Submission Results

Sequence Name: Not Available

GenBank Accession Number: VTEN01000003.1

GenInfo (GI) Number: 0000000000

Download Results: VTEN01000003.1.PHASTER.zip

gi|00000000|ref|VTEN01000003.1| Bacillus pumilus strain CH144a_4T scaffold3.1, whole genome 437432, gc%: 39.58%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 0 regions are intact, 0 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
1105.1Kbquestionable70125332257-437432 info_outlinePHAGE_Bacill_SPbeta_NC_001884(54)34.35%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|VTEN01000003.1| Bacillus pumilus strain CH144a_4T scaffold3.1, whole genome 437432, gc%: 39.58%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 129 CDS

#CDS PositionBLAST HitE-ValueSequence
1332257..332269attL0.0Showinfo_outline
2complement(338777..344071)PHAGE_Bacill_SPbeta_NC_001884: putative transglycosylase; FZC68_10090; phage(gi9630157)0.0Showinfo_outline
3complement(344218..345849)PHAGE_Bacill_SPbeta_NC_001884: putative transglycosylase; FZC68_10095; phage(gi9630157)0.0Showinfo_outline
4345948..346640hypothetical protein; FZC68_101000.0Showinfo_outline
5complement(346709..346921)hypothetical protein; FZC68_101050.0Showinfo_outline
6complement(346918..347619)PHAGE_Bacill_PM1_NC_020883: hypothetical protein; FZC68_10110; phage(gi472438275)5.35e-37Showinfo_outline
7complement(347612..347842)PHAGE_Geobac_E3_NC_029073: hypothetical protein; FZC68_10115; phage(gi985758370)1.76e-05Showinfo_outline
8348041..348250PHAGE_Faecal_FP_Taranis_NC_047914: hypothetical protein; FZC68_10120; phage(gi100085)1.49e-12Showinfo_outline
9348299..348538phosphoenolpyruvate carboxykinase (GTP); FZC68_101250.0Showinfo_outline
10complement(348702..349331)PHAGE_Bacill_SPbeta_NC_001884: immunity protein d; FZC68_10130; phage(gi9630158)6.41e-07Showinfo_outline
11complement(349654..350178)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10135; phage(gi9630159)1.29e-16Showinfo_outline
12complement(350886..351401)type II toxin-antitoxin system PemK/MazF family toxin; FZC68_101400.0Showinfo_outline
13complement(351431..351646)hypothetical protein; FZC68_101450.0Showinfo_outline
14complement(351770..352117)PHAGE_Lister_A500_NC_009810: gp33; FZC68_10150; phage(gi157324992)6.49e-11Showinfo_outline
15complement(352262..353263)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10155; phage(gi9630161)0.0Showinfo_outline
16complement(353283..353705)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10160; phage(gi9630162)2.00e-49Showinfo_outline
17complement(353705..354184)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10165; phage(gi9630163)8.78e-19Showinfo_outline
18complement(354454..354603)PHAGE_Bacill_PM1_NC_020883: hypothetical protein; FZC68_10170; phage(gi472438327)2.79e-09Showinfo_outline
19complement(354604..354876)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10175; phage(gi9630165)5.17e-06Showinfo_outline
20complement(354891..355973)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10180; phage(gi9630166)2.05e-26Showinfo_outline
21complement(355973..356341)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10185; phage(gi9630167)3.13e-22Showinfo_outline
22complement(356383..356958)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10190; phage(gi9630169)9.10e-54Showinfo_outline
23complement(356978..357769)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10195; phage(gi9630170)2.87e-38Showinfo_outline
24complement(357812..358540)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10200; phage(gi9630171)9.98e-46Showinfo_outline
25complement(358534..359049)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10205; phage(gi9630172)1.28e-55Showinfo_outline
