Submission Results

Sequence Name: Not Available

GenBank Accession Number: VRTV01000002.1

GenInfo (GI) Number: 0000000000

Download Results: VRTV01000002.1.PHASTER.zip

gi|00000000|ref|VRTV01000002.1| Bacillus amyloliquefaciens strain FUA2153 976417, gc%: 46.83%

Download summary as .txt file: summary.txt file_download

Total: 2 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
134.3Kbquestionable8031752050-786386 info_outlinePHAGE_Bacill_phBC6A52_NC_004821(7)45.58%Show info_outline
285.7Kbintact12089890410-976147 info_outlinePHAGE_Paenib_Tripp_NC_028930(29)47.30%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|VRTV01000002.1| Bacillus amyloliquefaciens strain FUA2153 976417, gc%: 46.83%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 33 CDS

#CDS PositionBLAST HitE-ValueSequence
1752050..752061attL0.0Showinfo_outline
2752063..753094PHAGE_Thermu_P2345_NC_009803: XerD-like integrase; FVD41_10230; phage(gi157265299)2.59e-17Showinfo_outline
3753255..753980PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; FVD41_10235; phage(gi85701405)9.05e-27Showinfo_outline
4complement(754012..754194)hypothetical protein; FVD41_102400.0Showinfo_outline
5complement(754254..754481)PHAGE_Bacter_Lily_NC_028841: Xre-like protein; FVD41_10245; phage(gi971748289)1.35e-11Showinfo_outline
6755077..755415hypothetical protein; FVD41_102500.0Showinfo_outline
7complement(755731..755946)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FVD41_10255; phage(gi9630308)2.27e-07Showinfo_outline
8756066..757241PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; FVD41_10260; phage(gi100003)1.28e-70Showinfo_outline
9757762..758304hypothetical protein; FVD41_102650.0Showinfo_outline
10758342..758668hypothetical protein; FVD41_102700.0Showinfo_outline
11758661..758861hypothetical protein; FVD41_102750.0Showinfo_outline
12759260..760063hypothetical protein; FVD41_102800.0Showinfo_outline
13760179..760412helix-turn-helix transcriptional regulator; FVD41_102850.0Showinfo_outline
14760525..761301hypothetical protein; FVD41_102900.0Showinfo_outline
15761315..761812PHAGE_Bacill_Deep_Purple_NC_048667: hypothetical protein; FVD41_10295; phage(gi100040)2.40e-06Showinfo_outline
16761900..762691PHAGE_Paenib_Tripp_NC_028930: hypothetical protein; FVD41_10300; phage(gi971757046)1.37e-34Showinfo_outline
17763542..764138hypothetical protein; FVD41_103050.0Showinfo_outline
18764299..764715PHAGE_Bacill_phBC6A52_NC_004821: endonuclease; FVD41_10310; phage(gi31415846)2.70e-35Showinfo_outline
19764743..765156PHAGE_Bacill_phBC6A52_NC_004821: Terminase small subunit; FVD41_10315; phage(gi31415847)3.70e-30Showinfo_outline
20765153..766889PHAGE_Bacill_phBC6A52_NC_004821: Terminase large subunit; FVD41_10320; phage(gi31415848)0.0Showinfo_outline
21766894..768081PHAGE_Bacill_phBC6A52_NC_004821: Portal protein; FVD41_10325; phage(gi31415850)2.16e-121Showinfo_outline
22768047..768646PHAGE_Clostr_phi3626_NC_003524: putative prohead protease; FVD41_10330; phage(gi20065968)1.02e-33Showinfo_outline
23768643..769911PHAGE_Bacill_phBC6A52_NC_004821: prohead protease; FVD41_10335; phage(gi31415852)4.51e-104Showinfo_outline
24769895..770155PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; FVD41_10340; phage(gi31415853)1.85e-19Showinfo_outline
25770115..770489PHAGE_Paenib_Harrison_NC_028746: head-tail adaptor protein; FVD41_10345; phage(gi971482318)4.85e-07Showinfo_outline
26770473..770886PHAGE_Bacill_phi105_NC_048631: hypothetical protein; FVD41_10350; phage(gi100011)8.39e-11Showinfo_outline
27770883..771272PHAGE_Bacill_WBeta_NC_007734: conserved structural protein; FVD41_10355; phage(gi85701388)3.28e-08Showinfo_outline
28771265..771873PHAGE_Bacill_WBeta_NC_007734: putative major tail protein; FVD41_10360; phage(gi85701389)1.02e-24Showinfo_outline
29771873..772235PHAGE_Bacill_BM5_NC_029069: hypothetical protein; FVD41_10365; phage(gi985757848)2.79e-06Showinfo_outline
30772241..772420hypothetical protein; FVD41_103700.0Showinfo_outline
31772461..773861PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; FVD41_10375; phage(gi31415859)6.03e-53Showinfo_outline
32776717..777544PHAGE_Lister_vB_LmoS_188_NC_028871: holin-like putative tail component protein; FVD41_10380; phage(gi971750814)3.44e-14Showinfo_outline
33786386..786397attR0.0Showinfo_outline

