Submission Results

Sequence Name: Not Available

GenBank Accession Number: WBKH01000005.1

GenInfo (GI) Number: 0000000000

Download Results: WBKH01000005.1.PHASTER.zip

gi|00000000|ref|WBKH01000005.1| Veillonella seminalis strain CCUG 65427 contig_0000005, whole 193079, gc%: 39.62%

Download summary as .txt file: summary.txt file_download

Total: 2 prophage regions have been identified, of which 1 regions are intact, 1 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
147.8Kbintact15056109885-157697 info_outlinePHAGE_Bacter_Lily_NC_028841(14)37.81%Show info_outline
217.8Kbincomplete3017174967-192834 info_outlinePHAGE_Mycoba_UnionJack_NC_028802(1)29.58%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|WBKH01000005.1| Veillonella seminalis strain CCUG 65427 contig_0000005, whole 193079, gc%: 39.62%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 58 CDS

#CDS PositionBLAST HitE-ValueSequence
1109885..110859PHAGE_Strept_YMC_2011_NC_018285: integrase; F8R14_05500; phage(gi399498686)1.51e-15Showinfo_outline
2complement(110936..111820)leucine-rich repeat protein; F8R14_055050.0Showinfo_outline
3complement(111820..112326)hypothetical protein; F8R14_055100.0Showinfo_outline
4complement(112316..112717)hypothetical protein; F8R14_055150.0Showinfo_outline
5112921..113205hypothetical protein; F8R14_055200.0Showinfo_outline
6113362..113373attL0.0Showinfo_outline
7113412..113675hypothetical protein; F8R14_055250.0Showinfo_outline
8complement(113928..114200)hypothetical protein; F8R14_055300.0Showinfo_outline
9complement(114190..115269)PHAGE_Bacter_Lily_NC_028841: tail protein; F8R14_05535; phage(gi971748277)9.39e-13Showinfo_outline
10complement(115262..115888)PHAGE_Bacter_Lily_NC_028841: tail protein; F8R14_05540; phage(gi971748276)1.54e-33Showinfo_outline
11complement(115881..117065)PHAGE_Bacter_Lily_NC_028841: baseplate protein; F8R14_05545; phage(gi971748275)7.22e-95Showinfo_outline
12complement(117066..117386)PHAGE_Bacter_Lily_NC_028841: baseplate wedge protein; F8R14_05550; phage(gi971748274)6.24e-09Showinfo_outline
13complement(117364..117813)PHAGE_Bacter_Lily_NC_028841: tail terminator; F8R14_05555; phage(gi971748273)1.26e-25Showinfo_outline
14complement(117825..118316)PHAGE_Vibrio_X29_NC_024369: putative baseplate protein; F8R14_05560; phage(gi658311212)1.58e-15Showinfo_outline
15complement(118303..119415)PHAGE_Bacter_Lily_NC_028841: late control protein; F8R14_05565; phage(gi971748271)5.71e-57Showinfo_outline
16complement(119417..119620)PHAGE_Bacter_Lily_NC_028841: tail protein; F8R14_05570; phage(gi971748270)1.33e-11Showinfo_outline
17complement(119610..122018)PHAGE_Entero_phiP27_NC_003356: putative tail protein; F8R14_05575; phage(gi18249911)6.61e-112Showinfo_outline
18complement(122370..122663)hypothetical protein; F8R14_055800.0Showinfo_outline
19complement(122730..123257)PHAGE_Bacter_Lily_NC_028841: tail tube; F8R14_05585; phage(gi971748266)8.82e-29Showinfo_outline
20complement(123270..124727)PHAGE_Bacter_Lily_NC_028841: tail sheath; F8R14_05590; phage(gi971748265)9.91e-123Showinfo_outline
21complement(124747..125034)PHAGE_Bacter_Lily_NC_028841: hypothetical protein; F8R14_05595; phage(gi971748264)2.07e-08Showinfo_outline
22complement(125015..125515)PHAGE_Bacter_Lily_NC_028841: hypothetical protein; F8R14_05600; phage(gi971748263)9.79e-05Showinfo_outline
23complement(125515..126126)PHAGE_Bacter_Lily_NC_028841: tail protein; F8R14_05605; phage(gi971748262)3.54e-08Showinfo_outline
24complement(126123..126446)PHAGE_Bacter_Lily_NC_028841: hypothetical protein; F8R14_05610; phage(gi971748261)3.39e-06Showinfo_outline
25complement(126439..126762)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; F8R14_05615; phage(gi428782322)2.18e-06Showinfo_outline
26complement(126776..128695)PHAGE_Entero_c_1_NC_019706: head maturation protease; F8R14_05620; phage(gi428781740)8.30e-55Showinfo_outline
27complement(128607..130130)PHAGE_Synech_S_CBS3_NC_015465: lambda-like phage portal protein; F8R14_05625; phage(gi331028010)3.54e-45Showinfo_outline
28complement(130134..130349)hypothetical protein; F8R14_056300.0Showinfo_outline
29complement(130351..132066)PHAGE_Bacter_Lily_NC_028841: terminase large subunit; F8R14_05635; phage(gi971748254)2.36e-54Showinfo_outline
30complement(132146..132646)terminase small subunit; F8R14_056400.0Showinfo_outline
31complement(133119..133631)PHAGE_Clostr_PhiS63_NC_017978: gp40; F8R14_05645; phage(gi388570666)1.23e-09Showinfo_outline
32complement(134040..134825)PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8R14_05650; phage(gi31415769)7.28e-49Showinfo_outline
33complement(134822..135076)PHAGE_Staphy_B236_NC_028915: hypothetical protein; F8R14_05655; phage(gi971755317)8.48e-10Showinfo_outline
34complement(135082..135348)hypothetical protein; F8R14_056600.0Showinfo_outline
35complement(135378..135725)hypothetical protein; F8R14_056650.0Showinfo_outline
36complement(135726..136139)hypothetical protein; F8R14_056700.0Showinfo_outline
37complement(136165..136542)DUF4406 domain-containing protein; F8R14_056750.0Showinfo_outline
38complement(136539..137081)hypothetical protein; F8R14_056800.0Showinfo_outline
39complement(137074..137280)PHAGE_Rhizob_16_3_NC_011103: p066; F8R14_05685; phage(gi195546596)5.09e-05Showinfo_outline
40complement(137258..137500)hypothetical protein; F8R14_056900.0Showinfo_outline
41complement(137581..137970)PHAGE_Entero_Arya_NC_031048: RecA-like recombination protein; F8R14_05695; phage(gi100035)3.66e-25Showinfo_outline
42complement(137967..138155)hypothetical protein; F8R14_057000.0Showinfo_outline
43complement(138148..138888)PHAGE_Clostr_PhiS63_NC_017978: gp31; F8R14_05705; phage(gi388570658)9.59e-11Showinfo_outline
44complement(139279..139635)PHAGE_Psychr_Psymv2_NC_023734: phage homing endonuclease; F8R14_05710; phage(gi593779758)1.56e-06Showinfo_outline
45complement(139628..139963)PHAGE_Clostr_phiSM101_NC_008265: hypothetical protein; F8R14_05715; phage(gi110804067)1.17e-09Showinfo_outline
46complement(139968..140162)hypothetical protein; F8R14_057200.0Showinfo_outline
47complement(140268..140591)hypothetical protein; F8R14_057250.0Showinfo_outline
48140947..141630hypothetical protein; F8R14_057300.0Showinfo_outline
49complement(141769..142128)hypothetical protein; F8R14_057350.0Showinfo_outline
50142196..142489hypothetical protein; F8R14_057400.0Showinfo_outline
51complement(142445..142663)hypothetical protein; F8R14_057450.0Showinfo_outline
52complement(142678..142914)hypothetical protein; F8R14_057500.0Showinfo_outline
53complement(142901..143167)PHAGE_Strept_315.2_NC_004585: hypothetical protein; F8R14_05755; phage(gi28876255)3.81e-13Showinfo_outline
54143329..143811PHAGE_Geobac_GBSV1_NC_008376: immunity repressor protein; F8R14_05760; phage(gi115334658)6.33e-21Showinfo_outline
55143818..144243PHAGE_Thermu_OH2_NC_021784: predicted Zn peptidase; F8R14_05765; phage(gi526118363)5.60e-42Showinfo_outline
56144246..145175hypothetical protein; F8R14_057700.0Showinfo_outline
57145314..146750PHAGE_Entero_EFC_1_NC_025453: site-specific integrase; F8R14_05775; phage(gi725950572)4.11e-110Showinfo_outline
58157697..157708attR0.0Showinfo_outline

