Submission Results

Sequence Name: Not Available

GenBank Accession Number: VZOY01000006.1

GenInfo (GI) Number: 0000000000

Download Results: VZOY01000006.1.PHASTER.zip

gi|00000000|ref|VZOY01000006.1| Fusobacterium naviforme strain CCUG 50052 contig_0000006, whole 250397, gc%: 52.64%

Download summary as .txt file: summary.txt file_download

Total: 3 prophage regions have been identified, of which 1 regions are intact, 2 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
116.3Kbincomplete3019118534-134896 info_outlinePHAGE_Clostr_phiCT9441A_NC_029022(5)53.74%Show info_outline
219.6Kbincomplete4022138377-158022 info_outlinePHAGE_Lactoc_98201_NC_031064(3)52.94%Show info_outline
334.4Kbintact15044193759-228252 info_outlinePHAGE_Bacter_Lily_NC_028841(17)51.77%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|VZOY01000006.1| Fusobacterium naviforme strain CCUG 50052 contig_0000006, whole 250397, gc%: 52.64%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 19 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(118534..119604)PHAGE_Clostr_phiCT453A_NC_028991: dsDNA binding protein; F7P78_06180; phage(gi100047)6.44e-09Showinfo_outline
2complement(120068..120397)hypothetical protein; F7P78_061850.0Showinfo_outline
3complement(120408..120716)PHAGE_Geobac_GBK2_NC_023612: hypothetical protein; F7P78_06190; phage(gi589893783)8.05e-05Showinfo_outline
4complement(120709..121101)PHAGE_Bacill_BalMu_1_NC_030945: hypothetical protein; F7P78_06195; phage(gi100053)9.55e-18Showinfo_outline
5complement(121177..122220)PHAGE_Bacill_BalMu_1_NC_030945: hypothetical protein; F7P78_06200; phage(gi100050)1.13e-62Showinfo_outline
6complement(122236..122580)PHAGE_Bacill_BalMu_1_NC_030945: RNA polymerase sigma factor; F7P78_06205; phage(gi100049)7.25e-10Showinfo_outline
7complement(122577..122756)hypothetical protein; F7P78_062100.0Showinfo_outline
8complement(122759..123259)PHAGE_Bacill_BalMu_1_NC_030945: rnaseH; F7P78_06215; phage(gi100048)3.86e-18Showinfo_outline
9complement(123278..123583)hypothetical protein; F7P78_062200.0Showinfo_outline
10complement(123598..124521)DUF2313 domain-containing protein; F7P78_062250.0Showinfo_outline
11complement(124518..125627)PHAGE_Thermu_OH2_NC_021784: baseplate J; F7P78_06230; phage(gi526118315)7.97e-58Showinfo_outline
12complement(125627..126034)PHAGE_Brevib_Jimmer2_NC_041976: hypothetical protein; F7P78_06235; phage(gi100028)6.37e-15Showinfo_outline
13complement(126050..126427)PHAGE_Clostr_phiCT453A_NC_028991: RNA polymerase sigma factor; F7P78_06240; phage(gi100049)2.00e-07Showinfo_outline
14complement(126439..126660)hypothetical protein; F7P78_062450.0Showinfo_outline
15complement(127697..128356)PHAGE_Clostr_phiCT453A_NC_028991: dsDNA binding protein; F7P78_06250; phage(gi100047)3.31e-46Showinfo_outline
16complement(128346..132368)PHAGE_Staphy_phiNM3_NC_008617: phage tail tape measure protein; F7P78_06255; phage(gi118725105)4.39e-45Showinfo_outline
17complement(132545..133012)hypothetical protein; F7P78_062600.0Showinfo_outline
18complement(133106..133543)hypothetical protein; F7P78_062650.0Showinfo_outline
19complement(133559..134896)PHAGE_Clostr_phiCT453A_NC_028991: clamp-loader subunit; F7P78_06270; phage(gi100041)6.97e-81Showinfo_outline

