Submission Results

Sequence Name: Not Available

GenBank Accession Number: VWVQ01000021.1

GenInfo (GI) Number: 0000000000

Download Results: VWVQ01000021.1.PHASTER.zip

gi|00000000|ref|VWVQ01000021.1| Bacillus sp. SRB3LM NODE_26_length_535095_cov_29.007006, whole 535189, gc%: 35.45%

Download summary as .txt file: summary.txt file_download

Total: 2 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
16.6Kbincomplete409418472-425143 info_outlinePHAGE_Shigel_SfIV_NC_022749(2)30.64%Show info_outline
268Kbquestionable8064444772-512841 info_outlinePHAGE_Bacill_vB_BceS_MY192_NC_048633(22)34.60%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|VWVQ01000021.1| Bacillus sp. SRB3LM NODE_26_length_535095_cov_29.007006, whole 535189, gc%: 35.45%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 9 CDS

#CDS PositionBLAST HitE-ValueSequence
1418472..419371PHAGE_Shigel_SfIV_NC_022749: ISEhe3 orfB; F3I02_15645; phage(gi557307549)3.97e-30Showinfo_outline
2419525..419881PHAGE_Salmon_118970_sal3_NC_031940: tail tip protein; F3I02_15650; phage(gi100054)8.77e-08Showinfo_outline
3420408..420815hypothetical protein; F3I02_156550.0Showinfo_outline
4421674..422246PHAGE_Dickey_vB_DsoM_JA29_NC_048053: putative baseplate hub protein; F3I02_15660; phage(gi100137)7.50e-05Showinfo_outline
5422308..422691hypothetical protein; F3I02_156650.0Showinfo_outline
6complement(422862..423113)hypothetical protein; F3I02_156700.0Showinfo_outline
7complement(423659..423931)PHAGE_Geobac_E3_NC_029073: transposase; F3I02_15675; phage(gi985758480)7.40e-09Showinfo_outline
8complement(424020..424919)PHAGE_Shigel_SfIV_NC_022749: ISEhe3 orfB; F3I02_15680; phage(gi557307549)3.97e-30Showinfo_outline
9complement(424901..425143)PHAGE_Shigel_SfIV_NC_022749: ISEhe3 orfA; F3I02_15685; phage(gi557307550)3.70e-05Showinfo_outline