Region 2, total 93 CDS

#CDS PositionBLAST HitE-ValueSequence
1890410..890421attL0.0Showinfo_outline
2894579..895637PHAGE_Thermu_P7426_NC_009804: phage XerD-like integrase; FVD41_10960; phage(gi157265417)6.30e-18Showinfo_outline
3895784..896731hypothetical protein; FVD41_109650.0Showinfo_outline
4896728..897147PHAGE_Paenib_Tripp_NC_028930: DNA binding-like protein; FVD41_10970; phage(gi971757002)4.68e-34Showinfo_outline
5897534..897857PHAGE_Bacill_vB_BceM_Bc431v3_NC_020873: hypothetical protein; FVD41_10975; phage(gi472437464)1.15e-14Showinfo_outline
6897896..898075hypothetical protein; FVD41_109800.0Showinfo_outline
7898072..898434PHAGE_Bacill_SIOphi_NC_042133: hypothetical protein; FVD41_10985; phage(gi100063)9.43e-14Showinfo_outline
8898431..898781PHAGE_Paenib_Tripp_NC_028930: hypothetical protein; FVD41_10990; phage(gi971757006)4.15e-11Showinfo_outline
9898811..899680PHAGE_Paenib_Tripp_NC_028930: hypothetical protein; FVD41_10995; phage(gi971757037)1.09e-31Showinfo_outline
10900033..900212hypothetical protein; FVD41_110000.0Showinfo_outline
11900205..900984PHAGE_Paenib_Tripp_NC_028930: DNA replication protein; FVD41_11005; phage(gi971757010)6.07e-93Showinfo_outline
12900981..901508hypothetical protein; FVD41_110100.0Showinfo_outline
13901505..902251PHAGE_Pectob_PPWS2_NC_048103: hypothetical protein; FVD41_11015; phage(gi100038)4.79e-06Showinfo_outline
14902251..903645PHAGE_Bacill_Mgbh1_NC_041879: exonuclease; FVD41_11020; phage(gi100048)2.42e-127Showinfo_outline
15903780..904775PHAGE_Paenib_Tripp_NC_028930: DNA primase; FVD41_11025; phage(gi971757012)1.29e-69Showinfo_outline
16complement(904792..905037)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FVD41_11030; phage(gi9630214)7.77e-14Showinfo_outline
17905187..906413PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; FVD41_11035; phage(gi85701407)6.62e-78Showinfo_outline
18906514..906525attL0.0Showinfo_outline
19906723..907331PHAGE_Bacill_Mgbh1_NC_041879: tail fiber protein; FVD41_11040; phage(gi100052)5.27e-20Showinfo_outline
20907626..908192hypothetical protein; FVD41_110450.0Showinfo_outline
21908430..909185PHAGE_Paenib_Tripp_NC_028930: single-stranded DNA-binding protein; FVD41_11050; phage(gi971757015)1.92e-64Showinfo_outline
22909220..909654PHAGE_Paenib_Tripp_NC_028930: hypothetical protein; FVD41_11055; phage(gi971757019)3.34e-31Showinfo_outline
23909655..910932PHAGE_Paenib_Tripp_NC_028930: hypothetical protein; FVD41_11060; phage(gi971757022)3.26e-06Showinfo_outline
24910922..911101hypothetical protein; FVD41_110650.0Showinfo_outline
25911309..914095PHAGE_Paenib_Tripp_NC_028930: DNA polymerase; FVD41_11070; phage(gi971757023)1.03e-105Showinfo_outline
26914096..914392hypothetical protein; FVD41_110750.0Showinfo_outline
27914389..915447PHAGE_Paenib_Tripp_NC_028930: hypothetical protein; FVD41_11080; phage(gi971757028)8.13e-97Showinfo_outline
28915698..916231PHAGE_Paenib_Tripp_NC_028930: resolvase; FVD41_11085; phage(gi971757029)5.04e-14Showinfo_outline
29916228..916593PHAGE_Staphy_ROSA_NC_007058: ORF033; FVD41_11090; phage(gi66395997)5.84e-20Showinfo_outline
30916599..916844hypothetical protein; FVD41_110950.0Showinfo_outline
31916841..917026hypothetical protein; FVD41_111000.0Showinfo_outline
32917032..917388PHAGE_Bacill_Mgbh1_NC_041879: hypothetical protein; FVD41_11105; phage(gi100062)1.11e-38Showinfo_outline
33917372..918166PHAGE_Bacill_vB_BsuM_Goe3_NC_048652: hypothetical protein; FVD41_11110; phage(gi100117)2.12e-154Showinfo_outline
34918318..919049PHAGE_Bacill_SPG24_NC_030903: hypothetical protein; FVD41_11115; phage(gi100024)4.91e-116Showinfo_outline
