Submission Results

Sequence Name: Not Available

GenBank Accession Number: VZPV01000001.1

GenInfo (GI) Number: 0000000000

Download Results: VZPV01000001.1.PHASTER.zip

gi|00000000|ref|VZPV01000001.1| Ralstonia insidiosa strain CCUG 46789 contig_0000001, whole genome 3535844, gc%: 63.60%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
151.2Kbintact120453287046-3338338 info_outlinePHAGE_Ralsto_RS138_NC_029107(36)63.64%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|VZPV01000001.1| Ralstonia insidiosa strain CCUG 46789 contig_0000001, whole genome 3535844, gc%: 63.60%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 47 CDS

#CDS PositionBLAST HitE-ValueSequence
13287046..3287342PHAGE_Ralsto_RS138_NC_029107: transcriptional regulator; F7R11_15605; phage(gi985760910)2.59e-10Showinfo_outline
23287376..3287567hypothetical protein; F7R11_156100.0Showinfo_outline
33287570..3288088PHAGE_Ralsto_RS138_NC_029107: hypothetical protein; F7R11_15615; phage(gi985760911)1.97e-09Showinfo_outline
4complement(3288096..3288533)hypothetical protein; F7R11_156200.0Showinfo_outline
53288392..3288405attL0.0Showinfo_outline
63288570..3290699PHAGE_Pseudo_D3112_NC_005178: A transposase; F7R11_15625; phage(gi38229118)0.0Showinfo_outline
73290767..3291537PHAGE_Pseudo_vB_PaeS_PAO1_Ab30_NC_026601: putative DNA transposition protein; F7R11_15630; phage(gi764161135)4.83e-67Showinfo_outline
83291527..3292168PHAGE_Pseudo_FHA0480_NC_041851: hypothetical protein; F7R11_15635; phage(gi100007)1.81e-30Showinfo_outline
93292191..3292667PHAGE_Ralsto_RS138_NC_029107: hypothetical protein; F7R11_15640; phage(gi985760918)1.19e-62Showinfo_outline
103292664..3293026PHAGE_Ralsto_RS138_NC_029107: phage protein; F7R11_15645; phage(gi985760919)1.64e-38Showinfo_outline
113293189..3293785PHAGE_Ralsto_RS138_NC_029107: hypothetical protein; F7R11_15650; phage(gi985760922)1.83e-98Showinfo_outline
123293775..3294140PHAGE_Ralsto_RS138_NC_029107: hypothetical protein; F7R11_15655; phage(gi985760923)2.70e-08Showinfo_outline
133294164..3294787PHAGE_Ralsto_RS138_NC_029107: phage capsid protein; F7R11_15660; phage(gi985760924)1.83e-89Showinfo_outline
143294797..3295069hypothetical protein; F7R11_156650.0Showinfo_outline
153295102..3295374PHAGE_Burkho_phiE255_NC_009237: gp35; F7R11_15670; phage(gi134288835)4.73e-27Showinfo_outline
163295712..3296149PHAGE_Ralsto_RS138_NC_029107: hypothetical protein; F7R11_15680; phage(gi985760929)9.94e-64Showinfo_outline
173296152..3296544PHAGE_Ralsto_RS138_NC_029107: hypothetical protein; F7R11_15685; phage(gi985760930)8.17e-74Showinfo_outline
183296548..3296991PHAGE_Ralsto_RS138_NC_029107: DNA transposition protein; F7R11_15690; phage(gi985760931)1.75e-78Showinfo_outline
193297031..3297306hypothetical protein; F7R11_156950.0Showinfo_outline
203297452..3297895PHAGE_Ralsto_RS138_NC_029107: virion protein; F7R11_15700; phage(gi985760932)2.86e-73Showinfo_outline
213297892..3298149PHAGE_Ralsto_RS138_NC_029107: hypothetical protein; F7R11_15705; phage(gi985760933)7.31e-42Showinfo_outline
223298130..3298741PHAGE_Ralsto_RS138_NC_029107: Rz protein; F7R11_15710; phage(gi985760934)3.50e-55Showinfo_outline