Region 2, total 20 CDS

#CDS PositionBLAST HitE-ValueSequence
1174967..174978attL0.0Showinfo_outline
2complement(175109..176782)PHAGE_Lactoc_28201_NC_031013: protector from prophage-induced early lysis; F8R14_05925; phage(gi100001)1.92e-36Showinfo_outline
3complement(176870..177025)cobalt ABC transporter; F8R14_059300.0Showinfo_outline
4177650..178630hypothetical protein; F8R14_059350.0Showinfo_outline
5178846..180078hypothetical protein; F8R14_059400.0Showinfo_outline
6complement(180227..181468)PHAGE_Thermu_P7426_NC_009804: C5 cytosine-specific DNA methylase; F8R14_05945; phage(gi157265426)1.47e-27Showinfo_outline
7complement(181503..182783)hypothetical protein; F8R14_059500.0Showinfo_outline
8complement(182787..184952)sensor histidine kinase; F8R14_059550.0Showinfo_outline
9complement(184975..186744)restriction endonuclease; F8R14_059600.0Showinfo_outline
10complement(186753..187601)PHAGE_Lactoc_WRP3_NC_027341: adenine methyltransferase; F8R14_05965; phage(gi849250927)7.49e-64Showinfo_outline
11complement(187598..188626)PHAGE_Agroba_Atu_ph07_NC_042013: hypothetical protein; F8R14_05970; phage(gi100189)3.43e-50Showinfo_outline
12complement(188623..188844)PHAGE_Bacter_Lily_NC_028841: Xre-like protein; F8R14_05975; phage(gi971748289)1.12e-17Showinfo_outline
13complement(188998..189288)RNA methyltransferase; F8R14_059800.0Showinfo_outline
14complement(189394..189873)(2Fe-2S)-binding protein; F8R14_059850.0Showinfo_outline
15complement(190272..190730)PHAGE_Paenib_Shelly_NC_041909: replication and recombination DNA helicase; F8R14_05990; phage(gi100033)2.12e-40Showinfo_outline
16complement(190758..191066)PHAGE_Paenib_Shelly_NC_041909: replication and recombination DNA helicase; F8R14_05995; phage(gi100033)2.21e-23Showinfo_outline
17191007..191018attR0.0Showinfo_outline
18complement(191342..191992)PHAGE_Acinet_Bphi_B1251_NC_019541: putative restriction-modification protein; F8R14_06000; phage(gi423261981)6.03e-07Showinfo_outline
19complement(192294..192382)tRNA0.0Showinfo_outline
20complement(192361..192834)PHAGE_Mycoba_Benedict_NC_042331: membrane-associated initiation of head vertex; F8R14_06010; phage(gi100034)3.58e-06Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 193079 bps
Phages: 2
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download