Submission Results

Sequence Name: Not Available

GenBank Accession Number: VTUJ01000003.1

GenInfo (GI) Number: 0000000000

Download Results: VTUJ01000003.1.PHASTER.zip

gi|00000000|ref|VTUJ01000003.1| Klebsiella grimontii strain K1 NODE_4_length_367145_cov_32.2489, 367145, gc%: 55.61%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 0 regions are intact, 0 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
139.9Kbquestionable9042104072-144049 info_outlinePHAGE_Salmon_SEN34_NC_028699(8)53.54%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|VTUJ01000003.1| Klebsiella grimontii strain K1 NODE_4_length_367145_cov_32.2489, 367145, gc%: 55.61%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 44 CDS

#CDS PositionBLAST HitE-ValueSequence
1104072..104083attL0.0Showinfo_outline
2complement(117295..118911)PHAGE_Burkho_Bcep1_NC_005263: gp18; F0332_04575; phage(gi38638625)4.88e-15Showinfo_outline
3complement(118924..119745)hypothetical protein; F0332_045800.0Showinfo_outline
4complement(119742..121163)DUF1073 domain-containing protein; F0332_045850.0Showinfo_outline
5complement(121175..122506)PHAGE_Salmon_SSU5_NC_018843: putative terminase large subunit; F0332_04590; phage(gi410491412)3.47e-18Showinfo_outline
6complement(122510..123250)PHAGE_Escher_PA28_NC_041935: hypothetical protein; F0332_04595; phage(gi100067)2.73e-32Showinfo_outline
7complement(123508..123957)PHAGE_Salmon_SEN34_NC_028699: lysin; F0332_04600; phage(gi966201479)1.09e-75Showinfo_outline
8complement(123941..124285)PHAGE_Salmon_Fels_1_NC_010391: bacteriophage lysis protein; holin; F0332_04605; phage(gi169257181)7.92e-42Showinfo_outline
9complement(124809..125618)PHAGE_Salmon_SEN34_NC_028699: putative antitermination protein; F0332_04610; phage(gi966201477)2.41e-75Showinfo_outline
10complement(125615..125755)PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; F0332_04615; phage(gi966201476)6.25e-06Showinfo_outline
11complement(125752..125976)PHAGE_Salmon_ST160_NC_014900: NinY; F0332_04620; phage(gi318065939)7.25e-31Showinfo_outline
12complement(125973..126611)PHAGE_Salmon_SEN34_NC_028699: protein NinG; F0332_04625; phage(gi966201475)3.76e-41Showinfo_outline
13complement(126604..126774)PHAGE_Escher_HK639_NC_016158: NinE; F0332_04630; phage(gi356870663)9.12e-19Showinfo_outline
14complement(126780..127376)PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; F0332_04635; phage(gi966201473)1.16e-61Showinfo_outline
15complement(127680..128276)PHAGE_Salmon_118970_sal4_NC_030919: hypothetical protein; F0332_04640; phage(gi100006)1.35e-15Showinfo_outline
16complement(128273..128545)PHAGE_Entero_mEp213_NC_019720: hypothetical protein; F0332_04645; phage(gi428782622)1.40e-52Showinfo_outline
17complement(128548..128937)hypothetical protein; F0332_046500.0Showinfo_outline
18complement(128930..129193)PHAGE_Salmon_SPN1S_NC_016761: hypothetical protein; F0332_04655; phage(gi374531241)3.04e-41Showinfo_outline
19complement(129715..130008)PHAGE_Entero_933W_NC_000924: Ren protein; F0332_04660; phage(gi9632496)2.89e-39Showinfo_outline
20complement(130005..130853)PHAGE_Entero_mEpX1_NC_019709: putative replication protein DnaC; F0332_04665; phage(gi428781919)2.81e-118Showinfo_outline
