Submission Results

Sequence Name: Not Available

GenBank Accession Number: VVIS01000002.1

GenInfo (GI) Number: 0000000000

Download Results: VVIS01000002.1.PHASTER.zip

gi|00000000|ref|VVIS01000002.1| Bacillus velezensis strain VB7 996972, gc%: 46.07%

Download summary as .txt file: summary.txt file_download

Total: 3 prophage regions have been identified, of which 0 regions are intact, 2 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
115.8Kbincomplete2023208255-224150 info_outlinePHAGE_Bacill_SPbeta_NC_001884(10)37.47%Show info_outline
242.1Kbquestionable8255326517-368693 info_outlinePHAGE_Bacill_phi105_NC_004167(28)41.91%Show info_outline
330Kbincomplete4015534301-564354 info_outlinePHAGE_Bacill_SIOphi_NC_042133(2)42.77%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|VVIS01000002.1| Bacillus velezensis strain VB7 996972, gc%: 46.07%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 25 CDS

#CDS PositionBLAST HitE-ValueSequence
1208255..208788PHAGE_Temper_phiNIH1.1_NC_003157: putative methionine sulfoxide reductase; F1650_06560; phage(gi16271776)9.85e-19Showinfo_outline
2208790..209224PHAGE_Temper_phiNIH1.1_NC_003157: putative methionine sulfoxide reductase; F1650_06565; phage(gi16271776)5.40e-43Showinfo_outline
3complement(209265..209855)polysaccharide biosynthesis protein; F1650_065700.0Showinfo_outline
4209702..209713attL0.0Showinfo_outline
5complement(209878..211545)PHAGE_Bacill_SPbeta_NC_001884: site-specific recombinase; F1650_06575; phage(gi9630126)0.0Showinfo_outline
6211815..212042hypothetical protein; F1650_065800.0Showinfo_outline
7212066..212386hypothetical protein; F1650_065850.0Showinfo_outline
8complement(212524..213489)PHAGE_Bacill_SPbeta_NC_001884: putative DNase/RNase endonuclease; F1650_06590; phage(gi9630131)1.45e-125Showinfo_outline
9213754..214188PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; F1650_06595; phage(gi9630133)1.82e-05Showinfo_outline
10214225..216023PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; F1650_06600; phage(gi9630134)0.0Showinfo_outline
11216039..216497SMI1/KNR4 family protein; F1650_066050.0Showinfo_outline
12216710..217069PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; F1650_06610; phage(gi9630139)6.60e-44Showinfo_outline
13complement(217128..218147)hypothetical protein; F1650_066150.0Showinfo_outline
14218521..218635PHAGE_Bacill_SPbeta_NC_001884: IMPB/MUCB/SAMB family protein; F1650_06620; phage(gi9630142)4.17e-06Showinfo_outline
15complement(218681..218803)PHAGE_Bacill_phi105_NC_004167: hypothetical protein; F1650_06625; phage(gi22855024)4.70e-05Showinfo_outline
16complement(218800..219915)PHAGE_Bacill_phi105_NC_048631: hypothetical protein; F1650_06630; phage(gi100028)2.19e-114Showinfo_outline
17220270..220722PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; F1650_06635; phage(gi9630229)3.87e-85Showinfo_outline
18complement(220956..221330)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; F1650_06640; phage(gi9630236)4.40e-39Showinfo_outline
19221680..222070hypothetical protein; F1650_066450.0Showinfo_outline
20221807..221818attR0.0Showinfo_outline
21complement(222130..222363)hypothetical protein; F1650_066500.0Showinfo_outline
22222799..223152DUF3221 domain-containing protein; F1650_066550.0Showinfo_outline
23223318..223512PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; F1650_06660; phage(gi9630309)1.93e-16Showinfo_outline
24223515..223691PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; F1650_06665; phage(gi9630310)1.42e-31Showinfo_outline
25complement(223725..224150)PHAGE_Synech_ACG_2014f_NC_047714: hypothetical protein; F1650_06670; phage(gi100219)6.21e-13Showinfo_outline

