Submission Results

Sequence Name: Not Available

GenBank Accession Number: VTZI01000001.1

GenInfo (GI) Number: 0000000000

Download Results: VTZI01000001.1.PHASTER.zip

gi|00000000|ref|VTZI01000001.1| Bacillus anthracis strain ATCC 6603 1163259, gc%: 36.11%

Download summary as .txt file: summary.txt file_download

Total: 2 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
151.9Kbincomplete5066857484-909385 info_outlinePHAGE_Bacill_vB_BceS_MY192_NC_048633(30)35.14%Show info_outline
233.3Kbquestionable70311124448-1157818 info_outlinePHAGE_Bacill_phi4B1_NC_028886(7)35.95%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|VTZI01000001.1| Bacillus anthracis strain ATCC 6603 1163259, gc%: 36.11%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 72 CDS

#CDS PositionBLAST HitE-ValueSequence
1857484..857495attL0.0Showinfo_outline
2complement(863316..864446)PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; F0721_04905; phage(gi100035)4.92e-72Showinfo_outline
3864779..864967hypothetical protein; F0721_049100.0Showinfo_outline
4865124..865135attL0.0Showinfo_outline
5complement(865194..865538)PHAGE_Bacill_phBC6A51_NC_004820: Transcriptional regulator, MerR family; F0721_04915; phage(gi31415741)7.54e-62Showinfo_outline
6865974..867071PHAGE_Bacill_phBC6A51_NC_004820: Prophage helix-turn-helix protein; F0721_04920; phage(gi31415742)1.12e-149Showinfo_outline
7complement(867495..867863)PHAGE_Bacill_250_NC_029024: helix-turn-helix domain protein; F0721_04925; phage(gi971766654)6.35e-17Showinfo_outline
8868083..868310PHAGE_Staphy_53_NC_007049: ORF020; F0721_04930; phage(gi66395390)4.67e-10Showinfo_outline
9868362..868562PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; F0721_04935; phage(gi100039)6.31e-12Showinfo_outline
10868994..869710PHAGE_Bacill_PfEFR_4_NC_048641: putative phosphoesterase; F0721_04940; phage(gi100037)2.34e-164Showinfo_outline
11869679..870482PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F0721_04945; phage(gi100038)0.0Showinfo_outline
12870498..870692PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F0721_04950; phage(gi100039)2.30e-40Showinfo_outline
13870718..870891PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F0721_04955; phage(gi100040)5.54e-33Showinfo_outline
14870906..871160PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; F0721_04960; phage(gi100014)2.74e-56Showinfo_outline
15871173..871460PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F0721_04965; phage(gi100042)4.31e-64Showinfo_outline
16871499..872443PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; F0721_04970; phage(gi100016)0.0Showinfo_outline
17872452..872595PHAGE_Bacill_PfEFR_4_NC_048641: DNA helicase; F0721_04975; phage(gi100044)3.08e-25Showinfo_outline
18872579..872773PHAGE_Bacill_PfEFR_4_NC_048641: putative transcriptional regulator; F0721_04980; phage(gi100045)3.59e-39Showinfo_outline
19872840..873286PHAGE_Bacill_PfEFR_4_NC_048641: HNH endonuclease; F0721_04985; phage(gi100046)2.67e-92Showinfo_outline
20873312..873542PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: putative phosphoesterase; F0721_04990; phage(gi100037)9.20e-15Showinfo_outline
21873709..874119PHAGE_Bacill_Gamma_NC_007458: conserved phage protein; F0721_04995; phage(gi77020171)3.82e-96Showinfo_outline
22complement(874166..874585)PHAGE_Bacill_Gamma_NC_007458: fosfomycin resistance protein; F0721_05000; phage(gi77020174)2.60e-82Showinfo_outline
23complement(874669..874860)PHAGE_Bacill_Gamma_NC_007458: hypothetical protein; F0721_05005; phage(gi77020181)3.38e-28Showinfo_outline
24874922..875428PHAGE_Bacill_phi4B1_NC_028886: hypothetical protein; F0721_05010; phage(gi971821266)2.86e-104Showinfo_outline
25876173..876379PHAGE_Lister_LP_HM00113468_NC_049900: hypothetical protein; F0721_05015; phage(gi100027)1.36e-07Showinfo_outline
26876416..876694hypothetical protein; F0721_050200.0Showinfo_outline
27876639..876821hypothetical protein; F0721_050250.0Showinfo_outline
28876814..877062PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; F0721_05030; phage(gi100029)2.00e-47Showinfo_outline
29877080..877436hypothetical protein; F0721_050350.0Showinfo_outline
30877470..877799permease; F0721_050400.0Showinfo_outline
31877817..877939PHAGE_Bacill_Gamma_NC_007458: conserved phage protein; F0721_05045; phage(gi77020188)1.83e-05Showinfo_outline
32878245..878715PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F0721_05050; phage(gi100060)1.70e-51Showinfo_outline