26complement(359046..359690)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10210; phage(gi9630173)2.15e-74Showinfo_outline
27complement(359677..359913)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10215; phage(gi9630174)9.46e-17Showinfo_outline
28complement(359910..360311)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10220; phage(gi9630175)3.83e-43Showinfo_outline
29complement(360322..360792)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10225; phage(gi9630176)1.52e-82Showinfo_outline
30complement(360829..361842)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10230; phage(gi9630177)0.0Showinfo_outline
31361854..361865attL0.0Showinfo_outline
32complement(361884..362420)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10235; phage(gi9630178)2.25e-107Showinfo_outline
33complement(362438..363859)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10240; phage(gi9630179)0.0Showinfo_outline
34complement(363897..365372)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10245; phage(gi9630180)0.0Showinfo_outline
35complement(365442..367214)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10250; phage(gi9630181)7.66e-161Showinfo_outline
36complement(367214..368041)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10255; phage(gi9630182)3.27e-57Showinfo_outline
37complement(368121..368708)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10260; phage(gi9630183)2.18e-06Showinfo_outline
38complement(368865..370064)PHAGE_Staphy_vB_SepS_SEP9_NC_023582: exonuclease; FZC68_10265; phage(gi589891431)7.27e-95Showinfo_outline
39complement(370079..370270)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10270; phage(gi9630186)5.39e-25Showinfo_outline
40complement(371422..371697)PHAGE_Bacill_SPbeta_NC_001884: histone-like prokaryotic DNA-binding protein family; FZC68_10275; phage(gi9630187)3.84e-31Showinfo_outline
41complement(371921..374452)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10280; phage(gi9630188)0.0Showinfo_outline
42complement(374465..374644)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10285; phage(gi9630189)1.18e-08Showinfo_outline
43complement(374751..374978)PHAGE_Tenaci_PTm1_NC_049340: DNA-binding transcriptional regulator; FZC68_10290; phage(gi100278)4.31e-05Showinfo_outline
44375206..375403hypothetical protein; FZC68_102950.0Showinfo_outline
45375403..376515PHAGE_Bacill_G_NC_023719: gp138; FZC68_10300; phage(gi593777597)2.07e-38Showinfo_outline
46377961..379193PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10305; phage(gi9630194)0.0Showinfo_outline
47379513..381375PHAGE_Geobac_E3_NC_029073: hypothetical protein; FZC68_10310; phage(gi985758521)9.73e-10Showinfo_outline
48381430..383043PHAGE_Vibrio_12A4_NC_021068: hypothetical protein; FZC68_10315; phage(gi481019131)7.02e-16Showinfo_outline
49383143..383403hypothetical protein; FZC68_103200.0Showinfo_outline
50383415..383627PHAGE_Paenib_Kawika_NC_048715: tail length tape-measure protein; FZC68_10325; phage(gi100057)3.19e-06Showinfo_outline
51383873..384097hypothetical protein; FZC68_103300.0Showinfo_outline
52384176..384367PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10335; phage(gi9630299)1.91e-35Showinfo_outline
53384745..384963PHAGE_Bacill_phiAGATE_NC_020081: hypothetical protein; FZC68_10340; phage(gi448260929)4.95e-23Showinfo_outline
54384966..385151hypothetical protein; FZC68_103450.0Showinfo_outline
55385151..385363PHAGE_Bacill_Bp8p_T_NC_047744: tail fiber protein; FZC68_10350; phage(gi100052)2.46e-13Showinfo_outline
56385380..385748hypothetical protein; FZC68_103550.0Showinfo_outline
57385918..386136hypothetical protein; FZC68_103600.0Showinfo_outline
58386265..386867hypothetical protein; FZC68_103650.0Showinfo_outline
59387961..388140hypothetical protein; FZC68_103700.0Showinfo_outline
