Submission Results

Sequence Name: Not Available

GenBank Accession Number: VOVE01000001.1

GenInfo (GI) Number: 0000000000

Download Results: VOVE01000001.1.PHASTER.zip

gi|00000000|ref|VOVE01000001.1| Bacillus paranthracis strain CF87 1, whole genome shotgun 359048, gc%: 35.94%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
157.4Kbincomplete5065132086-189580 info_outlinePHAGE_Bacill_PfEFR_4_NC_048641(13)34.80%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|VOVE01000001.1| Bacillus paranthracis strain CF87 1, whole genome shotgun 359048, gc%: 35.94%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 69 CDS

#CDS PositionBLAST HitE-ValueSequence
1132086..132097attL0.0Showinfo_outline
2complement(144892..146022)PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; FT640_00860; phage(gi100035)1.56e-71Showinfo_outline
3146288..146554hypothetical protein; FT640_008650.0Showinfo_outline
4146544..147122PHAGE_Lactob_Satyr_NC_047918: hypothetical protein; FT640_00870; phage(gi100065)3.65e-13Showinfo_outline
5147109..147543hypothetical protein; FT640_008750.0Showinfo_outline
6147628..147639attL0.0Showinfo_outline
7complement(148038..148382)PHAGE_Bacill_phi105_NC_048631: hypothetical protein; FT640_00880; phage(gi100031)9.87e-11Showinfo_outline
8148819..149964PHAGE_Bacill_vB_BtS_B83_NC_048762: hypothetical protein; FT640_00885; phage(gi100038)4.54e-11Showinfo_outline
9149966..150100ABC transporter ATP-binding protein; FT640_008900.0Showinfo_outline
10150243..150425hypothetical protein; FT640_008950.0Showinfo_outline
11complement(150422..150778)PHAGE_Bacill_WBeta_NC_007734: helix-turn-helix Cro and cI family protein; FT640_00900; phage(gi85701408)9.07e-18Showinfo_outline
12150947..151141PHAGE_Bacill_PfEFR_4_NC_048641: u-spanin; FT640_00905; phage(gi100032)7.60e-09Showinfo_outline
13151250..151450PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; FT640_00910; phage(gi100039)1.45e-11Showinfo_outline
14151701..151886PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FT640_00915; phage(gi100036)7.15e-28Showinfo_outline
15151883..152755PHAGE_Bacill_BceA1_NC_048628: DNA adenine methyltransferase; FT640_00920; phage(gi100041)4.07e-70Showinfo_outline
16152724..153527PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FT640_00925; phage(gi100038)0.0Showinfo_outline
17153542..153736PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FT640_00930; phage(gi100039)1.49e-32Showinfo_outline
18153762..153935PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FT640_00935; phage(gi100040)3.92e-33Showinfo_outline
19153950..154204PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; FT640_00940; phage(gi100014)8.91e-54Showinfo_outline
20154217..154642PHAGE_Bacill_250_NC_029024: hypothetical protein; FT640_00945; phage(gi971766652)3.01e-28Showinfo_outline
21154658..155113PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; FT640_00950; phage(gi100062)3.66e-28Showinfo_outline
22155151..155339PHAGE_Geobac_E3_NC_029073: hypothetical protein; FT640_00955; phage(gi985758505)4.02e-07Showinfo_outline
23155795..155981hypothetical protein; FT640_009600.0Showinfo_outline
24156182..156364hypothetical protein; FT640_009650.0Showinfo_outline
25complement(156516..157085)PHAGE_Bacill_WBeta_NC_007734: putative mannose 6-phosphate isomerase; FT640_00970; phage(gi85701420)1.98e-106Showinfo_outline
26157506..157772hypothetical protein; FT640_009750.0Showinfo_outline
27157769..157984PHAGE_Lister_LP_HM00113468_NC_049900: hypothetical protein; FT640_00980; phage(gi100027)1.70e-06Showinfo_outline
28157994..158308PHAGE_Bacill_Shbh1_NC_030925: holin; FT640_00985; phage(gi100034)2.01e-22Showinfo_outline
29158427..158702PHAGE_Bacill_PfEFR_4_NC_048641: tail length tape-measure protein; FT640_00990; phage(gi100057)2.09e-43Showinfo_outline
30159239..159568permease; FT640_009950.0Showinfo_outline
31159586..159708PHAGE_Bacill_Gamma_NC_007458: conserved phage protein; FT640_01000; phage(gi77020188)9.05e-06Showinfo_outline
32160023..160505PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; FT640_01005; phage(gi31415839)9.38e-116Showinfo_outline
33160505..161047PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FT640_01010; phage(gi100061)1.14e-61Showinfo_outline
