Submission Results

Sequence Name: Not Available

GenBank Accession Number: VRLO01000004.1

GenInfo (GI) Number: 0000000000

Download Results: VRLO01000004.1.PHASTER.zip

gi|00000000|ref|VRLO01000004.1| Enterococcus gallinarum strain S52016 288028, gc%: 39.88%

Download summary as .txt file: summary.txt file_download

Total: 2 prophage regions have been identified, of which 1 regions are intact, 1 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
139.9Kbintact1105422626-62591 info_outlinePHAGE_Bacill_BCJA1c_NC_006557(8)37.65%Show info_outline
234.3Kbincomplete604586964-121316 info_outlinePHAGE_Lister_B025_NC_009812(10)37.36%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|VRLO01000004.1| Enterococcus gallinarum strain S52016 288028, gc%: 39.88%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 58 CDS

#CDS PositionBLAST HitE-ValueSequence
122626..24428PHAGE_Entero_vB_IME197_NC_028671: glycerophosphoryl diester phosphodiesterase; FSZ06_05645; phage(gi966199029)2.21e-06Showinfo_outline
2complement(24547..24753)hypothetical protein; FSZ06_056500.0Showinfo_outline
325386..25398attL0.0Showinfo_outline
425499..25858iron-containing alcohol dehydrogenase family protein; FSZ06_056550.0Showinfo_outline
525855..26121hypothetical protein; FSZ06_056600.0Showinfo_outline
626042..26311PHAGE_Entero_EFC_1_NC_025453: hypothetical protein; FSZ06_05665; phage(gi725950571)1.79e-07Showinfo_outline
7complement(26325..27215)hypothetical protein; FSZ06_056700.0Showinfo_outline
8complement(27212..27787)PHAGE_Erwini_vB_EhrS_59_NC_048198: tail assembly protein; FSZ06_05675; phage(gi100053)4.12e-07Showinfo_outline
928464..29267PHAGE_Staphy_MCE_2014_NC_025416: glycerophosphoryl diester phosphodiesterase; FSZ06_05680; phage(gi725948760)5.51e-23Showinfo_outline
10complement(29309..30112)PHAGE_Lactoc_bIL285_NC_002666: lysin; FSZ06_05685; phage(gi13095742)2.45e-118Showinfo_outline
11complement(30188..30562)PHAGE_Entero_vB_EfaP_Ef7.2_NC_049934: hypothetical protein; FSZ06_05690; phage(gi100021)3.51e-20Showinfo_outline
12complement(30594..30800)hypothetical protein; FSZ06_056950.0Showinfo_outline
13complement(30800..32773)PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; FSZ06_05700; phage(gi100024)3.20e-157Showinfo_outline
14complement(32822..34252)PHAGE_Lactoc_Phi19.3_NC_049356: hypothetical protein; FSZ06_05705; phage(gi100011)9.10e-13Showinfo_outline
15complement(34284..35090)hypothetical protein; FSZ06_057100.0Showinfo_outline
16complement(35150..35968)PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; FSZ06_05715; phage(gi100019)8.57e-26Showinfo_outline
17complement(35970..39455)PHAGE_Strept_phiARI0468_4_NC_031915: hypothetical protein; FSZ06_05720; phage(gi100006)9.44e-93Showinfo_outline
18complement(39448..40026)PHAGE_Strept_phiARI0468_4_NC_031915: hypothetical protein; FSZ06_05725; phage(gi100007)1.36e-40Showinfo_outline
19complement(40036..40479)PHAGE_Strept_phiARI0468_4_NC_031915: hypothetical protein; FSZ06_05730; phage(gi100008)1.42e-18Showinfo_outline
20complement(40525..40839)PHAGE_Entero_phiFL4A_NC_013644: hypothetical protein; FSZ06_05735; phage(gi281416479)1.56e-25Showinfo_outline
21complement(40865..41323)PHAGE_Strept_phiARI0468_4_NC_031915: hypothetical protein; FSZ06_05740; phage(gi100009)1.16e-29Showinfo_outline
22complement(41323..41730)PHAGE_Lactob_phig1e_NC_004305: minor capsid protein; FSZ06_05745; phage(gi23455807)2.52e-28Showinfo_outline
23complement(41730..42059)PHAGE_Strept_phiARI0468_4_NC_031915: hypothetical protein; FSZ06_05750; phage(gi100011)4.34e-22Showinfo_outline
24complement(42059..42397)hypothetical protein; FSZ06_057550.0Showinfo_outline
25complement(42397..42786)PHAGE_Bacill_BCJA1c_NC_006557: hypothetical protein; FSZ06_05760; phage(gi56694910)3.94e-27Showinfo_outline
