Submission Results

Sequence Name: Not Available

GenBank Accession Number: VYUK01000011.1

GenInfo (GI) Number: 0000000000

Download Results: VYUK01000011.1.PHASTER.zip

gi|00000000|ref|VYUK01000011.1| Enterococcus durans strain GH73 contig00011, whole genome shotgun 101343, gc%: 35.77%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 0 regions are intact, 0 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
126.7Kbquestionable703039526-66306 info_outlinePHAGE_Lister_A500_NC_009810(3)36.19%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|VYUK01000011.1| Enterococcus durans strain GH73 contig00011, whole genome shotgun 101343, gc%: 35.77%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 32 CDS

#CDS PositionBLAST HitE-ValueSequence
139526..41214PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; F6X85_09375; phage(gi371496158)1.42e-25Showinfo_outline
241204..42037energy-coupling factor transporter transmembrane protein EcfT; F6X85_093800.0Showinfo_outline
3complement(42223..42603)PHAGE_Lactoc_ul36_NC_004066: hypothetical protein; F6X85_09385; phage(gi21716074)5.96e-21Showinfo_outline
443223..43422hypothetical protein; F6X85_093900.0Showinfo_outline
543724..43742attL0.0Showinfo_outline
6complement(43748..44890)PHAGE_Strept_T12_NC_028700: site-specific recombinase; F6X85_09395; phage(gi966201482)7.72e-85Showinfo_outline
7complement(44997..45626)PHAGE_Lister_B025_NC_009812: gp35; F6X85_09400; phage(gi157325253)2.39e-38Showinfo_outline
8complement(45759..46412)hypothetical protein; F6X85_094050.0Showinfo_outline
9complement(46524..47159)PHAGE_Deep_s_D6E_NC_019544: structure protein; F6X85_09410; phage(gi423262348)4.36e-40Showinfo_outline
10complement(47242..47664)PHAGE_Lactoc_98201_NC_031064: hypothetical protein; F6X85_09415; phage(gi100003)1.40e-08Showinfo_outline
11complement(47682..48002)PHAGE_Lactob_PLE2_NC_031036: hypothetical protein; F6X85_09420; phage(gi100029)1.74e-17Showinfo_outline
1248302..49078PHAGE_Staphy_88_NC_007063: ORF019; F6X85_09425; phage(gi66396351)4.76e-93Showinfo_outline
1349093..49296hypothetical protein; F6X85_094300.0Showinfo_outline
1449311..49538helix-turn-helix domain-containing protein; F6X85_094350.0Showinfo_outline
15complement(49728..50510)hypothetical protein; F6X85_094400.0Showinfo_outline
1650562..51290PHAGE_Entero_phiFL1A_NC_013646: anti-repressor protein; F6X85_09445; phage(gi281416331)5.18e-71Showinfo_outline
1751469..51810hypothetical protein; F6X85_094500.0Showinfo_outline
1851803..52207PHAGE_Lactoc_bIL285_NC_002666: Orf14; F6X85_09455; phage(gi13095694)3.40e-28Showinfo_outline
1952706..55672PHAGE_Entero_IME_EFm5_NC_028826: tail length tape-measure protein; F6X85_09460; phage(gi971746936)0.0Showinfo_outline
2055683..56513PHAGE_Lister_vB_LmoS_293_NC_028929: tail component protein; F6X85_09465; phage(gi971756893)1.87e-62Showinfo_outline
2156522..57541PHAGE_Lister_LP_030_3_NC_024384: putative tail endopeptidase; F6X85_09470; phage(gi658607677)2.80e-127Showinfo_outline
2257541..58587PHAGE_Lister_LP_030_3_NC_024384: pectin lyase fold containing protein; F6X85_09475; phage(gi658607678)6.20e-28Showinfo_outline
2358587..60320PHAGE_Entero_IME_EFm5_NC_028826: minor tail protein; F6X85_09480; phage(gi971746935)2.90e-53Showinfo_outline
2460773..61219hypothetical protein; F6X85_094850.0Showinfo_outline
2561221..61358XkdX family protein; F6X85_094900.0Showinfo_outline
2661393..61635PHAGE_Entero_phiFL1A_NC_013646: holin; F6X85_09495; phage(gi281416381)1.13e-28Showinfo_outline
2761651..61848PHAGE_Entero_phiFL1A_NC_013646: holin; F6X85_09500; phage(gi281416382)9.97e-31Showinfo_outline
2861859..62875PHAGE_Lactob_PL_1_NC_022757: lysin; F6X85_09505; phage(gi557308014)1.48e-70Showinfo_outline
29complement(63068..63379)chromosome partitioning protein; F6X85_095100.0Showinfo_outline
3063705..64217PHAGE_Strept_P9_NC_009819: hypothetical protein; F6X85_09515; phage(gi157311186)6.20e-36Showinfo_outline
3164211..65176PHAGE_Strept_P9_NC_009819: hypothetical protein; F6X85_09520; phage(gi157311187)3.57e-24Showinfo_outline
3266306..66324attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 101343 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download