Submission Results

Sequence Name: Not Available

GenBank Accession Number: VSSM01000001.1

GenInfo (GI) Number: 0000000000

Download Results: VSSM01000001.1.PHASTER.zip

gi|00000000|ref|VSSM01000001.1| Bacillus cereus strain ET31 NODE_1, whole genome shotgun sequence. 2021752, gc%: 35.33%

Download summary as .txt file: summary.txt file_download

Total: 2 prophage regions have been identified, of which 1 regions are intact, 1 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
127.1Kbincomplete2040858-28003 info_outlinePHAGE_Bacill_phBC6A51_NC_004820(30)37.93%Show info_outline
225.5Kbintact11034985122-1010644 info_outlinePHAGE_Geobac_GBSV1_NC_008376(6)35.57%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|VSSM01000001.1| Bacillus cereus strain ET31 NODE_1, whole genome shotgun sequence. 2021752, gc%: 35.33%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 40 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(858..1046)PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; FXB61_000002; phage(gi31415780)7.92e-20Showinfo_outline
2complement(1043..1240)PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; FXB61_000003; phage(gi31415779)2.68e-40Showinfo_outline
3complement(1242..1523)PHAGE_Bacill_phBC6A51_NC_004820: Transcription state regulatory protein abrB; FXB61_000004; phage(gi31415778)2.55e-56Showinfo_outline
4complement(1544..1639)hypothetical protein; FXB61_0000050.0Showinfo_outline
5complement(1650..1796)PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; FXB61_000006; phage(gi31415775)4.24e-24Showinfo_outline
6complement(1799..2650)PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; FXB61_000007; phage(gi31415774)7.30e-177Showinfo_outline
7complement(2667..2984)PHAGE_Bacill_phBC6A51_NC_004820: Transglycosylase; FXB61_000008; phage(gi31415773)4.10e-67Showinfo_outline
8complement(3158..3625)PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; FXB61_000009; phage(gi31415770)5.90e-73Showinfo_outline
94478..5050PHAGE_Bacill_WBeta_NC_007734: putative mannose 6-phosphate isomerase; FXB61_000010; phage(gi85701420)4.97e-111Showinfo_outline
10complement(5511..6926)PHAGE_Bacill_WBeta_NC_007734: collagen triple helix repeat protein; FXB61_000011; phage(gi85701419)0.0Showinfo_outline
11complement(7340..8119)PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; FXB61_000012; phage(gi31415763)5.53e-179Showinfo_outline
12complement(8131..8670)PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; FXB61_000013; phage(gi31415762)1.37e-63Showinfo_outline
13complement(8667..8969)PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; FXB61_000014; phage(gi31415761)7.39e-64Showinfo_outline
14complement(8986..9351)PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; FXB61_000015; phage(gi31415760)6.40e-61Showinfo_outline
15complement(9377..9637)PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; FXB61_000016; phage(gi31415759)1.40e-47Showinfo_outline
16complement(9597..9872)hypothetical protein; FXB61_0000170.0Showinfo_outline
17complement(9876..10397)PHAGE_Bacill_phBC6A51_NC_004820: DNA polymerase I; FXB61_000018; phage(gi31415758)7.16e-117Showinfo_outline