21complement(130850..131746)PHAGE_Entero_mEpX1_NC_019709: DNA replication protein O; F0332_04670; phage(gi428781918)2.48e-88Showinfo_outline
22complement(131743..132540)PHAGE_Salmon_64795_sal3_NC_031918: membrane-associated initiation of head vertex; F0332_04675; phage(gi100034)1.39e-65Showinfo_outline
23complement(132585..133130)PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_030909: hypothetical protein; F0332_04680; phage(gi100028)3.09e-35Showinfo_outline
24complement(133127..133348)PHAGE_Entero_mEp213_NC_019720: CII protein; F0332_04685; phage(gi428782643)9.28e-10Showinfo_outline
25complement(133389..133622)PHAGE_Escher_HK639_NC_016158: cro; F0332_04690; phage(gi356870651)1.85e-19Showinfo_outline
26133750..134439PHAGE_Escher_HK639_NC_016158: cI; F0332_04695; phage(gi356870650)7.36e-82Showinfo_outline
27135040..135315PHAGE_Entero_mEp235_NC_019708: hypothetical protein; F0332_04700; phage(gi428781847)4.55e-37Showinfo_outline
28135553..135777PHAGE_Salmon_SEN34_NC_028699: membrane carboxypeptidase; F0332_04705; phage(gi966201457)3.73e-39Showinfo_outline
29135755..136201PHAGE_Erwini_vB_EamP_S6_NC_019514: gp055; F0332_04710; phage(gi422935894)2.96e-50Showinfo_outline
30136271..137272PHAGE_Edward_GF_2_NC_026611: hypothetical protein; F0332_04715; phage(gi764162300)2.37e-82Showinfo_outline
31137280..137564PHAGE_Escher_HK639_NC_016158: hypothetical protein; F0332_04720; phage(gi356870640)1.26e-51Showinfo_outline
32137580..138425PHAGE_Salmon_SEN34_NC_028699: recombinational DNA repair protein RecT (prophage associated); F0332_04725; phage(gi966201455)6.81e-17Showinfo_outline
33138422..139042PHAGE_Pseudo_PMG1_NC_016765: hypothetical protein; F0332_04730; phage(gi374531724)2.79e-31Showinfo_outline
34139035..139721PHAGE_Salmon_SEN34_NC_028699: exonuclease; F0332_04735; phage(gi966201454)1.16e-145Showinfo_outline
35139718..139876PHAGE_Salmon_SPN1S_NC_016761: hypothetical protein; F0332_04740; phage(gi374531225)7.45e-20Showinfo_outline
36139873..140100hypothetical protein; F0332_047450.0Showinfo_outline
37140097..140756PHAGE_Escher_HK639_NC_016158: adenine specific methyltransferase; F0332_04750; phage(gi356870635)2.50e-149Showinfo_outline
38140753..141523PHAGE_Escher_vB_EcoM_ECO1230_10_NC_027995: conserved phage protein; F0332_04755; phage(gi937533322)4.82e-78Showinfo_outline
39141520..141741PHAGE_Escher_PA28_NC_041935: hypothetical protein; F0332_04760; phage(gi100017)6.62e-09Showinfo_outline
40141738..142457PHAGE_Escher_RCS47_NC_042128: baseplate subunit; F0332_04765; phage(gi100105)7.43e-40Showinfo_outline
41142454..142672PHAGE_Escher_PA28_NC_041935: hypothetical protein; F0332_04770; phage(gi100016)4.11e-17Showinfo_outline
42142674..143009PHAGE_Cronob_ENT47670_NC_019927: excisionase; F0332_04775; phage(gi431810536)1.92e-09Showinfo_outline
43142815..142826attR0.0Showinfo_outline
44142886..144049PHAGE_Escher_HK639_NC_016158: integrase; F0332_04780; phage(gi356870629)0.0Showinfo_outline
Klebsiella grimontii strain K1 NODE_4_length_367145_cov_32.2489
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 367145 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download