Region 2, total 22 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(138377..139807)PHAGE_Lactoc_98201_NC_031064: membrane-associated initiation of head vertex; F7P78_06310; phage(gi100034)1.90e-30Showinfo_outline
2complement(140010..140975)PHAGE_Lactoc_28201_NC_031013: hypothetical protein; F7P78_06315; phage(gi100032)1.66e-21Showinfo_outline
3141052..141267hypothetical protein; F7P78_063200.0Showinfo_outline
4complement(141320..141577)hypothetical protein; F7P78_063250.0Showinfo_outline
5complement(141593..143839)PHAGE_Lactoc_28201_NC_031013: hypothetical protein; F7P78_06330; phage(gi100031)1.11e-85Showinfo_outline
6complement(143849..145252)PHAGE_Entero_phiEf11_NC_013696: putative phage terminase B protein; F7P78_06335; phage(gi282598712)1.08e-122Showinfo_outline
7complement(145245..145739)PHAGE_Cyanop_PSS2_NC_013021: small terminase subunit; F7P78_06340; phage(gi254729463)9.53e-05Showinfo_outline
8complement(145779..146798)radical SAM protein; F7P78_063450.0Showinfo_outline
9complement(146801..147370)PHAGE_Entero_phiEf11_NC_013696: ParB-like nuclease domain protein; F7P78_06350; phage(gi282598764)3.49e-34Showinfo_outline
10complement(147367..147945)PHAGE_Lister_B054_NC_009813: gp77; F7P78_06355; phage(gi157325361)6.04e-38Showinfo_outline
11complement(148127..148792)PHAGE_Bacill_BCJA1c_NC_006557: hypothetical protein; F7P78_06360; phage(gi56694895)1.28e-16Showinfo_outline
12complement(148847..149359)PHAGE_Brevib_Jimmer2_NC_041976: hypothetical protein; F7P78_06365; phage(gi100084)1.83e-07Showinfo_outline
13complement(149356..149649)hypothetical protein; F7P78_063700.0Showinfo_outline
14complement(149597..150112)PHAGE_Entero_Tyrion_NC_031077: rnaseH; F7P78_06375; phage(gi100048)1.20e-17Showinfo_outline
15complement(150177..151280)PHAGE_Bacill_BalMu_1_NC_030945: hypothetical protein; F7P78_06380; phage(gi100050)4.65e-45Showinfo_outline
16complement(151293..151520)hypothetical protein; F7P78_063850.0Showinfo_outline
17complement(151539..151799)hypothetical protein; F7P78_063900.0Showinfo_outline
18complement(151805..152131)hypothetical protein; F7P78_063950.0Showinfo_outline
19complement(152145..152336)hypothetical protein; F7P78_064000.0Showinfo_outline
20complement(152382..153365)PHAGE_Bacill_PfEFR_5_NC_031055: RegA; F7P78_06405; phage(gi100039)5.86e-28Showinfo_outline
21complement(153247..154107)PHAGE_Bacill_Pavlov_NC_028782: DNA replication protein; F7P78_06410; phage(gi971743038)3.50e-11Showinfo_outline
22complement(154150..158022)PHAGE_Lister_P100_NC_007610: loader of DNA helicase; F7P78_06415; phage(gi100045)8.18e-16Showinfo_outline

