO65_27935; phage(gi13786585)8.74e-13Showinfo_outline
2complement(13198..13674)PHAGE_Paenib_Vegas_NC_028767: stress protein; FTO65_27940; phage(gi971741613)1.76e-24Showinfo_outline
3complement(13693..13998)hypothetical protein; FTO65_279450.0Showinfo_outline
4complement(14110..14811)class D sortase; FTO65_279500.0Showinfo_outline
5complement(14869..15390)LPXTG cell wall anchor domain-containing protein; FTO65_279550.0Showinfo_outline
6complement(15647..15991)PHAGE_Bacill_phBC6A51_NC_004820: Transcriptional regulator, MerR family; FTO65_27960; phage(gi31415741)9.33e-36Showinfo_outline
716483..17658PHAGE_Bacill_250_NC_029024: helix-turn-helix domain protein; FTO65_27965; phage(gi971766626)4.95e-31Showinfo_outline
8complement(18123..18479)PHAGE_Bacill_BceA1_NC_048628: endolysin; FTO65_27970; phage(gi100033)4.68e-21Showinfo_outline
918672..18866PHAGE_Pantoe_vB_PagM_AAM37_NC_048766: hypothetical protein; FTO65_27975; phage(gi100031)1.26e-08Showinfo_outline
1018954..19730PHAGE_Clostr_phiCD211_NC_029048: Phage antirepressor protein (modular protein); FTO65_27980; phage(gi981220866)1.73e-48Showinfo_outline
1120526..20726PHAGE_Bacill_BM5_NC_029069: hypothetical protein; FTO65_27985; phage(gi985757872)9.50e-08Showinfo_outline
1220922..21554PHAGE_Bacill_TP21_L_NC_011645: gp28; FTO65_27990; phage(gi216905993)5.11e-41Showinfo_outline
1321746..21967hypothetical protein; FTO65_279950.0Showinfo_outline
1421968..22705PHAGE_Bacill_250_NC_029024: DNA replication protein; FTO65_28000; phage(gi971766636)4.87e-74Showinfo_outline
1522689..23447PHAGE_Bacill_Pony_NC_022770: replication initiator protein; FTO65_28005; phage(gi568191570)4.35e-45Showinfo_outline
1623462..23686PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; FTO65_28010; phage(gi197261521)9.70e-26Showinfo_outline
1723640..23894PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FTO65_28015; phage(gi100042)2.51e-21Showinfo_outline
1823891..24157PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; FTO65_28020; phage(gi100043)1.25e-27Showinfo_outline
1924165..24578PHAGE_Bacill_250_NC_029024: hypothetical protein; FTO65_28025; phage(gi971766653)6.01e-38Showinfo_outline
2024588..24734PHAGE_Bacill_PfEFR_4_NC_048641: DNA helicase; FTO65_28030; phage(gi100044)5.76e-06Showinfo_outline
2124718..24912PHAGE_Bacill_PfEFR_4_NC_048641: putative transcriptional regulator; FTO65_28035; phage(gi100045)1.38e-27Showinfo_outline
2224979..25233PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; FTO65_28040; phage(gi197261530)9.50e-34Showinfo_outline
2325424..25936PHAGE_Bacill_250_NC_029024: deoxyuridine 5'-triphosphate nucleotidohydrolase; FTO65_28045; phage(gi971766646)1.87e-73Showinfo_outline
2425969..26274PHAGE_Vibrio_vB_VpaM_MAR_NC_019722: hypothetical protein; FTO65_28050; phage(gi428782758)6.51e-07Showinfo_outline
25complement(26364..26723)septum formation initiator family protein; FTO65_280550.0Showinfo_outline
26complement(27377..27556)hypothetical protein; FTO65_280600.0Showinfo_outline
2727614..27796PHAGE_Bacill_Evoli_NC_024207: hypothetical protein; FTO65_28065; phage(gi643217575)2.22e-22Showinfo_outline
2827969..28163PHAGE_Bacill_PfEFR_4_NC_048641: minor tail protein; FTO65_28070; phage(gi100055)3.20e-32Showinfo_outline
2928627..29256PHAGE_Bacill_BceA1_NC_048628: tail assembly protein; FTO65_28075; phage(gi100053)1.84e-57Showinfo_outline
3029395..29766PHAGE_Bacill_250_NC_029024: hypothetical protein; FTO65_28080; phage(gi971766657)1.18e-17Showinfo_outline
3130751..31071hypothetical protein; FTO65_280850.0Showinfo_outline