60complement(388399..388722)hypothetical protein; FZC68_103750.0Showinfo_outline
61complement(388744..389289)hypothetical protein; FZC68_103800.0Showinfo_outline
62389765..390868ATP-binding protein; FZC68_103850.0Showinfo_outline
63391340..392503PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10390; phage(gi9630206)1.60e-70Showinfo_outline
64392905..393090hypothetical protein; FZC68_103950.0Showinfo_outline
65393103..393411hypothetical protein; FZC68_104000.0Showinfo_outline
66393464..393652helix-turn-helix transcriptional regulator; FZC68_104050.0Showinfo_outline
67393666..394748PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10410; phage(gi9630211)1.10e-94Showinfo_outline
68394832..396220PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10415; phage(gi9630212)2.01e-88Showinfo_outline
69396223..397212PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10420; phage(gi9630213)5.03e-62Showinfo_outline
70complement(397367..397585)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10425; phage(gi9630214)1.29e-13Showinfo_outline
71397772..397990hypothetical protein; FZC68_104300.0Showinfo_outline
72398935..400086PHAGE_Bacill_AR9_NC_031039: hypothetical protein; FZC68_10435; phage(gi100016)1.26e-83Showinfo_outline
73400104..400553PHAGE_Geobac_E3_NC_029073: putative RNaseH; FZC68_10440; phage(gi985758470)9.79e-59Showinfo_outline
74400596..400856hypothetical protein; FZC68_104450.0Showinfo_outline
75400906..403104PHAGE_Staphy_Twort_NC_007021: ORF008; FZC68_10450; phage(gi66391263)0.0Showinfo_outline
76403316..403570hypothetical protein; FZC68_104550.0Showinfo_outline
77403612..404286PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10460; phage(gi9630231)2.22e-75Showinfo_outline
78404315..404707PHAGE_Clostr_phiCD211_NC_029048: hypothetical protein; FZC68_10465; phage(gi981220945)9.47e-32Showinfo_outline
79404741..404935hypothetical protein; FZC68_104700.0Showinfo_outline
80405101..405292PHAGE_Bacill_Mgbh1_NC_041879: HNH endonuclease; FZC68_10475; phage(gi100046)1.34e-21Showinfo_outline
81405536..405850PHAGE_Bacill_BM15_NC_042140: hypothetical protein; FZC68_10480; phage(gi100246)1.16e-05Showinfo_outline
82406062..406244PHAGE_Bacill_phi4J1_NC_029008: toxin-antitoxin system antitoxin component; FZC68_10485; phage(gi971821574)1.18e-10Showinfo_outline
83406249..406464hypothetical protein; FZC68_104900.0Showinfo_outline
84406620..406799hypothetical protein; FZC68_104950.0Showinfo_outline
85406836..407213PHAGE_Lister_A500_NC_009810: gp50; FZC68_10500; phage(gi157325009)2.72e-22Showinfo_outline
86407250..407660PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10505; phage(gi9630241)6.26e-68Showinfo_outline
87407642..407827PHAGE_Lister_LP_101_NC_024387: hypothetical protein; FZC68_10510; phage(gi658607859)2.89e-10Showinfo_outline
88407824..408357PHAGE_Bacill_vB_BsuM_Goe3_NC_048652: hypothetical protein; FZC68_10515; phage(gi100204)6.74e-49Showinfo_outline
89408354..408659hypothetical protein; FZC68_105200.0Showinfo_outline
90408659..408955hypothetical protein; FZC68_105250.0Showinfo_outline
91408958..409347PHAGE_Bacill_Bobb_NC_024792: hypothetical protein; FZC68_10530; phage(gi682124138)5.62e-78Showinfo_outline
92409408..410190hypothetical protein; FZC68_105350.0Showinfo_outline
93410529..411182PHAGE_Bacill_SIOphi_NC_042133: hypothetical protein; FZC68_10540; phage(gi100065)1.03e-32Showinfo_outline
94411345..412058PHAGE_Lister_LP_124_NC_047745: prohead protease; FZC68_10545; phage(gi100150)1.34e-47Showinfo_outline
95412069..412461PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10550; phage(gi9630249)4.72e-44Showinfo_outline
96412454..412996PHAGE_Bacill_vB_BanS_Tsamsa_NC_023007: hypothetical protein; FZC68_10555; phage(gi564292623)1.31e-36Showinfo_outline
