Submission Results

Sequence Name: Not Available

GenBank Accession Number: WBPF01000004.1

GenInfo (GI) Number: 0000000000

Download Results: WBPF01000004.1.PHASTER.zip

gi|00000000|ref|WBPF01000004.1| Bacillus sp. CH140a_4T NODE_4_length_53659_cov_151.627365, whole 53757, gc%: 36.03%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
148.8Kbintact120641710-50578 info_outlinePHAGE_Bacill_IEBH_NC_011167(10)36.35%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|WBPF01000004.1| Bacillus sp. CH140a_4T NODE_4_length_53659_cov_151.627365, whole 53757, gc%: 36.03%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 64 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(1710..2273)PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; F8162_00630; phage(gi712912393)8.85e-46Showinfo_outline
2complement(2408..2752)PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; F8162_00635; phage(gi712912394)7.63e-53Showinfo_outline
3complement(2765..3295)PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; F8162_00640; phage(gi712912393)1.28e-18Showinfo_outline
4complement(3616..3933)PHAGE_Bacill_IEBH_NC_011167: prophage repressor; F8162_00645; phage(gi197261591)1.45e-69Showinfo_outline
54466..5611PHAGE_Bacill_250_NC_029024: helix-turn-helix domain protein; F8162_00650; phage(gi971766626)5.79e-49Showinfo_outline
6complement(6113..6448)PHAGE_Bacill_WBeta_NC_007734: helix-turn-helix Cro and cI family protein; F8162_00655; phage(gi85701408)6.53e-13Showinfo_outline
76705..6908PHAGE_Bacill_Page_NC_022764: DNA binding protein; F8162_00660; phage(gi571798156)4.01e-06Showinfo_outline
86989..7753PHAGE_Lactoc_63301_NC_031017: hypothetical protein; F8162_00665; phage(gi100006)2.74e-64Showinfo_outline
98037..9131PHAGE_Geobac_E3_NC_029073: transposase; F8162_00670; phage(gi985758480)2.93e-159Showinfo_outline
109460..9660PHAGE_Bacill_BM5_NC_029069: hypothetical protein; F8162_00675; phage(gi985757872)2.92e-07Showinfo_outline
119662..10597PHAGE_Thermu_OH2_NC_021784: phage-type endonuclease; F8162_00680; phage(gi526118352)4.28e-132Showinfo_outline
1210612..11439PHAGE_Thermu_OH2_NC_021784: RecT protein; F8162_00685; phage(gi526118350)5.70e-137Showinfo_outline
1311599..11862PHAGE_Bacill_250_NC_029024: hypothetical protein; F8162_00690; phage(gi971766671)1.82e-17Showinfo_outline
1411897..12766PHAGE_Lactob_Lrm1_NC_011104: DNA replication protein; F8162_00695; phage(gi195661236)2.27e-32Showinfo_outline
1512779..13126PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; F8162_00700; phage(gi22855126)3.29e-07Showinfo_outline
1613123..14454PHAGE_Geobac_GBK2_NC_023612: helicase; F8162_00705; phage(gi589893809)1.20e-150Showinfo_outline
1714640..15092PHAGE_Bacill_250_NC_029024: hypothetical protein; F8162_00710; phage(gi971766652)7.03e-38Showinfo_outline
1815089..15502PHAGE_Bacill_250_NC_029024: hypothetical protein; F8162_00715; phage(gi971766653)2.01e-37Showinfo_outline
1915511..15657PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; F8162_00720; phage(gi197261527)1.70e-17Showinfo_outline
2015638..15904hypothetical protein; F8162_007250.0Showinfo_outline
2115920..16114PHAGE_Bacill_PfEFR_4_NC_048641: putative transcriptional regulator; F8162_00730; phage(gi100045)2.02e-29Showinfo_outline
22complement(16862..17251)hypothetical protein; F8162_007350.0Showinfo_outline
2317640..18269PHAGE_Brevib_Jimmer2_NC_041976: hypothetical protein; F8162_00740; phage(gi100084)1.06e-57Showinfo_outline
2418407..18778PHAGE_Bacill_250_NC_029024: hypothetical protein; F8162_00745; phage(gi971766657)7.69e-18Showinfo_outline
2519675..19923hypothetical protein; F8162_007500.0Showinfo_outline
26complement(20075..20350)hypothetical protein; F8162_007550.0Showinfo_outline
2720447..21031PHAGE_Clostr_vB_CpeS_CP51_NC_021325: putative resolvase; F8162_00760; phage(gi509140089)1.88e-37Showinfo_outline
2821044..21799PHAGE_Bacill_250_NC_029024: excinuclease ABC subunit C; F8162_00765; phage(gi971766632)2.97e-123Showinfo_outline
29complement(21875..22348)hypothetical protein; F8162_007700.0Showinfo_outline
