Submission Results

Sequence Name: Not Available

GenBank Accession Number: VSSM01000012.1

GenInfo (GI) Number: 0000000000

Download Results: VSSM01000012.1.PHASTER.zip

gi|00000000|ref|VSSM01000012.1| Bacillus cereus strain ET31 NODE_12, whole genome shotgun 50983, gc%: 36.34%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
150.8Kbintact120728-50845 info_outlinePHAGE_Bacill_IEBH_NC_011167(18)36.35%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|VSSM01000012.1| Bacillus cereus strain ET31 NODE_12, whole genome shotgun 50983, gc%: 36.34%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 72 CDS

#CDS PositionBLAST HitE-ValueSequence
18..235PHAGE_Bacill_vB_BsuM_Goe3_NC_048652: prohead protease; FXB61_005674; phage(gi100150)2.11e-13Showinfo_outline
2264..686PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; FXB61_005675; phage(gi197261547)2.52e-25Showinfo_outline
3885..1031hypothetical protein; FXB61_0056760.0Showinfo_outline
41173..1544PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; FXB61_005677; phage(gi197261550)8.37e-17Showinfo_outline
52509..2694hypothetical protein; FXB61_0056780.0Showinfo_outline
62789..3118PHAGE_Bacill_Grass_NC_022771: hypothetical protein; FXB61_005679; phage(gi568191691)2.52e-30Showinfo_outline
73230..3571hypothetical protein; FXB61_0056800.0Showinfo_outline
8complement(3608..3742)hypothetical protein; FXB61_0056810.0Showinfo_outline
94046..4294hypothetical protein; FXB61_0056820.0Showinfo_outline
104562..4726hypothetical protein; FXB61_0056830.0Showinfo_outline
114769..5713PHAGE_Bacill_IEBH_NC_011167: terminase small subunit; FXB61_005684; phage(gi197261558)4.39e-168Showinfo_outline
125685..7001PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; FXB61_005685; phage(gi100004)0.0Showinfo_outline
137001..8539PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: minor tail protein; FXB61_005686; phage(gi100056)1.04e-107Showinfo_outline
148526..9452PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: tail length tape-measure protein; FXB61_005687; phage(gi100057)3.86e-62Showinfo_outline
159449..9985hypothetical protein; FXB61_0056880.0Showinfo_outline
1610000..11265PHAGE_Lactoc_98201_NC_031064: holin; FXB61_005689; phage(gi100034)5.85e-69Showinfo_outline
1711281..12198PHAGE_Lactoc_28201_NC_031013: holin; FXB61_005690; phage(gi100034)3.01e-54Showinfo_outline
1812217..12408hypothetical protein; FXB61_0056910.0Showinfo_outline
1912401..12631hypothetical protein; FXB61_0056920.0Showinfo_outline
2012645..13037PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; FXB61_005693; phage(gi100061)1.16e-25Showinfo_outline
2113037..13429Phage-like element PBSX protein XkdH; FXB61_0056940.0Showinfo_outline
2213414..13899PHAGE_Bacill_vB_BboS_125_NC_048735: hypothetical protein; FXB61_005695; phage(gi100074)2.08e-13Showinfo_outline
2313903..14304hypothetical protein; FXB61_0056960.0Showinfo_outline
2414320..14793PHAGE_Entero_vB_IME197_NC_028671: major tail protein; FXB61_005697; phage(gi966199020)7.42e-05Showinfo_outline
2514859..15281PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; FXB61_005698; phage(gi31415797)5.81e-12Showinfo_outline
2615615..19307PHAGE_Bacill_IEBH_NC_011167: carbamoyl-phosphate synthase large subunit; FXB61_005699; phage(gi197261572)9.61e-180Showinfo_outline
2719311..20150PHAGE_Lister_vB_LmoS_188_NC_028871: holin-like putative tail component protein; FXB61_005700; phage(gi971750814)3.02e-18Showinfo_outline
2820174..22540PHAGE_Geobac_E2_NC_009552: putative minor structural protein; FXB61_005701; phage(gi148747747)5.06e-44Showinfo_outline
2922552..23685PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; FXB61_005702; phage(gi31415863)4.55e-86Showinfo_outline
3023701..25683PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; FXB61_005703; phage(gi197261575)8.40e-24Showinfo_outline
31complement(25949..27103)PHAGE_Erwini_vB_EhrS_59_NC_048198: hypothetical protein; FXB61_005704; phage(gi100022)4.08e-08Showinfo_outline
3227283..27708PHAGE_Bacill_IEBH_NC_011167: holin; FXB61_005705; phage(gi197261577)1.25e-86Showinfo_outline
3327708..28643PHAGE_Bacill_Waukesha92_NC_025424: endolysin; FXB61_005706; phage(gi712912403)0.0Showinfo_outline
34complement(28675..29028)PHAGE_Staphy_phiRS7_NC_022914: YolD-like protein; FXB61_005707; phage(gi560185985)9.67e-15Showinfo_outline
35complement(29123..29356)PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; FXB61_005708; phage(gi100025)1.36e-29Showinfo_outline