Region 3, total 44 CDS

#CDS PositionBLAST HitE-ValueSequence
1193759..193980PHAGE_Clostr_c_st_NC_007581: putative transcriptional regulator; F7P78_06585; phage(gi80159825)3.21e-10Showinfo_outline
2complement(194019..194225)PHAGE_Clostr_c_st_NC_007581: putative transcriptional regulator; F7P78_06590; phage(gi80159825)9.54e-14Showinfo_outline
3194657..195577PHAGE_Arthro_Laroye_NC_041947: hypothetical protein; F7P78_06595; phage(gi100098)8.02e-18Showinfo_outline
4195663..195884hypothetical protein; F7P78_066000.0Showinfo_outline
5195888..196352PHAGE_Bacill_G_NC_023719: gp514; F7P78_06605; phage(gi593777969)6.06e-21Showinfo_outline
6196339..196566PHAGE_Arthro_BarretLemon_NC_031252: hypothetical protein; F7P78_06610; phage(gi100055)6.68e-06Showinfo_outline
7complement(196753..197217)hypothetical protein; F7P78_066150.0Showinfo_outline
8complement(197260..198375)PHAGE_Bacill_BalMu_1_NC_030945: hypothetical protein; F7P78_06620; phage(gi100053)2.00e-78Showinfo_outline
9complement(198682..199041)PHAGE_Bacill_BalMu_1_NC_030945: hypothetical protein; F7P78_06625; phage(gi100051)5.63e-33Showinfo_outline
10complement(199219..200289)PHAGE_Bacill_BalMu_1_NC_030945: hypothetical protein; F7P78_06630; phage(gi100050)1.88e-42Showinfo_outline
11complement(200301..200627)PHAGE_Bacill_BalMu_1_NC_030945: RNA polymerase sigma factor; F7P78_06635; phage(gi100049)5.12e-12Showinfo_outline
12complement(200624..201697)PHAGE_Bacill_BalMu_1_NC_030945: rnaseH; F7P78_06640; phage(gi100048)1.42e-14Showinfo_outline
13complement(201716..202303)PHAGE_Bacter_Lily_NC_028841: tail protein; F7P78_06645; phage(gi971748276)5.82e-18Showinfo_outline
14complement(202290..203447)PHAGE_Bacter_Lily_NC_028841: baseplate protein; F7P78_06650; phage(gi971748275)5.86e-58Showinfo_outline
15complement(203419..203760)PHAGE_Bacter_Lily_NC_028841: baseplate wedge protein; F7P78_06655; phage(gi971748274)1.70e-10Showinfo_outline
16complement(203764..204153)PHAGE_Bacter_Lily_NC_028841: tail terminator; F7P78_06660; phage(gi971748273)2.66e-14Showinfo_outline
17complement(204165..204431)hypothetical protein; F7P78_066650.0Showinfo_outline
18complement(204431..205744)PHAGE_Bacter_Lily_NC_028841: late control protein; F7P78_06670; phage(gi971748271)3.32e-41Showinfo_outline
19complement(205741..205950)PHAGE_Bacter_Lily_NC_028841: tail protein; F7P78_06675; phage(gi971748270)6.03e-12Showinfo_outline
20complement(205947..209432)PHAGE_Clostr_phiCT19406C_NC_029006: tail-tape measure protein; F7P78_06680; phage(gi971821557)1.69e-41Showinfo_outline
21complement(209606..209989)PHAGE_Bacter_Lily_NC_028841: hypothetical protein; F7P78_06685; phage(gi971748267)1.67e-09Showinfo_outline
22complement(210059..210568)PHAGE_Bacter_Lily_NC_028841: tail tube; F7P78_06690; phage(gi971748266)2.10e-35Showinfo_outline
23complement(210584..211987)PHAGE_Bacter_Lily_NC_028841: tail sheath; F7P78_06695; phage(gi971748265)1.05e-115Showinfo_outline
24complement(212006..212293)hypothetical protein; F7P78_067000.0Showinfo_outline
25complement(212241..212786)PHAGE_Bacter_Lily_NC_028841: hypothetical protein; F7P78_06705; phage(gi971748263)7.00e-06Showinfo_outline
26complement(212790..213410)PHAGE_Bacter_Lily_NC_028841: tail protein; F7P78_06710; phage(gi971748262)4.30e-14Showinfo_outline
27complement(213407..213796)hypothetical protein; F7P78_067150.0Showinfo_outline
28complement(213793..214239)hypothetical protein; F7P78_067200.0Showinfo_outline
29complement(214267..215349)PHAGE_Bacter_Lily_NC_028841: major capsid protein; F7P78_06725; phage(gi971748259)9.24e-38Showinfo_outline
30complement(215368..215781)PHAGE_Bacter_Lily_NC_028841: hypothetical protein; F7P78_06730; phage(gi971748258)4.83e-06Showinfo_outline
31complement(215782..217038)PHAGE_Bacter_Lily_NC_028841: Clp protease-like protein; F7P78_06735; phage(gi971748257)3.14e-32Showinfo_outline
32complement(217038..218549)PHAGE_Bacter_Lily_NC_028841: portal protein; F7P78_06740; phage(gi971748256)1.95e-132Showinfo_outline
33complement(218641..219570)hypothetical protein; F7P78_067450.0Showinfo_outline
34complement(219560..219769)PHAGE_Strept_DrGrey_NC_042016: hypothetical protein; F7P78_06750; phage(gi100029)3.32e-17Showinfo_outline
35complement(219899..220153)hypothetical protein; F7P78_067550.0Showinfo_outline
36complement(220163..222109)PHAGE_Bacter_Lily_NC_028841: terminase large subunit; F7P78_06760; phage(gi971748254)4.73e-141Showinfo_outline
37complement(222096..222650)PHAGE_Bacter_Lily_NC_028841: terminase small subunit; F7P78_06765; phage(gi971748253)3.68e-12Showinfo_outline
38complement(223178..223702)PHAGE_Arthro_Laroye_NC_041947: hypothetical protein; F7P78_06770; phage(gi100007)2.92e-27Showinfo_outline
39complement(223699..224835)PHAGE_Mycoba_Gaia_NC_026590: PAPS reductase; F7P78_06775; phage(gi764160184)8.52e-24Showinfo_outline
40complement(224826..225788)PHAGE_Vibrio_X29_NC_024369: DNA modification methylase; F7P78_06780; phage(gi658311236)4.82e-13Showinfo_outline
41complement(226760..227032)hypothetical protein; F7P78_067850.0Showinfo_outline
42complement(227071..227484)PHAGE_Staphy_53_NC_007049: ORF026; F7P78_06790; phage(gi66395395)5.04e-23Showinfo_outline
43complement(227496..227912)hypothetical protein; F7P78_067950.0Showinfo_outline
44complement(228001..228252)PHAGE_Thermu_OH2_NC_021784: hypothetical protein; F7P78_06800; phage(gi526118351)3.62e-07Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 250397 bps
Phages: 3
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download