Submission Results

Sequence Name: Not Available

GenBank Accession Number: VXKG01000005.1

GenInfo (GI) Number: 0000000000

Download Results: VXKG01000005.1.PHASTER.zip

gi|00000000|ref|VXKG01000005.1| Ewingella americana strain CCUG 14506T contig_0000005, whole 350825, gc%: 53.40%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
144.5Kbintact15052177056-221652 info_outlinePHAGE_Entero_mEp460_NC_019716(15)50.42%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|VXKG01000005.1| Ewingella americana strain CCUG 14506T contig_0000005, whole 350825, gc%: 53.40%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 54 CDS

#CDS PositionBLAST HitE-ValueSequence
1177056..177067attL0.0Showinfo_outline
2complement(177089..178213)PHAGE_Entero_HK022_NC_002166: integrase; F4W05_17755; phage(gi9634144)7.58e-65Showinfo_outline
3complement(178197..178439)excisionase; F4W05_177600.0Showinfo_outline
4complement(178648..179124)hypothetical protein; F4W05_177650.0Showinfo_outline
5complement(179133..179891)PHAGE_Entero_SfI_NC_027339: hypothetical protein; F4W05_17770; phage(gi849250256)2.06e-152Showinfo_outline
6complement(179913..180596)hypothetical protein; F4W05_177750.0Showinfo_outline
7complement(180593..181174)hypothetical protein; F4W05_177800.0Showinfo_outline
8complement(181189..181707)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; F4W05_17785; phage(gi428782349)8.33e-63Showinfo_outline
9complement(181814..182731)PHAGE_Pseudo_H66_NC_042342: hypothetical protein; F4W05_17790; phage(gi100016)3.42e-17Showinfo_outline
10complement(183414..184004)PHAGE_Erwini_phiEt88_NC_015295: phage repressor protein; F4W05_17795; phage(gi327198606)2.89e-08Showinfo_outline
11184111..184341PHAGE_Mannhe_phiMHaA1_NC_008201: Cro repressor; F4W05_17800; phage(gi109289971)4.27e-15Showinfo_outline
12184367..184900PHAGE_Entero_mEp460_NC_019716: hypothetical protein; F4W05_17805; phage(gi428782356)6.01e-12Showinfo_outline
13185076..185252PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; F4W05_17810; phage(gi100119)2.83e-05Showinfo_outline
14185249..186259PHAGE_Shigel_SfIV_NC_022749: replication protein; F4W05_17815; phage(gi557307567)8.61e-68Showinfo_outline
15186256..186795PHAGE_Stx2_c_86_NC_008464: DNA N-6-adenine methyltransferase Dam; F4W05_17820; phage(gi116222066)1.47e-73Showinfo_outline
16186944..187318PHAGE_Entero_mEp460_NC_019716: holliday junction resolvase; F4W05_17825; phage(gi428782363)2.91e-45Showinfo_outline
17187333..188028PHAGE_Cronob_ENT47670_NC_019927: phage antirepressor protein; F4W05_17830; phage(gi431810509)9.97e-76Showinfo_outline
18188025..189047PHAGE_Entero_mEp460_NC_019716: hypothetical protein; F4W05_17835; phage(gi428782365)3.15e-98Showinfo_outline
19189062..189409PHAGE_Shigel_SfII_NC_021857: antiterminator protein Q; F4W05_17840; phage(gi526244682)7.92e-43Showinfo_outline
20complement(189406..190623)hypothetical protein; F4W05_178450.0Showinfo_outline
21complement(190616..191767)PHAGE_Pseudo_H66_NC_042342: hypothetical protein; F4W05_17850; phage(gi100015)1.95e-23Showinfo_outline
22191955..192179PHAGE_Pectob_ZF40_NC_019522: putative DNA polymerase; F4W05_17855; phage(gi422936677)3.01e-30Showinfo_outline
23192406..193446PHAGE_Entero_mEp460_NC_019716: DNA methylase; F4W05_17860; phage(gi428782369)1.46e-171Showinfo_outline
24193524..193904PHAGE_Cronob_ENT39118_NC_019934: putative prophage membrane protein; F4W05_17865; phage(gi431811074)7.92e-42Showinfo_outline
25193891..194178PHAGE_Entero_mEp390_NC_019721: putative holin; F4W05_17870; phage(gi428782713)8.02e-22Showinfo_outline