3629658..30956PHAGE_Bacill_1_NC_009737: FtsK/SpoIIIE family protein; FXB61_005709; phage(gi158348423)1.00e-136Showinfo_outline
3731204..31470PHAGE_Bacill_vB_BhaS_171_NC_030904: holin; FXB61_005710; phage(gi100034)4.80e-11Showinfo_outline
3831490..31978PHAGE_Bacill_Taylor_NC_041858: capsid maturation protease; FXB61_005711; phage(gi100067)5.17e-10Showinfo_outline
3932059..32649PHAGE_Bacill_Deep_Purple_NC_048667: hypothetical protein; FXB61_005712; phage(gi100007)1.62e-20Showinfo_outline
40complement(32751..33716)Endonuclease NucS; FXB61_0057130.0Showinfo_outline
41complement(33793..34194)hypothetical protein; FXB61_0057140.0Showinfo_outline
42complement(34209..35039)PHAGE_Lactob_Lb_NC_047983: minor tail protein; FXB61_005715; phage(gi100055)9.17e-47Showinfo_outline
4336641..37324PHAGE_Bacill_BMBtpLA_NC_028748: hypothetical protein; FXB61_005716; phage(gi971482507)1.84e-52Showinfo_outline
44complement(37698..38168)hypothetical protein; FXB61_0057170.0Showinfo_outline
45complement(38381..38716)PHAGE_Aeromo_31_NC_007022: TM2 domain-containing protein; FXB61_005718; phage(gi66391887)2.48e-13Showinfo_outline
46complement(38915..39259)PHAGE_Bacill_IEBH_NC_011167: prophage repressor; FXB61_005719; phage(gi197261591)3.61e-13Showinfo_outline
4739805..40956PHAGE_Bacill_IEBH_NC_011167: helix-turn-helix protein; FXB61_005720; phage(gi197261592)1.12e-22Showinfo_outline
4840997..41143PHAGE_Bacill_BMBtpLA_NC_028748: hypothetical protein; FXB61_005721; phage(gi971482515)8.64e-06Showinfo_outline
4941311..41460hypothetical protein; FXB61_0057220.0Showinfo_outline
50complement(41466..41816)PHAGE_Bacill_Waukesha92_NC_025424: transcriptional regulator; FXB61_005723; phage(gi712912388)1.29e-50Showinfo_outline
5142025..42225PHAGE_Bacill_PfEFR_4_NC_048641: u-spanin; FXB61_005724; phage(gi100032)2.49e-37Showinfo_outline
5242292..43059PHAGE_Bacter_Lily_NC_028841: antirepressor; FXB61_005725; phage(gi971748300)2.72e-69Showinfo_outline
5343060..43176PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; FXB61_005726; phage(gi197261514)4.23e-13Showinfo_outline
5443176..43313PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; FXB61_005727; phage(gi197261515)9.32e-17Showinfo_outline
5543842..44042PHAGE_Bacill_BM5_NC_029069: hypothetical protein; FXB61_005728; phage(gi985757872)8.46e-09Showinfo_outline
5644044..44220hypothetical protein; FXB61_0057290.0Showinfo_outline
5744217..44420hypothetical protein; FXB61_0057300.0Showinfo_outline
5844417..45118PHAGE_Staphy_phi7247PVL_NC_048624: hypothetical protein; FXB61_005731; phage(gi100012)7.07e-48Showinfo_outline
5945133..45309PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; FXB61_005732; phage(gi197261516)8.57e-29Showinfo_outline
6045309..45551hypothetical protein; FXB61_0057330.0Showinfo_outline
6145552..46352PHAGE_Bacill_IEBH_NC_011167: DNA replication protein; FXB61_005734; phage(gi197261518)2.64e-128Showinfo_outline
6246489..47154PHAGE_Bacill_phi4B1_NC_028886: IstB-like ATP binding domain protein; FXB61_005735; phage(gi971821258)9.13e-144Showinfo_outline
6347173..47436PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; FXB61_005736; phage(gi197261521)7.14e-28Showinfo_outline
6447417..47638PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; FXB61_005737; phage(gi100042)9.76e-41Showinfo_outline
6547635..47904PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; FXB61_005738; phage(gi100014)1.45e-38Showinfo_outline
6647915..48466PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; FXB61_005739; phage(gi197261523)2.16e-24Showinfo_outline
6748468..49154PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; FXB61_005740; phage(gi197261526)4.81e-22Showinfo_outline
6849244..49438PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; FXB61_005741; phage(gi197261528)1.32e-28Showinfo_outline
6949505..49759PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; FXB61_005742; phage(gi197261530)3.45e-30Showinfo_outline
7049770..49937PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; FXB61_005743; phage(gi100021)4.54e-11Showinfo_outline
7149951..50397PHAGE_Bacill_IEBH_NC_011167: deoxyuridine 5'-triphosphate nucleotidohydrolase, DUTP; FXB61_005744; phage(gi197261533)1.46e-74Showinfo_outline
7250441..50845PHAGE_Bacill_vB_BtS_B83_NC_048762: hypothetical protein; FXB61_005745; phage(gi100061)1.36e-90Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 50983 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download