26complement(42816..43061)PHAGE_Lactoc_98201_NC_031064: hypothetical protein; FSZ06_05765; phage(gi100036)7.40e-26Showinfo_outline
27complement(43073..43933)PHAGE_Lactob_phiJB_NC_022775: major capsid protein; FSZ06_05770; phage(gi571797882)5.58e-130Showinfo_outline
28complement(43936..44502)PHAGE_Lactob_phig1e_NC_004305: minor capsid protein; FSZ06_05775; phage(gi23455803)1.90e-21Showinfo_outline
29complement(44625..45773)PHAGE_Lister_LP_030_3_NC_024384: minor capsid protein; FSZ06_05780; phage(gi658607664)7.25e-54Showinfo_outline
30complement(45778..47328)PHAGE_Strept_phiARI0468_4_NC_031915: hypothetical protein; FSZ06_05785; phage(gi100021)1.52e-132Showinfo_outline
31complement(47304..48617)PHAGE_Strept_phiARI0468_4_NC_031915: hypothetical protein; FSZ06_05790; phage(gi100022)0.0Showinfo_outline
32complement(48610..49365)PHAGE_Aeriba_AP45_NC_048651: hypothetical protein; FSZ06_05795; phage(gi100038)7.26e-61Showinfo_outline
33complement(49447..50037)PHAGE_Lactob_KC5a_NC_007924: hypothetical protein; FSZ06_05800; phage(gi90592606)6.83e-42Showinfo_outline
34complement(50172..50244)tRNA0.0Showinfo_outline
35complement(50349..50422)tRNA0.0Showinfo_outline
36complement(50652..51065)PHAGE_Entero_phiFL1A_NC_013646: transcriptional regulator ArpU family; FSZ06_05815; phage(gi281416357)1.00e-61Showinfo_outline
37complement(51349..51537)hypothetical protein; FSZ06_058200.0Showinfo_outline
38complement(51527..51904)PHAGE_Strept_315.1_NC_004584: hypothetical protein; FSZ06_05825; phage(gi28876160)1.19e-15Showinfo_outline
3952205..52414PHAGE_Staphy_3MRA_NC_028917: hypothetical protein; FSZ06_05830; phage(gi971755517)2.58e-21Showinfo_outline
40complement(52677..52862)PHAGE_Clostr_phiCT453A_NC_028991: hypothetical protein; FSZ06_05835; phage(gi100005)1.27e-08Showinfo_outline
41complement(53295..53501)PHAGE_Clostr_CDKM9_NC_048642: tail assembly protein; FSZ06_05840; phage(gi100053)4.33e-08Showinfo_outline
42complement(53563..53841)PHAGE_Entero_EF62phi_NC_017732: hypothetical protein; FSZ06_05845; phage(gi384519776)1.61e-22Showinfo_outline
43complement(53853..54260)PHAGE_Strept_phiARI0462_NC_031942: hypothetical protein; FSZ06_05850; phage(gi100031)6.41e-34Showinfo_outline
44complement(54260..55195)PHAGE_Entero_phiFL1A_NC_013646: recombinase; FSZ06_05855; phage(gi281416341)1.12e-35Showinfo_outline
45complement(55234..56145)PHAGE_Entero_phiFL1A_NC_013646: RecT family protein; FSZ06_05860; phage(gi281416340)1.19e-126Showinfo_outline
46complement(56147..57088)PHAGE_Entero_phiFL1A_NC_013646: endonuclease YqaJ superfamily; FSZ06_05865; phage(gi281416339)3.04e-177Showinfo_outline
47complement(57240..57431)hypothetical protein; FSZ06_058700.0Showinfo_outline
48complement(57435..57683)PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; FSZ06_05875; phage(gi22855124)1.91e-05Showinfo_outline
49complement(57690..58238)PHAGE_Lactob_PLE3_NC_031125: DNA adenine methyltransferase; FSZ06_05880; phage(gi100041)3.08e-08Showinfo_outline
50complement(58303..58557)hypothetical protein; FSZ06_058850.0Showinfo_outline
5158633..58854PHAGE_Lister_vB_LmoS_188_NC_028871: hypothetical protein; FSZ06_05890; phage(gi971750832)3.99e-18Showinfo_outline
52complement(58856..59200)PHAGE_Lister_vB_LmoS_293_NC_028929: hypothetical protein; FSZ06_05895; phage(gi971756915)4.09e-08Showinfo_outline
53complement(59194..59424)PHAGE_Faecal_FP_Brigit_NC_047909: hypothetical protein; FSZ06_05900; phage(gi100003)8.23e-09Showinfo_outline
5459585..59908PHAGE_Lister_B054_NC_009813: gp41; FSZ06_05905; phage(gi157325325)1.12e-26Showinfo_outline
5559921..60394PHAGE_Lister_A118_NC_003216: gp35; FSZ06_05910; phage(gi16798818)2.09e-18Showinfo_outline
5660406..61194hypothetical protein; FSZ06_059150.0Showinfo_outline
5761351..62574PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; FSZ06_05920; phage(gi100026)1.65e-97Showinfo_outline
5862591..62603attR0.0Showinfo_outline