18complement(10491..10928)PHAGE_Pectob_phiTE_NC_020201: hypothetical protein; FXB61_000019; phage(gi448244751)2.21e-10Showinfo_outline
19complement(11090..12949)PHAGE_Bacill_phBC6A51_NC_004820: DNA polymerase I; FXB61_000020; phage(gi31415758)0.0Showinfo_outline
20complement(12991..16077)PHAGE_Bacill_phBC6A51_NC_004820: MCM domain family protein; FXB61_000021; phage(gi31415757)0.0Showinfo_outline
21complement(16097..16831)PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; FXB61_000022; phage(gi31415756)1.14e-162Showinfo_outline
22complement(16831..17073)hypothetical protein; FXB61_0000230.0Showinfo_outline
23complement(17163..18842)PHAGE_Bacill_phBC6A51_NC_004820: DNA/RNA helicase (DEAD/DEAH box family); FXB61_000024; phage(gi31415755)0.0Showinfo_outline
24complement(18824..19342)PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; FXB61_000025; phage(gi31415754)2.90e-123Showinfo_outline
25complement(19352..19903)PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; FXB61_000026; phage(gi31415753)2.06e-98Showinfo_outline
26complement(19896..20198)PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; FXB61_000027; phage(gi31415752)2.37e-68Showinfo_outline
27complement(20195..21253)PHAGE_Bacill_phBC6A51_NC_004820: Exonuclease SbcD; FXB61_000028; phage(gi31415751)0.0Showinfo_outline
28complement(21253..21618)PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; FXB61_000029; phage(gi31415750)2.22e-26Showinfo_outline
29complement(21635..22270)PHAGE_Bacill_phBC6A51_NC_004820: Chromosome segregation ATPases; FXB61_000030; phage(gi31415749)4.28e-151Showinfo_outline
30complement(22284..22517)PHAGE_Bacill_phBC6A51_NC_004820: hypothetical Cytosolic Protein; FXB61_000031; phage(gi31415748)6.55e-46Showinfo_outline
31complement(22517..22822)PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; FXB61_000032; phage(gi31415747)3.73e-57Showinfo_outline
32complement(22833..24389)PHAGE_Bacill_phBC6A51_NC_004820: Exonuclease SbcC; FXB61_000033; phage(gi31415746)0.0Showinfo_outline
33complement(24433..24534)hypothetical protein; FXB61_0000340.0Showinfo_outline
34complement(24558..24707)PHAGE_Bacill_Gamma_NC_007458: hypothetical protein; FXB61_000035; phage(gi77020185)2.71e-05Showinfo_outline
35complement(24713..25021)PHAGE_Bacill_phBC6A51_NC_004820: Transcriptional regulator; FXB61_000036; phage(gi31415745)3.55e-22Showinfo_outline
3625321..25659PHAGE_Bacill_phBC6A51_NC_004820: Transcriptional regulator; FXB61_000037; phage(gi31415744)2.56e-77Showinfo_outline
37complement(25682..25855)PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; FXB61_000038; phage(gi31415743)1.05e-33Showinfo_outline
38complement(25979..26113)hypothetical protein; FXB61_0000390.0Showinfo_outline
39complement(26127..27224)PHAGE_Bacill_phBC6A51_NC_004820: Prophage helix-turn-helix protein; FXB61_000040; phage(gi31415742)0.0Showinfo_outline
4027659..28003PHAGE_Bacill_phBC6A51_NC_004820: Transcriptional regulator, MerR family; FXB61_000041; phage(gi31415741)2.39e-66Showinfo_outline

