Submission Results

Sequence Name: Not Available

GenBank Accession Number: VXJD01000090.1

GenInfo (GI) Number: 0000000000

Download Results: VXJD01000090.1.PHASTER.zip

gi|00000000|ref|VXJD01000090.1| Bacillus subtilis strain PMKI-8-D contig_22, whole genome shotgun 51874, gc%: 34.05%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
151.7Kbincomplete5087108-51825 info_outlinePHAGE_Bacill_SPbeta_NC_001884(54)34.04%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|VXJD01000090.1| Bacillus subtilis strain PMKI-8-D contig_22, whole genome shotgun 51874, gc%: 34.05%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 89 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(108..2207)PHAGE_Bacill_Grass_NC_022771: ribonucleotide-diphosphate reductase subunit alpha; FTV58_05550; phage(gi568191694)0.0Showinfo_outline
2complement(2170..2565)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05555; phage(gi9630285)1.42e-82Showinfo_outline
3complement(2565..2912)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05560; phage(gi9630284)1.47e-33Showinfo_outline
4complement(3004..3204)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05565; phage(gi9630283)3.11e-41Showinfo_outline
5complement(3255..3449)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05570; phage(gi9630282)6.78e-42Showinfo_outline
6complement(3470..3604)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05575; phage(gi9630281)2.36e-23Showinfo_outline
7complement(3597..3821)PHAGE_Bacill_PM1_NC_020883: hypothetical protein; FTV58_05580; phage(gi472438288)9.82e-14Showinfo_outline
8complement(3828..4205)PHAGE_Bacill_PBS1_NC_043027: hypothetical protein; FTV58_05585; phage(gi100021)8.65e-27Showinfo_outline
9complement(4221..4412)PHAGE_Bacill_BSP38_NC_048726: hypothetical protein; FTV58_05590; phage(gi100130)1.80e-12Showinfo_outline
104429..4440attL0.0Showinfo_outline
11complement(4448..4777)hypothetical protein; FTV58_055950.0Showinfo_outline
12complement(5128..5475)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05600; phage(gi9630277)1.75e-70Showinfo_outline
13complement(5472..5900)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05605; phage(gi9630276)2.45e-34Showinfo_outline
14complement(6183..6731)PHAGE_Bacill_PBS1_NC_043027: hypothetical protein; FTV58_05610; phage(gi100202)8.77e-69Showinfo_outline
15complement(6758..7021)hypothetical protein; FTV58_056150.0Showinfo_outline
16complement(7056..7268)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05620; phage(gi9630272)5.56e-41Showinfo_outline
17complement(7335..7517)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05625; phage(gi9630271)2.35e-34Showinfo_outline
18complement(7530..7757)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05630; phage(gi9630270)8.55e-42Showinfo_outline
19complement(7797..8162)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05635; phage(gi9630269)1.28e-83Showinfo_outline
20complement(8165..8383)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05640; phage(gi9630268)3.97e-43Showinfo_outline
21complement(8427..9920)PHAGE_Bacill_SPbeta_NC_001884: modification methylase; FTV58_05645; phage(gi9630267)0.0Showinfo_outline
2210061..10318hypothetical protein; FTV58_056500.0Showinfo_outline
23complement(10342..10860)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05655; phage(gi9630265)2.66e-116Showinfo_outline
24complement(10869..11366)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05660; phage(gi9630264)9.28e-113Showinfo_outline
25complement(11366..11521)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05665; phage(gi9630263)5.47e-29Showinfo_outline
26complement(11514..11729)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05670; phage(gi9630262)2.48e-46Showinfo_outline
27complement(11762..11959)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05675; phage(gi9630261)3.40e-40Showinfo_outline
28complement(11996..12154)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05680; phage(gi9630260)4.05e-25Showinfo_outline
29complement(12263..12985)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05685; phage(gi9630259)1.65e-169Showinfo_outline
30complement(13014..16931)PHAGE_Bacill_SPbeta_NC_001884: putative DNA polymerase; FTV58_05690; phage(gi9630258)0.0Showinfo_outline
31complement(16944..18674)PHAGE_Bacill_SPbeta_NC_001884: putative ss-DNA-specific endonuclease; FTV58_05695; phage(gi9630257)0.0Showinfo_outline
32complement(18674..19810)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05700; phage(gi9630256)0.0Showinfo_outline
33complement(19826..21340)PHAGE_Bacill_SPbeta_NC_001884: putative replicative DNA helicase; FTV58_05705; phage(gi9630255)0.0Showinfo_outline
34complement(21355..21825)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05710; phage(gi9630254)1.79e-111Showinfo_outline
35complement(21868..22839)PHAGE_Bacill_SPbeta_NC_001884: ATP/GTP binding protein; FTV58_05715; phage(gi9630253)0.0Showinfo_outline
36complement(22922..23836)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05720; phage(gi9630252)0.0Showinfo_outline
37complement(23858..24229)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05725; phage(gi9630251)1.72e-80Showinfo_outline
38complement(24543..24923)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05730; phage(gi9630249)2.28e-86Showinfo_outline
39complement(24995..25287)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05735; phage(gi9630248)2.05e-22Showinfo_outline
40complement(25479..25874)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05740; phage(gi9630245)1.15e-87Showinfo_outline