26194175..194807PHAGE_Cronob_ENT47670_NC_019927: putative endolysin; F4W05_17875; phage(gi431810515)1.29e-93Showinfo_outline
27194804..195328PHAGE_Escher_Pollock_NC_027381: i-spanin; F4W05_17880; phage(gi849254841)1.14e-27Showinfo_outline
28195443..195685hypothetical protein; F4W05_178850.0Showinfo_outline
29195995..196483PHAGE_Entero_mEp460_NC_019716: terminase small subunit; F4W05_17890; phage(gi428782317)2.92e-52Showinfo_outline
30196483..198585PHAGE_Entero_mEp460_NC_019716: terminase large subunit; F4W05_17895; phage(gi428782318)0.0Showinfo_outline
31198582..198797PHAGE_Entero_mEp460_NC_019716: hypothetical protein; F4W05_17900; phage(gi428782319)8.86e-34Showinfo_outline
32198794..200296PHAGE_Entero_mEp460_NC_019716: portal protein; F4W05_17905; phage(gi428782320)0.0Showinfo_outline
33200241..202262PHAGE_Entero_mEp460_NC_019716: putative protease/scaffold protein; F4W05_17910; phage(gi428782321)0.0Showinfo_outline
34202346..202672PHAGE_Entero_mEp460_NC_019716: hypothetical protein; F4W05_17915; phage(gi428782322)8.89e-28Showinfo_outline
35202665..202940PHAGE_Entero_mEp460_NC_019716: hypothetical protein; F4W05_17920; phage(gi428782323)1.24e-32Showinfo_outline
36202953..203531PHAGE_Entero_c_1_NC_019706: minor tail protein; F4W05_17925; phage(gi428781743)1.72e-112Showinfo_outline
37203528..203929PHAGE_Entero_mEp460_NC_019716: minor tail protein; F4W05_17930; phage(gi428782325)1.76e-54Showinfo_outline
38203938..204675PHAGE_Entero_phi80_NC_021190: major tail protein; F4W05_17935; phage(gi824479592)7.09e-121Showinfo_outline
39204735..205142PHAGE_Entero_mEp460_NC_019716: minor tail protein; F4W05_17940; phage(gi428782327)1.32e-20Showinfo_outline
40205139..205471PHAGE_Entero_mEp460_NC_019716: tail assembly protein; F4W05_17945; phage(gi428782328)6.12e-34Showinfo_outline
41205455..209027PHAGE_Entero_phi80_NC_021190: tail length tape measure protein precursor; F4W05_17950; phage(gi824479595)0.0Showinfo_outline
42209045..209401PHAGE_Cronob_phiES15_NC_018454: putative minor tail protein; F4W05_17955; phage(gi401817607)4.88e-33Showinfo_outline
43209401..210156PHAGE_Entero_mEp235_NC_019708: minor tail protein L; F4W05_17960; phage(gi428781827)2.27e-160Showinfo_outline
44210159..210869PHAGE_Entero_mEpX2_NC_019705: minor tail protein; F4W05_17965; phage(gi428765631)1.51e-155Showinfo_outline
45210901..211326PHAGE_Entero_mEp390_NC_019721: hypothetical protein; F4W05_17970; phage(gi428782681)5.60e-20Showinfo_outline
46211364..211951PHAGE_Entero_mEp237_NC_019704: tail assembly protein I; F4W05_17975; phage(gi435439284)7.04e-95Showinfo_outline
47212015..215632PHAGE_Entero_HK225_NC_019717: central tail fiber; F4W05_17980; phage(gi428782397)0.0Showinfo_outline
48215613..216863PHAGE_Erwini_phiEa2809_NC_027340: putative tail fiber protein; F4W05_17985; phage(gi849120316)5.12e-29Showinfo_outline
49216977..217399PHAGE_Cronob_ENT39118_NC_019934: protein umuD; F4W05_17990; phage(gi431811072)7.77e-43Showinfo_outline
50217399..218664PHAGE_Salmon_vB_SosS_Oslo_NC_018279: error-prone lesion bypass DNA polymerase V; F4W05_17995; phage(gi399528790)0.0Showinfo_outline
51218800..220329PHAGE_Bacill_WBeta_NC_007734: putative site-specific recombinase; F4W05_18000; phage(gi85701406)6.16e-12Showinfo_outline
52220530..220733PHAGE_Entero_HK225_NC_019717: hypothetical protein; F4W05_18005; phage(gi428782417)1.21e-19Showinfo_outline
53220848..220859attR0.0Showinfo_outline
54complement(221104..221652)PHAGE_Thermo_THSA_485A_NC_018264: transcriptional regulator, XRE family; F4W05_18010; phage(gi397912660)4.30e-07Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 350825 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download