Region 2, total 36 CDS

#CDS PositionBLAST HitE-ValueSequence
1985122..985214PHAGE_Bacill_phi4J1_NC_029008: hypothetical protein; FXB61_000979; phage(gi971821612)1.25e-08Showinfo_outline
2985608..986114hypothetical protein; FXB61_0009800.0Showinfo_outline
3986139..986151attL0.0Showinfo_outline
4complement(986313..987122)PHAGE_Bacill_phBC6A52_NC_004821: N-acetylmuramoyl-L-alanine amidase; FXB61_000981; phage(gi31415865)3.31e-151Showinfo_outline
5complement(987122..987349)PHAGE_Bacill_BeachBum_NC_049961: hypothetical protein; FXB61_000982; phage(gi100022)1.45e-31Showinfo_outline
6complement(987389..987763)PHAGE_Bacill_phi4J1_NC_029008: hypothetical protein; FXB61_000983; phage(gi971821601)1.57e-86Showinfo_outline
7complement(987779..992098)PHAGE_Bacill_phi4J1_NC_029008: tail fiber; FXB61_000984; phage(gi971821625)0.0Showinfo_outline
8complement(992095..993564)PHAGE_Bacill_phi4J1_NC_029008: distal tail protein; FXB61_000985; phage(gi971821575)0.0Showinfo_outline
9complement(993606..994580)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; FXB61_000986; phage(gi31415859)2.47e-116Showinfo_outline
10complement(994553..996025)PHAGE_Bacill_1_NC_009737: TMP repeat protein; FXB61_000987; phage(gi155042946)3.08e-79Showinfo_outline
11complement(996128..996982)PHAGE_Yersin_fHe_Yen9_04_NC_042116: prohead protease; FXB61_000988; phage(gi100299)2.63e-12Showinfo_outline
12complement(997214..998461)PHAGE_Bacill_1_NC_009737: TMP repeat protein; FXB61_000989; phage(gi155042946)2.89e-153Showinfo_outline
13complement(998479..998586)PHAGE_Bacill_1_NC_009737: hypothetical protein; FXB61_000990; phage(gi155042945)5.48e-08Showinfo_outline
14complement(998694..999056)PHAGE_Bacill_1_NC_009737: hypothetical protein; FXB61_000991; phage(gi155042944)1.98e-35Showinfo_outline
15complement(999061..999648)PHAGE_Bacill_1_NC_009737: hypothetical protein; FXB61_000992; phage(gi155042943)6.36e-50Showinfo_outline
16complement(999649..999984)PHAGE_Bacill_1_NC_009737: putative aminopeptidase; FXB61_000993; phage(gi155042942)1.71e-27Showinfo_outline
17complement(999981..1000325)PHAGE_Bacill_1_NC_009737: hypothetical protein; FXB61_000994; phage(gi155042941)1.49e-24Showinfo_outline
18complement(1000327..1000686)PHAGE_Geobac_E2_NC_009552: putative head-tail adaptor; FXB61_000995; phage(gi148747735)2.72e-26Showinfo_outline
19complement(1000679..1000975)PHAGE_Lister_LP_HM00113468_NC_049900: tail tip protein; FXB61_000996; phage(gi100054)1.56e-19Showinfo_outline
20complement(1000988..1002151)PHAGE_Lister_LP_101_NC_024387: major capsid protein; FXB61_000997; phage(gi658607815)2.76e-82Showinfo_outline
21complement(1002171..1002947)PHAGE_Clostr_phiCTC2B_NC_030951: holin; FXB61_000998; phage(gi100034)2.52e-73Showinfo_outline
22complement(1002931..1004067)PHAGE_Lister_LP_101_NC_024387: portal protein; FXB61_000999; phage(gi658607813)5.49e-110Showinfo_outline
23complement(1004103..1005758)PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; FXB61_001000; phage(gi100006)0.0Showinfo_outline
24complement(1005755..1006111)PHAGE_Staphy_23MRA_NC_028775: hypothetical protein; FXB61_001001; phage(gi971742325)5.03e-42Showinfo_outline
25complement(1006264..1006605)PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; FXB61_001002; phage(gi100004)4.54e-41Showinfo_outline
26complement(1006586..1006999)PHAGE_Bacill_WBeta_NC_007734: hypothetical protein; FXB61_001003; phage(gi85701427)2.04e-40Showinfo_outline
27complement(1007013..1007234)hypothetical protein; FXB61_0010040.0Showinfo_outline
28complement(1007227..1007394)PHAGE_Bacill_PfEFR_4_NC_048641: capsid decoration protein; FXB61_001005; phage(gi100066)6.04e-20Showinfo_outline
29complement(1007489..1007683)hypothetical protein; FXB61_0010060.0Showinfo_outline
30complement(1007851..1008018)PHAGE_Bacill_Shbh1_NC_030925: hypothetical protein; FXB61_001007; phage(gi100077)3.81e-10Showinfo_outline
31complement(1008008..1008121)hypothetical protein; FXB61_0010080.0Showinfo_outline
32complement(1008490..1008708)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; FXB61_001009; phage(gi31415842)2.22e-44Showinfo_outline
331009317..1009517PHAGE_Vibrio_1.026.O._10N.222.49.C7_NC_049430: portal protein; FXB61_001010; phage(gi100069)8.60e-09Showinfo_outline
341009549..1009561attR0.0Showinfo_outline
35complement(1009638..1010180)PHAGE_Bacill_phiCM3_NC_023599: integrase; FXB61_001011; phage(gi589892763)5.37e-121Showinfo_outline
36complement(1010180..1010644)PHAGE_Bacill_phiCM3_NC_023599: transcriptional regulator; FXB61_001012; phage(gi589892762)4.49e-76Showinfo_outline
Bacillus cereus strain ET31 NODE_1, whole genome shotgun sequence
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 2021752 bps
Phages: 2
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download