41complement(25913..26184)hypothetical protein; FTV58_057450.0Showinfo_outline
42complement(26174..27061)PHAGE_Shewan_1/4_NC_025436: hypothetical protein; FTV58_05750; phage(gi712913451)5.55e-39Showinfo_outline
43complement(27111..27332)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05755; phage(gi9630244)3.99e-40Showinfo_outline
4427486..28298PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05760; phage(gi9630242)0.0Showinfo_outline
45complement(28471..28692)hypothetical protein; FTV58_057650.0Showinfo_outline
46complement(28771..29079)PHAGE_Bacill_BM15_NC_042140: DnaB-like helicase; FTV58_05770; phage(gi100247)6.07e-06Showinfo_outline
47complement(29531..29722)PHAGE_Bacill_Mgbh1_NC_041879: HNH endonuclease; FTV58_05775; phage(gi100046)2.90e-22Showinfo_outline
48complement(29754..29969)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05780; phage(gi9630235)8.86e-27Showinfo_outline
49complement(30143..30325)hypothetical protein; FTV58_057850.0Showinfo_outline
50complement(30357..30557)PHAGE_Bacill_Bp8p_T_NC_047744: capsid maturation protease; FTV58_05790; phage(gi100067)2.21e-13Showinfo_outline
51complement(30603..31250)hypothetical protein; FTV58_057950.0Showinfo_outline
52complement(31269..31841)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05800; phage(gi9630231)3.48e-116Showinfo_outline
53complement(31976..32212)hypothetical protein; FTV58_058050.0Showinfo_outline
54complement(32237..32875)DUF3920 family protein; FTV58_058100.0Showinfo_outline
55complement(33042..33248)hypothetical protein; FTV58_058150.0Showinfo_outline
56complement(33293..35491)PHAGE_Staphy_Twort_NC_007021: ORF008; FTV58_05820; phage(gi66391263)0.0Showinfo_outline
57complement(35867..36601)PHAGE_Entero_EFDG1_NC_029009: transposase; FTV58_05825; phage(gi971765179)3.45e-57Showinfo_outline
58complement(36618..36854)hypothetical protein; FTV58_058300.0Showinfo_outline
59complement(36898..37311)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05835; phage(gi9630224)7.76e-87Showinfo_outline
60complement(37326..37535)PHAGE_Bacill_Pascal_NC_027372: hypothetical protein; FTV58_05840; phage(gi100035)5.04e-08Showinfo_outline
61complement(38019..38249)PHAGE_Bacill_CAM003_NC_024216: hypothetical protein; FTV58_05845; phage(gi643218805)1.26e-25Showinfo_outline
62complement(38470..38664)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05850; phage(gi9630217)4.87e-38Showinfo_outline
63complement(38776..38973)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05855; phage(gi9630216)1.24e-38Showinfo_outline
64complement(39045..39263)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05860; phage(gi9630215)4.57e-43Showinfo_outline
6539446..39670PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05865; phage(gi9630214)9.96e-48Showinfo_outline
66complement(39859..40836)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05870; phage(gi9630213)0.0Showinfo_outline
67complement(40860..42242)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05875; phage(gi9630212)0.0Showinfo_outline
68complement(42349..43425)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05880; phage(gi9630211)0.0Showinfo_outline
69complement(43415..43627)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05885; phage(gi9630210)1.39e-39Showinfo_outline
70complement(43676..43993)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05890; phage(gi9630209)2.26e-70Showinfo_outline
71complement(43996..44196)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05895; phage(gi9630208)1.79e-39Showinfo_outline
72complement(44524..44649)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05900; phage(gi9630207)1.98e-21Showinfo_outline
73complement(44663..45823)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05905; phage(gi9630206)0.0Showinfo_outline
7445926..45937attR0.0Showinfo_outline
75complement(45994..46563)PHAGE_Cronob_CR3_NC_017974: putative HNH endonuclease 1; FTV58_05910; phage(gi389060093)9.99e-10Showinfo_outline
76complement(46585..46941)hypothetical protein; FTV58_059150.0Showinfo_outline
77complement(46972..47445)hypothetical protein; FTV58_059200.0Showinfo_outline
78complement(47520..47978)DUF4365 domain-containing protein; FTV58_059250.0Showinfo_outline
79complement(48015..48248)3-ketosteroid-delta-1-dehydrogenase; FTV58_059300.0Showinfo_outline
80complement(48335..48538)permease; FTV58_059350.0Showinfo_outline
81complement(48642..48794)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05940; phage(gi9630202)3.75e-20Showinfo_outline
82complement(48805..49020)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05945; phage(gi9630201)1.42e-43Showinfo_outline
83complement(49024..49275)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05950; phage(gi9630200)2.06e-51Showinfo_outline
8449346..49525hypothetical protein; FTV58_059550.0Showinfo_outline
85complement(49563..50198)hypothetical protein; FTV58_059600.0Showinfo_outline
86complement(50296..50529)PHAGE_Bacill_TsarBomba_NC_028890: hypothetical protein; FTV58_05965; phage(gi971752938)5.47e-18Showinfo_outline
87complement(50602..50823)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05970; phage(gi9630197)3.41e-43Showinfo_outline
88complement(50914..51351)hypothetical protein; FTV58_059750.0Showinfo_outline
89complement(51442..51825)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; FTV58_05980; phage(gi9630199)4.22e-11Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 51874 bps
Phages: 1
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download