Region 2, total 47 CDS

#CDS PositionBLAST HitE-ValueSequence
186964..86975attL0.0Showinfo_outline
2complement(90766..95064)PHAGE_Strept_315.1_NC_004584: tail tapemeasure protein; FSZ06_06070; phage(gi28876187)1.22e-164Showinfo_outline
3complement(95296..95673)hypothetical protein; FSZ06_060750.0Showinfo_outline
4complement(95736..96356)PHAGE_Lister_B025_NC_009812: Tsh; FSZ06_06080; phage(gi157325228)9.90e-25Showinfo_outline
5complement(96388..96783)PHAGE_Lister_B025_NC_009812: gp10; FSZ06_06085; phage(gi157325227)1.03e-24Showinfo_outline
6complement(96780..97178)PHAGE_Strept_phi3396_NC_009018: hypothetical protein; FSZ06_06090; phage(gi126011102)6.78e-21Showinfo_outline
7complement(97175..97555)PHAGE_Lister_B025_NC_009812: gp8; FSZ06_06095; phage(gi157325226)2.12e-32Showinfo_outline
8complement(97536..97814)PHAGE_Lister_B025_NC_009812: gp7; FSZ06_06100; phage(gi157325224)3.37e-11Showinfo_outline
9complement(97818..97940)PHAGE_Lister_vB_LmoS_293_NC_028929: hypothetical protein; FSZ06_06105; phage(gi971756883)3.32e-07Showinfo_outline
10complement(97958..99142)PHAGE_Lister_B025_NC_009812: Cps; FSZ06_06110; phage(gi157325222)4.91e-64Showinfo_outline
11complement(99146..99850)PHAGE_Staphy_vB_SpsS_QT1_NC_048192: hypothetical protein; FSZ06_06115; phage(gi100004)1.23e-38Showinfo_outline
12complement(99837..101006)PHAGE_Lister_B025_NC_009812: gp3; FSZ06_06120; phage(gi157325220)1.43e-101Showinfo_outline
13complement(101444..101761)hypothetical protein; FSZ06_061250.0Showinfo_outline
14complement(101778..103460)PHAGE_Lister_B025_NC_009812: putative terminase large subunit; FSZ06_06130; phage(gi157325219)0.0Showinfo_outline
15complement(103457..103768)PHAGE_Lister_B025_NC_009812: gp1; FSZ06_06135; phage(gi157325218)2.96e-15Showinfo_outline
16complement(103951..104265)PHAGE_Lister_B025_NC_009812: gp65; FSZ06_06140; phage(gi157325282)2.76e-25Showinfo_outline
17complement(104262..104591)hypothetical protein; FSZ06_061450.0Showinfo_outline
18complement(104629..105132)hypothetical protein; FSZ06_061500.0Showinfo_outline
19complement(105224..105727)hypothetical protein; FSZ06_061550.0Showinfo_outline
20complement(106019..106489)PHAGE_Lactob_iA2_NC_028830: sigma-70 RNA polymerase; FSZ06_06160; phage(gi971747677)1.15e-29Showinfo_outline
21complement(106812..107019)hypothetical protein; FSZ06_061650.0Showinfo_outline
22107093..107782PHAGE_Strept_315.2_NC_004585: hypothetical protein; FSZ06_06170; phage(gi28876258)4.35e-40Showinfo_outline
23108044..108352hypothetical protein; FSZ06_061750.0Showinfo_outline
24complement(108430..108885)PHAGE_Entero_phiFL2A_NC_013643: DNA cytosine methyltransferase; FSZ06_06180; phage(gi281416514)2.84e-77Showinfo_outline
