Submission Results

Sequence Name: Not Available

GenBank Accession Number: VWVP01000012.1

GenInfo (GI) Number: 0000000000

Download Results: VWVP01000012.1.PHASTER.zip

gi|00000000|ref|VWVP01000012.1| Bacillus sp. SRB1LM NODE_13_length_55054_cov_65.270149, whole 55150, gc%: 36.43%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
153.3Kbintact14070836-54220 info_outlinePHAGE_Bacill_IEBH_NC_011167(22)36.39%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|VWVP01000012.1| Bacillus sp. SRB1LM NODE_13_length_55054_cov_65.270149, whole 55150, gc%: 36.43%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 70 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(836..1252)PHAGE_Thermu_OH2_NC_021784: endodeoxyribonuclease RusA; F3I01_13160; phage(gi526118343)6.86e-58Showinfo_outline
2complement(1628..1906)hypothetical protein; F3I01_131650.0Showinfo_outline
3complement(2286..2579)hypothetical protein; F3I01_131700.0Showinfo_outline
4complement(3661..4152)PHAGE_Bacill_DK3_NC_049969: hypothetical protein; F3I01_13175; phage(gi100005)7.28e-24Showinfo_outline
5complement(4106..4882)PHAGE_Burkho_BcepSaruman_NC_049850: terminase large subunit; F3I01_13180; phage(gi100070)1.41e-06Showinfo_outline
6complement(5125..5376)PHAGE_Bacill_BigBertha_NC_022769: hypothetical protein; F3I01_13185; phage(gi568191265)1.66e-06Showinfo_outline
7complement(5389..5634)PHAGE_Bacill_250_NC_029024: glutaredoxin-like protein NrdH-related protein; F3I01_13190; phage(gi971766672)4.58e-07Showinfo_outline
8complement(5704..5898)PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; F3I01_13195; phage(gi197261528)1.03e-27Showinfo_outline
9complement(5882..6022)PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; F3I01_13200; phage(gi197261527)7.43e-24Showinfo_outline
10complement(6032..6745)PHAGE_Bacill_250_NC_029024: hypothetical protein; F3I01_13205; phage(gi971766653)7.97e-31Showinfo_outline
11complement(6757..7020)PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; F3I01_13210; phage(gi100014)4.51e-35Showinfo_outline
12complement(7017..7262)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F3I01_13215; phage(gi100042)3.35e-46Showinfo_outline
13complement(7219..7482)PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; F3I01_13220; phage(gi197261521)1.19e-26Showinfo_outline
14complement(7498..8256)PHAGE_Bacill_Pony_NC_022770: replication initiator protein; F3I01_13225; phage(gi568191570)1.64e-47Showinfo_outline
15complement(8240..9100)PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; F3I01_13230; phage(gi100010)6.38e-94Showinfo_outline
16complement(9101..9325)hypothetical protein; F3I01_132350.0Showinfo_outline
17complement(9514..10305)PHAGE_Clostr_phiCT453B_NC_029004: hypothetical protein; F3I01_13240; phage(gi100010)7.11e-83Showinfo_outline
18complement(10283..11134)PHAGE_Gordon_Twister6_NC_031052: tail length tape-measure protein; F3I01_13245; phage(gi100057)3.96e-54Showinfo_outline
19complement(11331..11531)PHAGE_Bacill_BM5_NC_029069: hypothetical protein; F3I01_13250; phage(gi985757872)8.79e-09Showinfo_outline
2012059..12244hypothetical protein; F3I01_132550.0Showinfo_outline
21complement(12538..13302)PHAGE_Lactoc_63301_NC_031017: hypothetical protein; F3I01_13260; phage(gi100006)1.75e-59Showinfo_outline
22complement(13384..13587)PHAGE_Bacill_Page_NC_022764: DNA binding protein; F3I01_13265; phage(gi571798156)4.01e-06Showinfo_outline
2313854..14189PHAGE_Bacill_WBeta_NC_007734: helix-turn-helix Cro and cI family protein; F3I01_13270; phage(gi85701408)8.84e-13Showinfo_outline
24complement(14659..15831)PHAGE_Bacill_250_NC_029024: helix-turn-helix domain protein; F3I01_13275; phage(gi971766626)3.52e-34Showinfo_outline
2516315..16662PHAGE_Bacill_phBC6A51_NC_004820: Transcriptional regulator, MerR family; F3I01_13280; phage(gi31415741)3.17e-19Showinfo_outline
2616846..17256PHAGE_Oenoco_phi9805_NC_023559: hypothetical protein; F3I01_13285; phage(gi589286216)1.87e-11Showinfo_outline
2717271..17615PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; F3I01_13290; phage(gi712912394)1.66e-54Showinfo_outline
28complement(18145..18534)hypothetical protein; F3I01_132950.0Showinfo_outline
29complement(18748..19077)hypothetical protein; F3I01_133000.0Showinfo_outline
30complement(19275..19679)DUF1232 domain-containing protein; F3I01_133050.0Showinfo_outline
3121223..22170PHAGE_Lactob_Lb_NC_047983: minor tail protein; F3I01_13310; phage(gi100055)9.68e-33Showinfo_outline
3222205..22414hypothetical protein; F3I01_133150.0Showinfo_outline
3322446..22796hypothetical protein; F3I01_133200.0Showinfo_outline