34161261..162211nucleoside hydrolase; FT640_010150.0Showinfo_outline
35163003..163194PHAGE_Bacill_WBeta_NC_007734: hypothetical protein; FT640_01020; phage(gi85701430)3.43e-28Showinfo_outline
36163194..163394hypothetical protein; FT640_010250.0Showinfo_outline
37complement(163391..163789)hypothetical protein; FT640_010300.0Showinfo_outline
38163870..164124PHAGE_Bacill_PfEFR_4_NC_048641: methyltransferase type 11; FT640_01035; phage(gi100001)1.74e-18Showinfo_outline
39164148..164360PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FT640_01040; phage(gi100065)7.07e-39Showinfo_outline
40164492..164866PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: putative single-stranded DNA binding protein; FT640_01045; phage(gi100050)8.41e-14Showinfo_outline
41164832..165167PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; FT640_01050; phage(gi100004)5.62e-39Showinfo_outline
42165291..165602PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; FT640_01055; phage(gi100005)1.63e-25Showinfo_outline
43165599..167266PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; FT640_01060; phage(gi100006)0.0Showinfo_outline
44167275..168420PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; FT640_01065; phage(gi100007)0.0Showinfo_outline
45168420..169163PHAGE_Staphy_phi2958PVL_NC_011344: prohead protease; FT640_01070; phage(gi209363589)4.00e-38Showinfo_outline
46169167..170321PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; FT640_01075; phage(gi100009)6.75e-124Showinfo_outline
47170327..170620PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; FT640_01080; phage(gi100011)8.47e-45Showinfo_outline
48170622..170975PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; FT640_01085; phage(gi100012)3.38e-31Showinfo_outline
49170977..171318PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; FT640_01090; phage(gi100011)1.56e-19Showinfo_outline
50171318..171647PHAGE_Bacill_1_NC_009737: putative aminopeptidase; FT640_01095; phage(gi155042942)2.38e-29Showinfo_outline
51171648..172241PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; FT640_01100; phage(gi100009)1.98e-49Showinfo_outline
52172248..172604PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; FT640_01105; phage(gi100008)6.40e-09Showinfo_outline
53172835..176467PHAGE_Paenib_PBL1c_NC_048689: hypothetical protein; FT640_01110; phage(gi100014)7.68e-130Showinfo_outline
54176509..177990PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FT640_01115; phage(gi100018)0.0Showinfo_outline
55177987..181922PHAGE_Bacill_WBeta_NC_007734: putative minor structural protein; FT640_01120; phage(gi85701394)0.0Showinfo_outline
56182016..182252PHAGE_Bacill_phBC6A51_NC_004820: XpaF1 protein; FT640_01125; phage(gi31415801)2.50e-45Showinfo_outline
57182252..182491PHAGE_Paenib_Likha_NC_048693: hypothetical protein; FT640_01130; phage(gi100022)3.52e-12Showinfo_outline
58182488..183555PHAGE_Bacill_phBC6A51_NC_004820: N-acetylmuramoyl-L-alanine amidase; FT640_01135; phage(gi31415803)0.0Showinfo_outline
59183685..184002hypothetical protein; FT640_011400.0Showinfo_outline
60complement(184418..184615)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FT640_01145; phage(gi100025)2.24e-24Showinfo_outline
61184778..185080PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; FT640_01150; phage(gi85701399)5.85e-64Showinfo_outline
62185084..185266PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; FT640_01155; phage(gi31415810)9.72e-29Showinfo_outline
63185384..186565PHAGE_Bacill_Gamma_NC_007458: FtsK/SpoIIIE family protein; FT640_01160; phage(gi77020190)0.0Showinfo_outline
64186507..187124PHAGE_Bacill_Gamma_NC_007458: conserved phage protein; FT640_01165; phage(gi77020183)6.80e-123Showinfo_outline
65187409..187909DUF177 domain-containing protein; FT640_011700.0Showinfo_outline
66187971..18814450S ribosomal protein L32; FT640_011750.0Showinfo_outline
67188274..188780PHAGE_Bacill_Stills_NC_028777: hypothetical protein; FT640_01180; phage(gi100026)3.03e-05Showinfo_outline
68189534..189545attR0.0Showinfo_outline
69189580..189591attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 359048 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download