25complement(108882..109637)PHAGE_Strept_9873_NC_047763: putative transcriptional regulator; FSZ06_06185; phage(gi100045)2.10e-123Showinfo_outline
26complement(109659..109904)hypothetical protein; FSZ06_061900.0Showinfo_outline
27110302..110820PHAGE_Plankt_PaV_LD_NC_016564: putative acetyltransferase; FSZ06_06195; phage(gi371496157)7.52e-06Showinfo_outline
28complement(111241..111432)hypothetical protein; FSZ06_062000.0Showinfo_outline
29complement(111574..111768)hypothetical protein; FSZ06_062050.0Showinfo_outline
30complement(111755..112351)PHAGE_Lister_B054_NC_009813: gp58; FSZ06_06210; phage(gi157325342)2.63e-13Showinfo_outline
31complement(112376..112585)hypothetical protein; FSZ06_062150.0Showinfo_outline
32complement(112582..113043)PHAGE_Lactoc_bIL286_NC_002667: Orf19; FSZ06_06220; phage(gi13095762)9.87e-21Showinfo_outline
33complement(113047..113886)PHAGE_Lactob_iA2_NC_028830: DNA replication protein; FSZ06_06225; phage(gi971747669)8.65e-36Showinfo_outline
34complement(113972..114703)PHAGE_Lister_vB_LmoS_293_NC_028929: DnaD domain protein; FSZ06_06230; phage(gi971756925)1.98e-55Showinfo_outline
35complement(114716..115546)PHAGE_Strept_315.3_NC_004586: hypothetical protein; FSZ06_06235; phage(gi28876302)3.33e-74Showinfo_outline
36complement(115509..116525)PHAGE_Strept_EJ_1_NC_005294: hypothetical protein; FSZ06_06240; phage(gi39653695)1.65e-75Showinfo_outline
37complement(116528..116731)hypothetical protein; FSZ06_062450.0Showinfo_outline
38complement(116715..117071)hypothetical protein; FSZ06_062500.0Showinfo_outline
39complement(117083..117307)PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; FSZ06_06255; phage(gi281416337)1.54e-19Showinfo_outline
40complement(117731..117925)hypothetical protein; FSZ06_062600.0Showinfo_outline
41complement(117930..118163)DNA-binding protein; FSZ06_062650.0Showinfo_outline
42complement(118174..118365)PHAGE_Lactob_phiadh_NC_000896: hypothetical protein; FSZ06_06270; phage(gi9633012)2.02e-15Showinfo_outline
43118656..118967PHAGE_Lister_B025_NC_009812: gp37; FSZ06_06275; phage(gi157325254)5.91e-24Showinfo_outline
44118985..119389PHAGE_Bacill_BM5_NC_029069: hypothetical protein; FSZ06_06280; phage(gi985757868)4.66e-06Showinfo_outline
45119482..120078DUF4352 domain-containing protein; FSZ06_062850.0Showinfo_outline
46119991..120002attR0.0Showinfo_outline
47120183..121316PHAGE_Lactoc_PLgT_1_NC_031016: capsid decoration protein; FSZ06_06290; phage(gi100066)1.54e-95Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 288028 bps
Phages: 2
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download