33878712..879254PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F0721_05055; phage(gi100061)1.32e-109Showinfo_outline
34879456..879468attL0.0Showinfo_outline
35879528..880349hypothetical protein; F0721_050600.0Showinfo_outline
36880737..880952PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F0721_05065; phage(gi100064)8.31e-13Showinfo_outline
37880945..881307PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F0721_05070; phage(gi100004)7.07e-72Showinfo_outline
38881469..881849PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F0721_05075; phage(gi100005)9.57e-90Showinfo_outline
39881830..883602PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F0721_05080; phage(gi100006)0.0Showinfo_outline
40883618..884832PHAGE_Bacill_vB_BceS_MY192_NC_048633: DNA adenine methyltransferase; F0721_05085; phage(gi100041)0.0Showinfo_outline
41884810..885565PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; F0721_05090; phage(gi100042)4.60e-178Showinfo_outline
42885562..886749PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F0721_05095; phage(gi100009)0.0Showinfo_outline
43886727..887026fibronectin type III domain-containing protein; F0721_051000.0Showinfo_outline
44887035..887310PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F0721_05105; phage(gi100010)4.62e-57Showinfo_outline
45887297..887644PHAGE_Bacill_vB_BceS_MY192_NC_048633: putative transcriptional regulator; F0721_05110; phage(gi100045)6.08e-81Showinfo_outline
46887632..888069PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F0721_05115; phage(gi100012)8.07e-102Showinfo_outline
47888066..888425PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F0721_05120; phage(gi100013)1.39e-83Showinfo_outline
48888439..889023PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F0721_05125; phage(gi100014)6.71e-141Showinfo_outline
49889083..889493PHAGE_Bacill_vB_BceS_MY192_NC_048633: recombination protein; F0721_05130; phage(gi100049)5.20e-65Showinfo_outline
50889495..889635PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F0721_05135; phage(gi100016)9.73e-25Showinfo_outline
51889651..894665PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F0721_05140; phage(gi100017)0.0Showinfo_outline
52894702..896183PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F0721_05145; phage(gi100018)0.0Showinfo_outline
53896180..898162PHAGE_Bacill_vB_BceS_MY192_NC_048633: tail assembly protein; F0721_05150; phage(gi100053)0.0Showinfo_outline
54898159..900264PHAGE_Bacill_phi4J1_NC_029008: tail fiber; F0721_05155; phage(gi971821625)1.01e-49Showinfo_outline
55900289..900564PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; F0721_05160; phage(gi100072)8.53e-43Showinfo_outline
56900720..901688PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; F0721_05165; phage(gi100020)0.0Showinfo_outline
57901693..902118PHAGE_Bacill_WBeta_NC_007734: phage holin; F0721_05170; phage(gi85701395)2.05e-94Showinfo_outline
58902118..902822PHAGE_Paenib_Kawika_NC_048715: hypothetical protein; F0721_05175; phage(gi100022)2.77e-82Showinfo_outline
59complement(902886..903467)PHAGE_Bacill_phIS3501_NC_019502: phage protein; F0721_05180; phage(gi422934344)4.71e-132Showinfo_outline
60complement(903473..903655)PHAGE_Bacill_Gamma_NC_007458: hypothetical protein; F0721_05185; phage(gi77020185)3.32e-06Showinfo_outline
61complement(903659..903865)PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; F0721_05190; phage(gi85701398)2.52e-24Showinfo_outline
62903877..903889attR0.0Showinfo_outline
63904049..904351PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; F0721_05195; phage(gi85701399)1.16e-65Showinfo_outline
64904354..904536PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F0721_05200; phage(gi31415810)5.53e-29Showinfo_outline
65904652..905833PHAGE_Bacill_phIS3501_NC_019502: FtsK/SpoIIIE family phage protein; F0721_05205; phage(gi422934346)0.0Showinfo_outline
66905775..906398PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F0721_05210; phage(gi31415811)3.34e-131Showinfo_outline
67906420..906431attR0.0Showinfo_outline
68complement(906431..907027)PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; F0721_05215; phage(gi100065)2.92e-109Showinfo_outline
69907435..907935DUF177 domain-containing protein; F0721_052200.0Showinfo_outline
70907997..90817050S ribosomal protein L32; F0721_052250.0Showinfo_outline
71908300..908806PHAGE_Bacill_Stills_NC_028777: hypothetical protein; F0721_05230; phage(gi100026)3.19e-05Showinfo_outline
72909385..909396attR0.0Showinfo_outline