3231171..31353hypothetical protein; FTO65_280900.0Showinfo_outline
3331586..31864hypothetical protein; FTO65_280950.0Showinfo_outline
3431943..32023LPXTG cell wall anchor domain-containing protein; FTO65_281000.0Showinfo_outline
3532147..32350hypothetical protein; FTO65_281050.0Showinfo_outline
36complement(32483..32620)DUF3956 domain-containing protein; FTO65_281100.0Showinfo_outline
3733018..33290PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: tail tip protein; FTO65_28115; phage(gi100054)5.23e-17Showinfo_outline
38complement(33433..33654)hypothetical protein; FTO65_281200.0Showinfo_outline
39complement(33673..33870)hypothetical protein; FTO65_281250.0Showinfo_outline
4034093..35022PHAGE_Bacill_phi4J1_NC_029008: terminase small subunit; FTO65_28130; phage(gi971821634)0.0Showinfo_outline
4134994..36310PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; FTO65_28135; phage(gi100004)0.0Showinfo_outline
4236310..37848PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: minor tail protein; FTO65_28140; phage(gi100056)2.21e-108Showinfo_outline
4337835..38761PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: tail length tape-measure protein; FTO65_28145; phage(gi100057)7.32e-62Showinfo_outline
4438808..39818PHAGE_Lactoc_98201_NC_031064: holin; FTO65_28150; phage(gi100034)1.93e-64Showinfo_outline
4539840..40769PHAGE_Rhizob_vB_RleS_L338C_NC_023502: capsid protein; FTO65_28155; phage(gi588498668)2.62e-74Showinfo_outline
4640776..40943PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; FTO65_28160; phage(gi100060)2.30e-06Showinfo_outline
4740949..41338PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; FTO65_28165; phage(gi100061)3.85e-29Showinfo_outline
4841338..41730DUF3599 family protein; FTO65_281700.0Showinfo_outline
4941715..42206PHAGE_Bacill_vB_BboS_125_NC_048735: hypothetical protein; FTO65_28175; phage(gi100074)2.68e-12Showinfo_outline
5042209..42610hypothetical protein; FTO65_281800.0Showinfo_outline
5142626..43093PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; FTO65_28185; phage(gi31415794)1.12e-22Showinfo_outline
5243161..43562PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; FTO65_28190; phage(gi31415797)4.49e-10Showinfo_outline
5343640..43900hypothetical protein; FTO65_281950.0Showinfo_outline
5443916..45049PHAGE_Bacill_250_NC_029024: carbamoyl-phosphate synthase large subunit; FTO65_28200; phage(gi971766620)3.02e-85Showinfo_outline
5547107..47988PHAGE_Staphy_phiMR25_NC_010808: putative minor tail protein; FTO65_28205; phage(gi189427179)5.92e-30Showinfo_outline
5648000..50429PHAGE_Anoxyb_A403_NC_048701: methyltransferase type 11; FTO65_28210; phage(gi100001)3.99e-152Showinfo_outline
5750486..51925PHAGE_Bacill_250_NC_029024: hypothetical protein; FTO65_28215; phage(gi971766624)5.60e-93Showinfo_outline
5851938..52609PHAGE_Bacill_250_NC_029024: hypothetical protein; FTO65_28220; phage(gi971766644)1.20e-60Showinfo_outline
5952708..52941PHAGE_Bacill_phIS3501_NC_019502: phage protein; FTO65_28225; phage(gi422934341)1.30e-24Showinfo_outline
6052943..53143PHAGE_Staphy_SpaA1_NC_018277: Holin, phage phi LC3 holin homolog; FTO65_28230; phage(gi399498884)6.77e-31Showinfo_outline
6153143..54207PHAGE_Bacill_phBC6A51_NC_004820: N-acetylmuramoyl-L-alanine amidase; FTO65_28235; phage(gi31415803)0.0Showinfo_outline
Bacillus cereus strain AT12 25, whole genome shotgun sequence
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 54997 bps
Phages: 1
arrow_upwardarrow_upwardarrow_upward
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download