233298728..3298955PHAGE_Ralsto_RS138_NC_029107: hypothetical protein; F7R11_15715; phage(gi985760935)1.65e-35Showinfo_outline
243298955..3299176PHAGE_Ralsto_RS138_NC_029107: hypothetical protein; F7R11_15720; phage(gi985760936)1.07e-14Showinfo_outline
253299176..3299676PHAGE_Ralsto_RS138_NC_029107: hypothetical protein; F7R11_15725; phage(gi985760937)4.26e-106Showinfo_outline
263299669..3301447PHAGE_Ralsto_RS138_NC_029107: hypothetical protein; F7R11_15730; phage(gi985760938)0.0Showinfo_outline
273301453..3303093PHAGE_Ralsto_RS138_NC_029107: portal protein; F7R11_15735; phage(gi985760939)0.0Showinfo_outline
283303097..3304467PHAGE_Ralsto_RS138_NC_029107: virion morphogenesis protein; F7R11_15740; phage(gi985760940)0.0Showinfo_outline
293304621..3305088PHAGE_Ralsto_RS138_NC_029107: virion morphogenesis protein; F7R11_15745; phage(gi985760941)5.52e-74Showinfo_outline
303305342..3306400PHAGE_Ralsto_RS138_NC_029107: Mu-like prophage I protein; F7R11_15750; phage(gi985760943)3.86e-154Showinfo_outline
313306443..3306850PHAGE_Ralsto_RS138_NC_029107: bacteriophage protein; F7R11_15755; phage(gi985760944)4.24e-65Showinfo_outline
323306912..3307805PHAGE_Ralsto_RS138_NC_029107: head protein; F7R11_15760; phage(gi985760945)0.0Showinfo_outline
333307930..3308385PHAGE_Ralsto_RS138_NC_029107: Mu phage uncharacterized protein; F7R11_15765; phage(gi985760946)1.16e-27Showinfo_outline
343308392..3308808PHAGE_Ralsto_RS138_NC_029107: hypothetical protein; F7R11_15770; phage(gi985760947)5.55e-79Showinfo_outline
353308805..3309260PHAGE_Ralsto_RS138_NC_029107: hypothetical protein; F7R11_15775; phage(gi985760948)2.17e-47Showinfo_outline
363309473..3310237PHAGE_Ralsto_RS138_NC_029107: hypothetical protein; F7R11_15780; phage(gi985760950)1.73e-113Showinfo_outline
373310259..3310603PHAGE_Ralsto_RS138_NC_029107: hypothetical protein; F7R11_15785; phage(gi985760951)3.60e-28Showinfo_outline
383310749..3315428PHAGE_Ralsto_RS138_NC_029107: tail length tape measure protein; F7R11_15790; phage(gi985760952)0.0Showinfo_outline
393315461..3315826PHAGE_Ralsto_RS138_NC_029107: hypothetical protein; F7R11_15795; phage(gi985760953)2.66e-48Showinfo_outline
403315827..3319507PHAGE_Ralsto_RS138_NC_029107: Tai fiber; F7R11_15800; phage(gi985760954)0.0Showinfo_outline
413319518..3320684PHAGE_Ralsto_RS138_NC_029107: hypothetical protein; F7R11_15805; phage(gi985760955)2.26e-151Showinfo_outline
423320694..3323747PHAGE_Ralsto_RS138_NC_029107: hypothetical protein; F7R11_15810; phage(gi985760956)3.22e-87Showinfo_outline
433323744..3324172PHAGE_Ralsto_RS138_NC_029107: hypothetical protein; F7R11_15815; phage(gi985760957)4.89e-20Showinfo_outline
443324177..3326105PHAGE_Ralsto_RS138_NC_029107: hypothetical protein; F7R11_15820; phage(gi985760958)3.57e-82Showinfo_outline
453326095..3326319PHAGE_Ralsto_RS138_NC_029107: hypothetical protein; F7R11_15825; phage(gi985760959)9.59e-10Showinfo_outline
463326467..3327264PHAGE_Pseudo_B3_NC_006548: Dam modification methylase; F7R11_15830; phage(gi56692617)1.47e-131Showinfo_outline
473338338..3338351attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 3535844 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download