3022499..23296PHAGE_Bacill_250_NC_029024: phage-related terminase small subunit-like protein; F8162_00775; phage(gi971766634)3.87e-118Showinfo_outline
3123268..24587PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; F8162_00780; phage(gi100004)0.0Showinfo_outline
3224587..26125PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: minor tail protein; F8162_00785; phage(gi100056)9.33e-111Showinfo_outline
3326112..27035PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: tail length tape-measure protein; F8162_00790; phage(gi100057)1.00e-60Showinfo_outline
3427085..28302PHAGE_Lactoc_98201_NC_031064: holin; F8162_00795; phage(gi100034)7.95e-72Showinfo_outline
3528324..29253PHAGE_Rhizob_vB_RleS_L338C_NC_023502: capsid protein; F8162_00800; phage(gi588498668)1.08e-73Showinfo_outline
3629260..29427PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; F8162_00805; phage(gi100060)2.15e-07Showinfo_outline
3729433..29822PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; F8162_00810; phage(gi100061)4.09e-28Showinfo_outline
3829822..30214DUF3599 family protein; F8162_008150.0Showinfo_outline
3930199..30684PHAGE_Bacill_vB_BboS_125_NC_048735: hypothetical protein; F8162_00820; phage(gi100074)7.59e-16Showinfo_outline
4030688..31089hypothetical protein; F8162_008250.0Showinfo_outline
4131105..31581PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8162_00830; phage(gi31415794)1.34e-32Showinfo_outline
4231647..32069PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8162_00835; phage(gi31415797)5.31e-19Showinfo_outline
4332123..32383hypothetical protein; F8162_008400.0Showinfo_outline
4432403..35522PHAGE_Bacill_250_NC_029024: carbamoyl-phosphate synthase large subunit; F8162_00845; phage(gi971766620)2.05e-159Showinfo_outline
4535527..36366PHAGE_Lister_vB_LmoS_188_NC_028871: holin-like putative tail component protein; F8162_00850; phage(gi971750814)8.68e-44Showinfo_outline
4636375..37994PHAGE_Geobac_E2_NC_009552: putative minor structural protein; F8162_00855; phage(gi148747747)2.80e-50Showinfo_outline
4738042..40183PHAGE_Lactoc_WP_2_NC_024149: tail spike; F8162_00860; phage(gi640885388)1.75e-31Showinfo_outline
48complement(40461..41261)hypothetical protein; F8162_008650.0Showinfo_outline
4941553..42317PHAGE_Synech_S_CRM01_NC_015569: hypothetical protein; F8162_00870; phage(gi333798320)8.68e-18Showinfo_outline
5042405..42641PHAGE_Bacill_BMBtpLA_NC_028748: XpaF1 protein; F8162_00875; phage(gi971482496)1.28e-30Showinfo_outline
5142643..42849PHAGE_Staphy_SpaA1_NC_018277: Holin, phage phi LC3 holin homolog; F8162_00880; phage(gi399498884)8.00e-36Showinfo_outline
5242849..43616PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; F8162_00885; phage(gi100075)2.80e-57Showinfo_outline
53complement(43642..43836)hypothetical protein; F8162_008900.0Showinfo_outline
54complement(43987..44271)YolD-like family protein; F8162_008950.0Showinfo_outline
55complement(44545..44628)YolD-like family protein; F8162_009000.0Showinfo_outline
56complement(44717..44938)PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; F8162_00905; phage(gi100025)8.40e-36Showinfo_outline
5745238..46533PHAGE_Bacill_1_NC_009737: FtsK/SpoIIIE family protein; F8162_00910; phage(gi158348423)6.66e-140Showinfo_outline
5846475..47050PHAGE_Bacill_vB_BhaS_171_NC_030904: holin; F8162_00915; phage(gi100034)5.49e-51Showinfo_outline
5947070..47558PHAGE_Bacill_Taylor_NC_041858: capsid maturation protease; F8162_00920; phage(gi100067)6.20e-10Showinfo_outline
6047647..48234hypothetical protein; F8162_009250.0Showinfo_outline
61complement(48282..48902)PHAGE_Bacill_Deep_Purple_NC_048667: hypothetical protein; F8162_00930; phage(gi100007)2.87e-10Showinfo_outline
62complement(48997..49260)hypothetical protein; F8162_009350.0Showinfo_outline
63complement(49381..49755)hypothetical protein; F8162_009400.0Showinfo_outline
64complement(49757..50578)PHAGE_Lactob_Lb_NC_047983: minor tail protein; F8162_00945; phage(gi100055)2.67e-72Showinfo_outline
Bacillus sp. CH140a_4T NODE_4_length_53659_cov_151
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 53757 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download