Submission Results

Sequence Name: Not Available

GenBank Accession Number: VTER01000007.1

GenInfo (GI) Number: 0000000000

Download Results: VTER01000007.1.PHASTER.zip

gi|00000000|ref|VTER01000007.1| Bacillus infantis strain CH446_14T scaffold7.1, whole genome 525053, gc%: 45.48%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
143.6Kbintact10043159626-203300 info_outlinePHAGE_Bacill_Pookie_NC_027394(7)37.94%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|VTER01000007.1| Bacillus infantis strain CH446_14T scaffold7.1, whole genome 525053, gc%: 45.48%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 47 CDS

#CDS PositionBLAST HitE-ValueSequence
1159626..159637attL0.0Showinfo_outline
2160700..161608PHAGE_Thermu_P7426_NC_009804: phage XerD-like integrase; FZD51_14815; phage(gi157265417)6.82e-15Showinfo_outline
3complement(162252..162500)PHAGE_Bacter_Lily_NC_028841: Xre-like protein; FZD51_14820; phage(gi971748289)8.29e-13Showinfo_outline
4162687..163031hypothetical protein; FZD51_148250.0Showinfo_outline
5163122..163367hypothetical protein; FZD51_148300.0Showinfo_outline
6163444..163737hypothetical protein; FZD51_148350.0Showinfo_outline
7163764..164903PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZD51_14840; phage(gi9630206)6.85e-22Showinfo_outline
8166232..166777hypothetical protein; FZD51_148450.0Showinfo_outline
9167000..167011attL0.0Showinfo_outline
10167071..169692PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FZD51_14850; phage(gi9630188)0.0Showinfo_outline
11170082..170717PHAGE_Staphy_Twort_NC_007021: ORF052; FZD51_14855; phage(gi66391306)6.88e-06Showinfo_outline
12170795..171034hypothetical protein; FZD51_148600.0Showinfo_outline
13complement(171044..171448)hypothetical protein; FZD51_148650.0Showinfo_outline
14171563..172183PHAGE_Lactob_Bacchae_NC_047924: hypothetical protein; FZD51_14870; phage(gi100166)2.45e-09Showinfo_outline
15172604..172804hypothetical protein; FZD51_148750.0Showinfo_outline
16172863..173126hypothetical protein; FZD51_148800.0Showinfo_outline
17173101..173523PHAGE_Clostr_phiCP34O_NC_019508: hypothetical protein; FZD51_14885; phage(gi422935425)6.43e-19Showinfo_outline
18173696..174301PHAGE_Salmon_Fels_2_NC_010463: DNA-invertase; FZD51_14890; phage(gi169936026)6.09e-23Showinfo_outline
19174356..174562hypothetical protein; FZD51_148950.0Showinfo_outline
20174580..176106PHAGE_Bacill_Pavlov_NC_028782: terminase large subunit; FZD51_14900; phage(gi971743002)0.0Showinfo_outline
21176108..176323hypothetical protein; FZD51_149050.0Showinfo_outline
22176327..178033PHAGE_Bacill_Pavlov_NC_028782: head-to-tail joining protein; FZD51_14910; phage(gi971743004)3.30e-70Showinfo_outline
23178126..178920PHAGE_Bacill_Pavlov_NC_028782: hypothetical protein; FZD51_14915; phage(gi971743005)2.66e-07Showinfo_outline
24178948..179778PHAGE_Thermu_OH2_NC_021784: Gp7; FZD51_14920; phage(gi526118330)3.16e-106Showinfo_outline
25179997..180377hypothetical protein; FZD51_149250.0Showinfo_outline
26180377..182197PHAGE_Bacill_Pavlov_NC_028782: hypothetical protein; FZD51_14930; phage(gi971743015)0.0Showinfo_outline
27182208..184712PHAGE_Bacill_Pavlov_NC_028782: tail fiber; FZD51_14935; phage(gi971743016)2.42e-07Showinfo_outline
28complement(184767..184985)PHAGE_Faecal_FP_Taranis_NC_047914: hypothetical protein; FZD51_14940; phage(gi100084)5.09e-10Showinfo_outline
29185098..186087PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: tail fiber protein; FZD51_14945; phage(gi100052)5.95e-20Showinfo_outline
30186141..187106PHAGE_Bacill_Pavlov_NC_028782: hypothetical protein; FZD51_14950; phage(gi971743018)6.24e-26Showinfo_outline
31187208..187912PHAGE_Strept_phiCAM_NC_041856: tail fiber protein; FZD51_14955; phage(gi100052)7.05e-15Showinfo_outline
32187925..191896PHAGE_Bacill_Pavlov_NC_028782: hypothetical protein; FZD51_14960; phage(gi971743020)1.07e-05Showinfo_outline
33191910..192230hypothetical protein; FZD51_149650.0Showinfo_outline
34192275..192655PHAGE_Staphy_SAP_2_NC_009875: holin; FZD51_14970; phage(gi157738598)3.02e-34Showinfo_outline
35192652..193350PHAGE_Bacill_SP_15_NC_031245: portal protein; FZD51_14975; phage(gi100069)1.47e-39Showinfo_outline
36complement(193381..193743)hypothetical protein; FZD51_149800.0Showinfo_outline
37complement(193836..194042)PHAGE_Bacill_BM5_NC_029069: hypothetical protein; FZD51_14985; phage(gi985757802)7.31e-12Showinfo_outline
38194298..194492hypothetical protein; FZD51_149900.0Showinfo_outline
39194471..194803hypothetical protein; FZD51_149950.0Showinfo_outline
40194803..195990PHAGE_Geobac_GBSV1_NC_008376: DNA segregation protein; FZD51_15000; phage(gi115334652)1.41e-144Showinfo_outline
41196003..196713PHAGE_Bacill_phiCM3_NC_023599: hypothetical protein; FZD51_15005; phage(gi589892735)3.03e-26Showinfo_outline
42196978..197181hypothetical protein; FZD51_150100.0Showinfo_outline
43197590..197787hypothetical protein; FZD51_150150.0Showinfo_outline
44complement(197833..198102)hypothetical protein; FZD51_150200.0Showinfo_outline
45198307..200070PHAGE_Bacill_SPbeta_NC_001884: ABC transporter; FZD51_15025; phage(gi9630145)7.20e-21Showinfo_outline
46203164..203175attR0.0Showinfo_outline
47203300..203311attR0.0Showinfo_outline
Bacillus infantis strain CH446_14T scaffold7
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 525053 bps
Phages: 1
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Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download