97413128..413439PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10560; phage(gi9630251)4.55e-06Showinfo_outline
98413468..414394PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10565; phage(gi9630252)1.32e-110Showinfo_outline
99414446..415417PHAGE_Bacill_SPbeta_NC_001884: ATP/GTP binding protein; FZC68_10570; phage(gi9630253)0.0Showinfo_outline
100415463..415855PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10575; phage(gi9630254)3.75e-58Showinfo_outline
101415945..417468PHAGE_Bacill_SPbeta_NC_001884: putative replicative DNA helicase; FZC68_10580; phage(gi9630255)0.0Showinfo_outline
102417483..418610PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10585; phage(gi9630256)0.0Showinfo_outline
103418611..420335PHAGE_Bacill_SPbeta_NC_001884: putative ss-DNA-specific endonuclease; FZC68_10590; phage(gi9630257)0.0Showinfo_outline
104420346..424260PHAGE_Bacill_SPbeta_NC_001884: putative DNA polymerase; FZC68_10595; phage(gi9630258)0.0Showinfo_outline
105424260..424940PHAGE_Bacill_vB_BboS_125_NC_048735: tail assembly protein; FZC68_10600; phage(gi100053)5.81e-18Showinfo_outline
106425273..425779PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10605; phage(gi9630264)7.29e-54Showinfo_outline
107425776..426297PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10610; phage(gi9630265)1.36e-76Showinfo_outline
108426391..427137PHAGE_Burkho_Bcep781_NC_004333: gp10; FZC68_10615; phage(gi23752321)1.79e-89Showinfo_outline
109427145..427156attR0.0Showinfo_outline
110427226..427957PHAGE_Synech_S_CAM7_NC_031927: hypothetical protein; FZC68_10620; phage(gi100064)2.09e-86Showinfo_outline
111427995..428204hypothetical protein; FZC68_106250.0Showinfo_outline
112428201..428572PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10630; phage(gi9630269)4.92e-15Showinfo_outline
113428587..428904IDEAL domain-containing protein; FZC68_106350.0Showinfo_outline
114429363..429590PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10640; phage(gi9630272)1.82e-11Showinfo_outline
115429608..429790PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10645; phage(gi9630274)1.68e-21Showinfo_outline
116430137..430415hypothetical protein; FZC68_106500.0Showinfo_outline
117430408..430704hypothetical protein; FZC68_106550.0Showinfo_outline
118430851..431216hypothetical protein; FZC68_106600.0Showinfo_outline
119431218..431230attR0.0Showinfo_outline
120431249..431539hypothetical protein; FZC68_106650.0Showinfo_outline
121431583..431945hypothetical protein; FZC68_106700.0Showinfo_outline
122431967..432158PHAGE_Bacill_BSP38_NC_048726: hypothetical protein; FZC68_10675; phage(gi100130)1.54e-16Showinfo_outline
123432170..432547PHAGE_Bacill_PBS1_NC_043027: hypothetical protein; FZC68_10680; phage(gi100021)4.64e-29Showinfo_outline
124432548..432772PHAGE_Bacill_PM1_NC_020883: hypothetical protein; FZC68_10685; phage(gi472438288)2.07e-12Showinfo_outline
125433133..433399PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10690; phage(gi9630280)1.72e-30Showinfo_outline
126433439..433798PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10695; phage(gi9630284)1.87e-14Showinfo_outline
127433798..434184PHAGE_Bacill_SIOphi_NC_042133: hypothetical protein; FZC68_10700; phage(gi100180)1.04e-45Showinfo_outline
128434162..436264PHAGE_Bacill_Grass_NC_022771: ribonucleotide-diphosphate reductase subunit alpha; FZC68_10705; phage(gi568191694)0.0Showinfo_outline
129436538..437432PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZC68_10710; phage(gi9630287)4.12e-180Showinfo_outline
Bacillus pumilus strain CH144a_4T scaffold3
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 437432 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download