Region 2, total 60 CDS

#CDS PositionBLAST HitE-ValueSequence
1326517..327062PHAGE_Bacill_BtCS33_NC_018085: integrase; F1650_07230; phage(gi392972759)1.08e-55Showinfo_outline
2327105..327177tRNA0.0Showinfo_outline
3327264..327275attL0.0Showinfo_outline
4complement(327336..328442)PHAGE_Bacill_BCJA1c_NC_006557: integrase; F1650_07240; phage(gi56694872)1.55e-138Showinfo_outline
5328685..329785PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; F1650_07245; phage(gi85701407)6.23e-10Showinfo_outline
6complement(329902..330129)hypothetical protein; F1650_072500.0Showinfo_outline
7complement(330217..330615)PHAGE_Bacill_phi105_NC_004167: immunity repressor; F1650_07255; phage(gi22855027)6.87e-09Showinfo_outline
8330780..330986PHAGE_Anoxyb_A403_NC_048701: putative single-stranded DNA binding protein; F1650_07260; phage(gi100050)1.01e-06Showinfo_outline
9331050..331373PHAGE_Lactoc_lato_NC_004746: hypothetical protein; F1650_07265; phage(gi30089865)8.38e-19Showinfo_outline
10331391..331615hypothetical protein; F1650_072700.0Showinfo_outline
11331602..332474PHAGE_Strept_SM1_NC_004996: gp19; F1650_07275; phage(gi32469450)5.56e-57Showinfo_outline
12332458..333291PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; F1650_07280; phage(gi100011)3.71e-44Showinfo_outline
13333607..334155PHAGE_Brevib_Abouo_NC_029029: hypothetical protein; F1650_07285; phage(gi971767241)2.18e-12Showinfo_outline
14334264..334404BH0509 family protein; F1650_072900.0Showinfo_outline
15334652..334855hypothetical protein; F1650_072950.0Showinfo_outline
16334996..335376hypothetical protein; F1650_073000.0Showinfo_outline
17335373..335774PHAGE_Bacill_JBP901_NC_027352: hypothetical protein; F1650_07305; phage(gi849251706)1.07e-36Showinfo_outline
18335789..336052PHAGE_Bacill_SP_10_NC_019487: hypothetical protein; F1650_07310; phage(gi418489652)2.34e-10Showinfo_outline
19336049..336801PHAGE_Paenib_Jacopo_NC_048718: tail length tape-measure protein; F1650_07315; phage(gi100057)8.19e-68Showinfo_outline
20336820..337545HNH endonuclease; F1650_073200.0Showinfo_outline
21337569..338786hypothetical protein; F1650_073250.0Showinfo_outline
22338857..338868attL0.0Showinfo_outline
23339074..339526PHAGE_Thermu_OH2_NC_021784: phage transcriptional regulator, ArpU; F1650_07330; phage(gi526118340)3.82e-50Showinfo_outline
24339523..340065PHAGE_Bacill_phIS3501_NC_019502: site-specific phage integrase; F1650_07335; phage(gi422934319)6.49e-81Showinfo_outline
25340222..340881PHAGE_Lactob_KC5a_NC_007924: hypothetical protein; F1650_07340; phage(gi90592606)1.46e-37Showinfo_outline
26341009..341191hypothetical protein; F1650_073450.0Showinfo_outline
27341271..341669hypothetical protein; F1650_073500.0Showinfo_outline
28341711..342235hypothetical protein; F1650_073550.0Showinfo_outline
29342374..342748PHAGE_Bacill_phi105_NC_004167: hypothetical protein; F1650_07360; phage(gi22855043)2.01e-87Showinfo_outline
30342717..343043PHAGE_Bacill_phi105_NC_004167: hypothetical protein; F1650_07365; phage(gi22855044)1.46e-72Showinfo_outline
31343130..343663PHAGE_Bacill_phi105_NC_004167: hypothetical protein; F1650_07370; phage(gi22854994)9.87e-94Showinfo_outline
32343663..345372PHAGE_Bacill_phi105_NC_004167: hypothetical protein; F1650_07375; phage(gi22854995)0.0Showinfo_outline
33345385..345603PHAGE_Bacill_phi105_NC_004167: hypothetical protein; F1650_07380; phage(gi22854997)2.71e-43Showinfo_outline
34345609..346859PHAGE_Bacill_phi105_NC_004167: hypothetical protein; F1650_07385; phage(gi22854998)0.0Showinfo_outline
35346849..347475PHAGE_Bacill_phi105_NC_004167: hypothetical protein; F1650_07390; phage(gi22854999)2.24e-150Showinfo_outline
36347515..348708PHAGE_Bacill_phi105_NC_004167: hypothetical protein; F1650_07395; phage(gi22855000)0.0Showinfo_outline
37348721..349032PHAGE_Bacill_phi105_NC_004167: hypothetical protein; F1650_07400; phage(gi22855001)2.55e-64Showinfo_outline
38349060..349605PHAGE_Bacill_phi105_NC_004167: hypothetical protein; F1650_07405; phage(gi22855002)3.72e-115Showinfo_outline
39349620..349967PHAGE_Bacill_phi105_NC_004167: hypothetical protein; F1650_07410; phage(gi22855003)8.67e-79Showinfo_outline
40349900..350259PHAGE_Bacill_phi105_NC_004167: hypothetical protein; F1650_07415; phage(gi22855004)1.00e-79Showinfo_outline
41350252..350635PHAGE_Bacill_phi105_NC_004167: hypothetical protein; F1650_07420; phage(gi22855005)3.78e-88Showinfo_outline
42350524..351012PHAGE_Bacill_phi105_NC_004167: hypothetical protein; F1650_07425; phage(gi22855006)6.43e-110Showinfo_outline
43351013..351621PHAGE_Bacill_phi105_NC_004167: hypothetical protein; F1650_07430; phage(gi22855007)1.09e-119Showinfo_outline
44351673..352011PHAGE_Bacill_phi105_NC_004167: hypothetical protein; F1650_07435; phage(gi22855008)3.34e-69Showinfo_outline
45352008..352199PHAGE_Bacill_phi105_NC_048631: hypothetical protein; F1650_07440; phage(gi100015)2.19e-31Showinfo_outline
46352212..356087PHAGE_Bacill_phi105_NC_004167: hypothetical protein; F1650_07445; phage(gi22855009)0.0Showinfo_outline
47356087..356926PHAGE_Bacill_phi105_NC_004167: hypothetical protein; F1650_07450; phage(gi22855011)3.87e-161Showinfo_outline
48356938..358641PHAGE_Bacill_phi105_NC_004167: hypothetical protein; F1650_07455; phage(gi22855012)0.0Showinfo_outline
49358646..358657attR0.0Showinfo_outline
50358681..361242PHAGE_Bacill_phi105_NC_004167: hypothetical protein; F1650_07460; phage(gi22855014)0.0Showinfo_outline
51361255..362391PHAGE_Bacill_phi105_NC_004167: hypothetical protein; F1650_07465; phage(gi22855015)0.0Showinfo_outline
52362388..362750PHAGE_Bacill_phi105_NC_004167: hypothetical protein; F1650_07470; phage(gi22855016)1.58e-76Showinfo_outline
53362747..362935PHAGE_Bacill_phi105_NC_004167: hypothetical protein; F1650_07475; phage(gi22855017)4.32e-39Showinfo_outline
54362981..363403PHAGE_Bacill_phi105_NC_004167: hypothetical protein; F1650_07480; phage(gi22855018)4.17e-85Showinfo_outline
55363451..364461PHAGE_Bacill_phi105_NC_004167: hypothetical protein; F1650_07485; phage(gi22855019)5.04e-105Showinfo_outline
56complement(364509..365234)hypothetical protein; F1650_074900.0Showinfo_outline
57complement(365427..365867)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; F1650_07495; phage(gi9630136)1.01e-10Showinfo_outline
58complement(365883..367709)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; F1650_07500; phage(gi9630134)1.48e-139Showinfo_outline
59complement(367894..368017)integrase; F1650_075050.0Showinfo_outline
60368693..368704attR0.0Showinfo_outline