Region 2, total 35 CDS

#CDS PositionBLAST HitE-ValueSequence
11124448..1124460attL0.0Showinfo_outline
2complement(1138203..1139168)PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; F0721_06315; phage(gi100010)1.89e-49Showinfo_outline
31139282..1140238PHAGE_Acidia_virus_NC_029316: AAA+ ATPase; F0721_06320; phage(gi1002166819)6.54e-05Showinfo_outline
4complement(1140141..1140407)hypothetical protein; F0721_063250.0Showinfo_outline
5complement(1140507..1141130)trimeric intracellular cation channel family protein; F0721_063300.0Showinfo_outline
61141223..1142493GTPase HflX; F0721_063350.0Showinfo_outline
71142486..1143757methionine gamma-lyase family protein; F0721_063400.0Showinfo_outline
81143927..1143938attL0.0Showinfo_outline
91143933..1144322transcriptional repressor GlnR; F0721_063450.0Showinfo_outline
101144371..1145705type I glutamate--ammonia ligase; F0721_063500.0Showinfo_outline
11complement(1145820..1146449)PHAGE_Bacill_phi4B1_NC_028886: site-specific recombinase; F0721_06355; phage(gi971821285)7.56e-34Showinfo_outline
12complement(1146494..1146964)PHAGE_Bacill_phi4B1_NC_028886: site-specific recombinase; F0721_06360; phage(gi971821285)4.17e-37Showinfo_outline
13complement(1147189..1147617)PHAGE_Anoxyb_A403_NC_048701: tail fiber protein; F0721_06365; phage(gi100052)7.15e-27Showinfo_outline
14complement(1147640..1148053)PHAGE_Bacill_phi4B1_NC_028886: DNA-binding helix-turn-helix protein; F0721_06370; phage(gi971821252)4.43e-34Showinfo_outline
151148329..1148529PHAGE_Bacter_Rani_NC_029084: DNA-binding protein; F0721_06375; phage(gi985759363)2.53e-15Showinfo_outline
161148526..1149254PHAGE_Bacill_BMBtpLA_NC_028748: hypothetical protein; F0721_06380; phage(gi971482519)2.48e-64Showinfo_outline
171149363..1149629PHAGE_Bacill_PfEFR_4_NC_048641: holin; F0721_06385; phage(gi100034)2.28e-33Showinfo_outline
181149605..1149790hypothetical protein; F0721_063900.0Showinfo_outline
191149780..1150097PHAGE_Bacill_phi4J1_NC_029008: hypothetical protein; F0721_06395; phage(gi971821611)9.72e-05Showinfo_outline
201150069..1150332PHAGE_Bacill_phi4B1_NC_028886: hypothetical protein; F0721_06400; phage(gi971821255)4.06e-16Showinfo_outline
211150347..1150829PHAGE_Deep_s_D6E_NC_019544: gp157-like protein; F0721_06405; phage(gi423262358)3.21e-45Showinfo_outline
221150826..1151497PHAGE_Bacill_phi4B1_NC_028886: Erf family protein; F0721_06410; phage(gi971821254)9.59e-31Showinfo_outline
231151511..1151783PHAGE_Bacill_phi4B1_NC_028886: hypothetical protein; F0721_06415; phage(gi971821281)1.82e-48Showinfo_outline
241151780..1152538PHAGE_Staphy_96_NC_007057: ORF015; F0721_06420; phage(gi66395900)9.51e-43Showinfo_outline
251152474..1153304PHAGE_Bacill_Pony_NC_022770: replication initiator protein; F0721_06425; phage(gi568191570)6.10e-46Showinfo_outline
261153483..1153494attR0.0Showinfo_outline
271153489..1154118PHAGE_Bacill_phi4B1_NC_028886: hypothetical protein; F0721_06430; phage(gi971821278)2.17e-32Showinfo_outline
281154121..1154243Fur-regulated basic protein FbpA; F0721_064350.0Showinfo_outline
291154338..1154910PHAGE_Bacill_BMBtpLA_NC_028748: hypothetical protein; F0721_06440; phage(gi971482529)4.99e-104Showinfo_outline
301154925..1155704PHAGE_Paenib_Tadhana_NC_048691: tail tip protein; F0721_06445; phage(gi100054)9.42e-60Showinfo_outline
311155794..1155973hypothetical protein; F0721_064500.0Showinfo_outline
321155936..1156694PHAGE_Bacill_Mgbh1_NC_041879: terminase large subunit; F0721_06455; phage(gi100070)3.16e-106Showinfo_outline
331157089..1157373PHAGE_Geobac_E2_NC_009552: hypothetical protein; F0721_06460; phage(gi148747780)5.83e-45Showinfo_outline
341157405..1157731PHAGE_Bacill_phi4B1_NC_028886: ArpU family transcriptional regulator; F0721_06465; phage(gi971821295)5.29e-13Showinfo_outline
351157818..1157830attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 1163259 bps
Phages: 2
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Click on a sequence to see details.
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download