3422827..23111hypothetical protein; F3I01_133250.0Showinfo_outline
3523510..23887hypothetical protein; F3I01_133300.0Showinfo_outline
3623925..24518VanZ family protein; F3I01_133350.0Showinfo_outline
37complement(24643..25230)PHAGE_Bacill_Deep_Purple_NC_048667: hypothetical protein; F3I01_13340; phage(gi100007)5.58e-21Showinfo_outline
38complement(25500..25874)hypothetical protein; F3I01_133450.0Showinfo_outline
39complement(25998..26486)PHAGE_Bacill_Taylor_NC_041858: capsid maturation protease; F3I01_13350; phage(gi100067)5.97e-10Showinfo_outline
40complement(26506..27081)PHAGE_Bacill_vB_BhaS_171_NC_030904: holin; F3I01_13355; phage(gi100034)2.32e-49Showinfo_outline
41complement(27020..28318)PHAGE_Bacill_1_NC_009737: FtsK/SpoIIIE family protein; F3I01_13360; phage(gi158348423)5.43e-140Showinfo_outline
4228619..28852PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; F3I01_13365; phage(gi100025)1.83e-29Showinfo_outline
4329039..29254hypothetical protein; F3I01_133700.0Showinfo_outline
4429493..29849PHAGE_Staphy_phiRS7_NC_022914: YolD-like protein; F3I01_13375; phage(gi560185985)4.20e-13Showinfo_outline
45complement(29888..30685)PHAGE_Bacill_Aurora_NC_031121: endolysin; F3I01_13380; phage(gi100033)1.21e-123Showinfo_outline
46complement(30685..30891)PHAGE_Staphy_SpaA1_NC_018277: Holin, phage phi LC3 holin homolog; F3I01_13385; phage(gi399498884)9.32e-41Showinfo_outline
47complement(30893..31129)PHAGE_Bacill_BMBtpLA_NC_028748: XpaF1 protein; F3I01_13390; phage(gi971482496)1.70e-30Showinfo_outline
48complement(31168..36765)PHAGE_Bacill_250_NC_029024: phage minor structural protein; F3I01_13395; phage(gi971766619)0.0Showinfo_outline
49complement(36765..38243)PHAGE_Bacill_250_NC_029024: phage putative tail component; F3I01_13400; phage(gi971766621)0.0Showinfo_outline
50complement(38291..41998)PHAGE_Bacill_250_NC_029024: carbamoyl-phosphate synthase large subunit; F3I01_13405; phage(gi971766620)0.0Showinfo_outline
51complement(41991..42656)PHAGE_Bacill_250_NC_029024: gp15; F3I01_13410; phage(gi971766638)3.56e-120Showinfo_outline
52complement(42668..43072)PHAGE_Bacill_250_NC_029024: gp14-like protein; F3I01_13415; phage(gi971766655)2.30e-60Showinfo_outline
53complement(43154..43597)PHAGE_Bacill_250_NC_029024: major capsid protein; F3I01_13420; phage(gi971766650)1.45e-79Showinfo_outline
54complement(43602..44021)PHAGE_Bacill_250_NC_029024: hypothetical protein; F3I01_13425; phage(gi971766649)2.17e-91Showinfo_outline
55complement(44030..44380)PHAGE_Bacill_250_NC_029024: hypothetical protein; F3I01_13430; phage(gi971766668)2.53e-55Showinfo_outline
56complement(44377..44733)PHAGE_Bacill_250_NC_029024: gp9 protein; F3I01_13435; phage(gi971766664)5.59e-81Showinfo_outline
57complement(44730..45131)PHAGE_Bacill_250_NC_029024: gp8 protein; F3I01_13440; phage(gi971766656)5.64e-92Showinfo_outline
58complement(45140..45379)PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; F3I01_13445; phage(gi197261564)7.20e-35Showinfo_outline
59complement(45433..46329)PHAGE_Bacill_250_NC_029024: major capsid protein; F3I01_13450; phage(gi971766631)0.0Showinfo_outline
60complement(46404..47054)PHAGE_Bacill_250_NC_029024: hypothetical protein; F3I01_13455; phage(gi971766639)5.63e-117Showinfo_outline
61complement(47066..48193)PHAGE_Bacill_250_NC_029024: gp4-like protein; F3I01_13460; phage(gi971766637)5.01e-163Showinfo_outline
62complement(48197..49708)PHAGE_Bacill_250_NC_029024: phage portal protein; F3I01_13465; phage(gi971766622)0.0Showinfo_outline
63complement(49719..50996)PHAGE_Bacill_250_NC_029024: phage terminase large subunit; F3I01_13470; phage(gi971766625)0.0Showinfo_outline
64complement(50977..51876)PHAGE_Bacill_IEBH_NC_011167: terminase small subunit; F3I01_13475; phage(gi197261558)5.75e-150Showinfo_outline
65complement(51960..52175)PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; F3I01_13480; phage(gi197261557)3.03e-41Showinfo_outline
66complement(52445..52693)hypothetical protein; F3I01_134850.0Showinfo_outline
67complement(52954..53295)PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F3I01_13490; phage(gi31415777)1.04e-59Showinfo_outline
68complement(53371..53562)hypothetical protein; F3I01_134950.0Showinfo_outline
69complement(53624..53845)hypothetical protein; F3I01_135000.0Showinfo_outline
70complement(53945..54220)PHAGE_Clostr_phiCT453A_NC_028991: u-spanin; F3I01_13505; phage(gi100032)5.57e-22Showinfo_outline
Bacillus sp. SRB1LM NODE_13_length_55054_cov_65
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 55150 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download