Region 3, total 17 CDS

#CDS PositionBLAST HitE-ValueSequence
1534301..534312attL0.0Showinfo_outline
2547150..547281PHAGE_Bacill_phi4B1_NC_028886: site-specific recombinase; F1650_08075; phage(gi971821285)6.55e-06Showinfo_outline
3complement(547585..548135)hypothetical protein; F1650_080800.0Showinfo_outline
4complement(548325..548575)PHAGE_Bacill_phi105_NC_048631: HNH endonuclease; F1650_08085; phage(gi100046)1.30e-44Showinfo_outline
5548644..549055PHAGE_Bacill_BM5_NC_029069: hypothetical protein; F1650_08090; phage(gi985757867)1.12e-12Showinfo_outline
6complement(549204..550538)type I glutamate--ammonia ligase; F1650_080950.0Showinfo_outline
7complement(550596..551000)MerR family transcriptional regulator; F1650_081000.0Showinfo_outline
8complement(551110..552375)aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme; F1650_081050.0Showinfo_outline
9complement(552392..553654)GTPase HflX; F1650_081100.0Showinfo_outline
10complement(553784..554752)PHAGE_Bacill_G_NC_023719: gp596; F1650_08115; phage(gi593778038)5.82e-65Showinfo_outline
11554801..555025hypothetical protein; F1650_081200.0Showinfo_outline
12555059..555817PHAGE_Deep_s_D6E_NC_019544: lysin; F1650_08125; phage(gi423262347)2.96e-70Showinfo_outline
13complement(555866..556486)PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; F1650_08130; phage(gi100093)4.34e-61Showinfo_outline
14complement(556535..557524)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; F1650_08135; phage(gi9630287)0.0Showinfo_outline
15complement(557542..559644)PHAGE_Bacill_Grass_NC_022771: ribonucleotide-diphosphate reductase subunit alpha; F1650_08140; phage(gi568191694)0.0Showinfo_outline
16complement(559604..559996)PHAGE_Bacill_G_NC_023719: gp81; F1650_08145; phage(gi593777549)2.64e-41Showinfo_outline
17564354..564365attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 996972 bps
Phages: 3
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download