Region 2, total 72 CDS

#CDS PositionBLAST HitE-ValueSequence
1444772..444783attL0.0Showinfo_outline
2454106..454498PHAGE_Escher_RCS47_NC_042128: hypothetical protein; F3I02_15835; phage(gi100027)5.44e-15Showinfo_outline
3complement(454924..455991)Ger(x)C family spore germination protein; F3I02_158400.0Showinfo_outline
4456080..456683IS21 family transposase; F3I02_158450.0Showinfo_outline
5complement(456715..456840)IS6 family transposase; F3I02_158500.0Showinfo_outline
6458082..458624hypothetical protein; F3I02_158550.0Showinfo_outline
7458676..458687attL0.0Showinfo_outline
8458904..459461PHAGE_Escher_RCS47_NC_042128: hypothetical protein; F3I02_15860; phage(gi100027)2.49e-24Showinfo_outline
9complement(459918..461074)PROPHAGE_Ralsto_GMI1000: isrso11-transposase orfb protein; F3I02_15865; phage(gi17546155)2.14e-61Showinfo_outline
10461566..461577attL0.0Showinfo_outline
11complement(461579..462394)5'-nucleotidase, lipoprotein e(P4) family; F3I02_158700.0Showinfo_outline
12463093..463307hypothetical protein; F3I02_158750.0Showinfo_outline
13463701..464183sigma-70 family RNA polymerase sigma factor; F3I02_158800.0Showinfo_outline
14464258..465487PHAGE_Escher_503458_NC_049341: hypothetical protein; F3I02_15885; phage(gi100008)9.14e-54Showinfo_outline
15465484..466251PHAGE_Escher_520873_NC_049344: primase; F3I02_15890; phage(gi100047)2.96e-53Showinfo_outline
16466379..466864PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F3I02_15895; phage(gi31415819)6.46e-109Showinfo_outline
17467174..467875PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F3I02_15900; phage(gi31415820)9.61e-165Showinfo_outline
18complement(467914..469023)PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; F3I02_15905; phage(gi100002)0.0Showinfo_outline
19469686..470894PHAGE_Bacill_phBC6A52_NC_004821: helix-turn-helix protein; F3I02_15910; phage(gi31415822)0.0Showinfo_outline
20470891..471076PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; F3I02_15915; phage(gi197261596)2.87e-05Showinfo_outline
21complement(471337..471687)PHAGE_Bacill_BceA1_NC_048628: endolysin; F3I02_15920; phage(gi100033)2.41e-19Showinfo_outline
22471870..472166PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F3I02_15925; phage(gi31415824)1.02e-61Showinfo_outline
23472129..472341PHAGE_Bacill_PfEFR_4_NC_048641: endolysin; F3I02_15930; phage(gi100033)5.97e-05Showinfo_outline
24472382..472648PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; F3I02_15935; phage(gi100007)1.34e-50Showinfo_outline
25473023..473754PHAGE_Bacill_PfEFR_4_NC_048641: putative phosphoesterase; F3I02_15940; phage(gi100037)2.58e-106Showinfo_outline
26473693..474568PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; F3I02_15945; phage(gi100011)6.65e-84Showinfo_outline
27474584..474778PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F3I02_15950; phage(gi100039)2.13e-35Showinfo_outline
28474797..475075PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; F3I02_15955; phage(gi100024)3.57e-21Showinfo_outline
29475068..475427PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; F3I02_15960; phage(gi100025)1.33e-40Showinfo_outline
30475446..475613PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F3I02_15965; phage(gi100040)9.57e-19Showinfo_outline
31475639..475890PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F3I02_15970; phage(gi100042)7.48e-23Showinfo_outline
32475911..476393PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; F3I02_15975; phage(gi100062)8.39e-28Showinfo_outline
33476433..476687PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; F3I02_15980; phage(gi100005)5.75e-48Showinfo_outline
34complement(476798..477397)undecaprenyl-diphosphatase; F3I02_159850.0Showinfo_outline
35complement(477622..478086)exosporium protein D; F3I02_159900.0Showinfo_outline
36complement(479149..479343)hypothetical protein; F3I02_159950.0Showinfo_outline
37complement(479968..480252)DUF4183 domain-containing protein; F3I02_160000.0Showinfo_outline
38480754..481038hypothetical protein; F3I02_160050.0Showinfo_outline
39481186..481197attR0.0Showinfo_outline
40481195..481206attL0.0Showinfo_outline
41481279..482286PHAGE_Synech_S_CAM7_NC_031927: hypothetical protein; F3I02_16010; phage(gi100234)9.88e-38Showinfo_outline
42483249..483719PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F3I02_16015; phage(gi100060)2.29e-63Showinfo_outline
43483716..484258PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F3I02_16020; phage(gi100061)4.59e-109Showinfo_outline
44484534..485184hypothetical protein; F3I02_160250.0Showinfo_outline
45complement(485222..485428)hypothetical protein; F3I02_160300.0Showinfo_outline
46485593..485853PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; F3I02_16035; phage(gi100059)1.61e-24Showinfo_outline
47485877..486284PHAGE_Bacill_WBeta_NC_007734: hypothetical protein; F3I02_16040; phage(gi85701427)5.51e-61Showinfo_outline
48486298..486570hypothetical protein; F3I02_160450.0Showinfo_outline
49486716..486931PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F3I02_16050; phage(gi100004)6.64e-36Showinfo_outline
50487093..487473PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F3I02_16055; phage(gi100005)2.99e-87Showinfo_outline
51487454..489226PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F3I02_16060; phage(gi100006)0.0Showinfo_outline
52489242..490456PHAGE_Bacill_vB_BceS_MY192_NC_048633: DNA adenine methyltransferase; F3I02_16065; phage(gi100041)0.0Showinfo_outline
53490434..491189PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; F3I02_16070; phage(gi100042)0.0Showinfo_outline
54491186..492373PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F3I02_16075; phage(gi100009)0.0Showinfo_outline
55492348..492650fibronectin type III domain-containing protein; F3I02_160800.0Showinfo_outline
56492659..492934PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F3I02_16085; phage(gi100010)1.02e-57Showinfo_outline
57492921..493268PHAGE_Bacill_vB_BceS_MY192_NC_048633: putative transcriptional regulator; F3I02_16090; phage(gi100045)6.64e-80Showinfo_outline
58493256..493693PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F3I02_16095; phage(gi100012)6.32e-99Showinfo_outline
59493690..494049PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F3I02_16100; phage(gi100013)8.07e-78Showinfo_outline
60494063..494647PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F3I02_16105; phage(gi100014)1.19e-140Showinfo_outline
61494707..495102PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F3I02_16110; phage(gi100015)2.97e-88Showinfo_outline
62495120..495260PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F3I02_16115; phage(gi100016)9.73e-25Showinfo_outline
63495276..500291PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F3I02_16120; phage(gi100017)0.0Showinfo_outline
64500326..501789PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; F3I02_16125; phage(gi100018)0.0Showinfo_outline
65501786..506249PHAGE_Bacill_BtCS33_NC_018085: minor structural protein; F3I02_16130; phage(gi392972724)0.0Showinfo_outline
66506261..506641PHAGE_Bacill_vB_BtS_B83_NC_048762: hypothetical protein; F3I02_16135; phage(gi100023)6.65e-44Showinfo_outline
67506737..506973PHAGE_Bacill_phBC6A51_NC_004820: XpaF1 protein; F3I02_16140; phage(gi31415801)6.34e-41Showinfo_outline
68506991..507230PHAGE_Paenib_Likha_NC_048693: hypothetical protein; F3I02_16145; phage(gi100022)1.97e-11Showinfo_outline
69507227..508318PHAGE_Bacill_phBC6A51_NC_004820: N-acetylmuramoyl-L-alanine amidase; F3I02_16150; phage(gi31415803)0.0Showinfo_outline
70508369..508380attR0.0Showinfo_outline
71509476..509487attR0.0Showinfo_outline
72512841..512852attR0.0Showinfo_outline
Bacillus sp. SRB3LM NODE_26_length_535095_cov_29
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 535189 bps
Phages: 2
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download