35919111..920427PHAGE_Bacill_SIOphi_NC_042133: hypothetical protein; FVD41_11120; phage(gi100179)0.0Showinfo_outline
36920607..921572PHAGE_Bacill_SP_10_NC_019487: ribonucleoside reductase beta subunit; FVD41_11125; phage(gi418489619)0.0Showinfo_outline
37921795..922337PHAGE_Bacill_250_NC_029024: deoxyuridine 5'-triphosphate nucleotidohydrolase; FVD41_11130; phage(gi971766646)1.19e-54Showinfo_outline
38922338..922562PHAGE_Bacill_SIOphi_NC_042133: hypothetical protein; FVD41_11135; phage(gi100178)5.62e-16Showinfo_outline
39922559..923254PHAGE_Bacill_Taylor_NC_041858: HNH endonuclease; FVD41_11140; phage(gi100046)1.56e-112Showinfo_outline
40923281..923847PHAGE_Bacill_Mgbh1_NC_041879: hypothetical protein; FVD41_11145; phage(gi100076)9.28e-37Showinfo_outline
41923863..924060PHAGE_Bacill_vB_BsuM_Goe3_NC_048652: hypothetical protein; FVD41_11150; phage(gi100210)9.28e-08Showinfo_outline
42924061..924843hypothetical protein; FVD41_111550.0Showinfo_outline
43924840..925406PHAGE_Bacill_B5S_NC_047736: hypothetical protein; FVD41_11160; phage(gi100017)9.04e-48Showinfo_outline
44925403..926350PHAGE_Thermu_P7426_NC_009804: C5 cytosine-specific DNA methylase; FVD41_11165; phage(gi157265426)2.35e-48Showinfo_outline
45complement(926326..926724)PHAGE_Paenib_Tripp_NC_028930: hypothetical protein; FVD41_11170; phage(gi971757039)3.00e-05Showinfo_outline
46926804..927193PHAGE_Paenib_Tripp_NC_028930: SigK-like protein; FVD41_11175; phage(gi971757041)2.04e-22Showinfo_outline
47927123..927674PHAGE_Paenib_Tripp_NC_028930: hypothetical protein; FVD41_11180; phage(gi971757042)1.34e-25Showinfo_outline
48927762..928562PHAGE_Paenib_Tripp_NC_028930: hypothetical protein; FVD41_11185; phage(gi971757046)1.54e-92Showinfo_outline
49complement(928889..929701)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FVD41_11190; phage(gi9630242)1.57e-122Showinfo_outline
50complement(929793..930152)hypothetical protein; FVD41_111950.0Showinfo_outline
51complement(930167..930346)hypothetical protein; FVD41_112000.0Showinfo_outline
52complement(930477..930914)PHAGE_Bacill_PM1_NC_020883: hypothetical protein; FVD41_11205; phage(gi472438291)3.25e-29Showinfo_outline
53complement(931020..931220)hypothetical protein; FVD41_112100.0Showinfo_outline
54931688..931918PHAGE_Bacill_Mater_NC_027366: tail assembly protein; FVD41_11215; phage(gi100053)1.49e-11Showinfo_outline
55932009..932782PHAGE_Bacill_BM5_NC_029069: hypothetical protein; FVD41_11220; phage(gi985757886)7.95e-85Showinfo_outline
56933998..934279PHAGE_Mycoba_Tortellini_NC_041888: hypothetical protein; FVD41_11225; phage(gi100064)1.18e-24Showinfo_outline
57934882..935172PHAGE_Paenib_Tripp_NC_028930: hypothetical protein; FVD41_11230; phage(gi971757045)3.19e-07Showinfo_outline
58935172..935468hypothetical protein; FVD41_112350.0Showinfo_outline
59complement(935673..936221)PHAGE_Bacill_BtCS33_NC_018085: integrase; FVD41_11240; phage(gi392972759)1.63e-45Showinfo_outline
60936304..938058PHAGE_Paenib_Tripp_NC_028930: terminase large subunit; FVD41_11245; phage(gi971756961)7.20e-125Showinfo_outline
61938075..938506PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; FVD41_11250; phage(gi31415784)5.20e-35Showinfo_outline
62938509..940140PHAGE_Paenib_Tripp_NC_028930: portal protein; FVD41_11255; phage(gi971756962)7.37e-62Showinfo_outline
63940140..940964PHAGE_Paenib_Tripp_NC_028930: minor capsid protein; FVD41_11260; phage(gi971756963)4.73e-96Showinfo_outline
64941055..941726PHAGE_Paenib_Tripp_NC_028930: scaffold protein; FVD41_11265; phage(gi971756965)1.82e-32Showinfo_outline
65941738..942841PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; FVD41_11270; phage(gi31415788)1.66e-115Showinfo_outline
66943004..943147PHAGE_Staphy_StB27_NC_019914: tail protein; FVD41_11275; phage(gi431809725)1.17e-06Showinfo_outline
67943150..943368hypothetical protein; FVD41_112800.0Showinfo_outline
68943384..943770PHAGE_Paenib_Tripp_NC_028930: hypothetical protein; FVD41_11285; phage(gi971756967)2.34e-27Showinfo_outline
69943786..944106PHAGE_Paenib_Tripp_NC_028930: hypothetical protein; FVD41_11290; phage(gi971756968)1.74e-24Showinfo_outline
70944103..944510PHAGE_Paenib_Tripp_NC_028930: hypothetical protein; FVD41_11295; phage(gi971756969)3.26e-42Showinfo_outline
71944517..944906PHAGE_Paenib_Tripp_NC_028930: hypothetical protein; FVD41_11300; phage(gi971756970)2.66e-27Showinfo_outline
72944931..945485PHAGE_Paenib_Tripp_NC_028930: hypothetical protein; FVD41_11305; phage(gi971756971)1.19e-62Showinfo_outline
73945544..945915PHAGE_Paenib_Tripp_NC_028930: hypothetical protein; FVD41_11310; phage(gi971756972)2.29e-23Showinfo_outline
74946011..946247PHAGE_Paenib_Tripp_NC_028930: hypothetical protein; FVD41_11315; phage(gi971756973)5.17e-05Showinfo_outline
75946248..946856PHAGE_Paenib_Tripp_NC_028930: tape measure; FVD41_11320; phage(gi971756974)1.03e-38Showinfo_outline
76947105..949327PHAGE_Paenib_Tripp_NC_028930: tape measure; FVD41_11325; phage(gi971756974)1.76e-110Showinfo_outline
77949334..950758PHAGE_Lister_vB_LmoS_188_NC_028871: holin-like putative tail component protein; FVD41_11330; phage(gi971750814)1.06e-42Showinfo_outline
78950770..952170PHAGE_Geobac_E2_NC_009552: putative minor structural protein; FVD41_11335; phage(gi148747747)6.37e-43Showinfo_outline
79952185..954749PHAGE_Bacill_phi105_NC_048631: hypothetical protein; FVD41_11340; phage(gi100019)0.0Showinfo_outline
80954795..956345PHAGE_Bacill_PM1_NC_020883: hypothetical protein; FVD41_11345; phage(gi472438325)1.59e-77Showinfo_outline
81956360..956629PHAGE_Bacill_PM1_NC_020883: hypothetical protein; FVD41_11350; phage(gi472438326)2.57e-13Showinfo_outline
82956630..956818PHAGE_Bacill_PM1_NC_020883: hypothetical protein; FVD41_11355; phage(gi472438327)3.72e-10Showinfo_outline
83956822..957031PHAGE_Bacill_SPbeta_NC_001884: possibly involved in bacteriocin production or immunity; FVD41_11360; phage(gi9630150)3.74e-21Showinfo_outline
84957112..958050PHAGE_Bacill_phi105_NC_048631: hypothetical protein; FVD41_11365; phage(gi100024)1.15e-116Showinfo_outline
85958071..958328PHAGE_Staphy_IME_SA4_NC_029025: holin; FVD41_11370; phage(gi971766707)1.29e-06Showinfo_outline
86958421..958981hypothetical protein; FVD41_113750.0Showinfo_outline
87complement(958997..959332)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FVD41_11380; phage(gi9630141)1.40e-16Showinfo_outline
88complement(959392..959598)PHAGE_Bacill_SIOphi_NC_042133: hypothetical protein; FVD41_11385; phage(gi100114)4.63e-11Showinfo_outline
89959735..960526PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; FVD41_11390; phage(gi85701405)2.66e-19Showinfo_outline
90complement(960829..961032)hypothetical protein; FVD41_113950.0Showinfo_outline
91961420..962550PHAGE_Bacill_phi105_NC_048631: hypothetical protein; FVD41_11400; phage(gi100028)3.78e-25Showinfo_outline
92971771..971782attR0.0Showinfo_outline
93976147..976158attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 976417 bps
Phages: 2
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Click on a sequence to see details.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download