Submission Results

Sequence Name: Not Available

GenBank Accession Number: WBPF01000016.1

GenInfo (GI) Number: 0000000000

Download Results: WBPF01000016.1.PHASTER.zip

gi|00000000|ref|WBPF01000016.1| Bacillus sp. CH140a_4T NODE_33_length_888500_cov_70.045807, whole 888598, gc%: 35.57%

Download summary as .txt file: summary.txt file_download

Total: 3 prophage regions have been identified, of which 1 regions are intact, 2 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
122.2Kbincomplete6020155222-177507 info_outlinePHAGE_Bacill_vB_BhaS_171_NC_030904(4)31.00%Show info_outline
235Kbincomplete5018474585-509594 info_outlinePHAGE_Bacill_Finn_NC_020480(3)35.85%Show info_outline
339Kbintact14052787473-826569 info_outlinePHAGE_Bacill_WBeta_NC_007734(39)35.00%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|WBPF01000016.1| Bacillus sp. CH140a_4T NODE_33_length_888500_cov_70.045807, whole 888598, gc%: 35.57%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 22 CDS

#CDS PositionBLAST HitE-ValueSequence
1155222..155235attL0.0Showinfo_outline
2158943..159146PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; F8162_16190; phage(gi100006)2.02e-06Showinfo_outline
3159185..159901PHAGE_Bacill_PfEFR_4_NC_048641: endolysin; F8162_16195; phage(gi100033)2.48e-05Showinfo_outline
4160031..160231PHAGE_Bacill_1_NC_009737: hypothetical protein; F8162_16200; phage(gi155042965)1.15e-05Showinfo_outline
5160233..160415limonene cyclase; F8162_162050.0Showinfo_outline
6160539..161276PHAGE_Bacill_vB_BhaS_171_NC_030904: tail fiber protein; F8162_16210; phage(gi100052)8.01e-18Showinfo_outline
7161287..162591PHAGE_Bacill_vB_BhaS_171_NC_030904: tail assembly protein; F8162_16215; phage(gi100053)3.77e-53Showinfo_outline
8162596..162808PHAGE_Bacill_vB_BhaS_171_NC_030904: tail tip protein; F8162_16220; phage(gi100054)3.54e-09Showinfo_outline
9163184..163630PHAGE_Bacill_vB_BhaS_171_NC_030904: capsid decoration protein; F8162_16225; phage(gi100066)1.02e-06Showinfo_outline
10164711..165049hypothetical protein; F8162_162300.0Showinfo_outline
11complement(165644..166030)hypothetical protein; F8162_162350.0Showinfo_outline
12166188..166571hypothetical protein; F8162_162400.0Showinfo_outline
13complement(167176..167474)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8162_16245; phage(gi31415841)2.66e-35Showinfo_outline
14167965..168471PHAGE_Geobac_TP_84_NC_041918: hypothetical protein; F8162_16250; phage(gi100030)1.66e-17Showinfo_outline
15complement(168452..168685)PHAGE_Escher_RCS47_NC_042128: hypothetical protein; F8162_16255; phage(gi100027)1.74e-09Showinfo_outline
16169291..169551PHAGE_Paenib_Lucielle_NC_048716: hypothetical protein; F8162_16260; phage(gi100021)7.27e-21Showinfo_outline
17169555..170610PHAGE_Bacill_phBC6A51_NC_004820: N-acetylmuramoyl-L-alanine amidase; F8162_16265; phage(gi31415803)8.93e-176Showinfo_outline
18171097..171576sigma-70 family RNA polymerase sigma factor; F8162_162700.0Showinfo_outline
19171580..171801hypothetical protein; F8162_162750.0Showinfo_outline
20171931..172238hypothetical protein; F8162_162800.0Showinfo_outline
21complement(172445..172798)PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; F8162_16285; phage(gi100005)3.54e-29Showinfo_outline
22177507..177520attR0.0Showinfo_outline

Region 2, total 23 CDS

#CDS PositionBLAST HitE-ValueSequence
1474585..474596attL0.0Showinfo_outline
2complement(488052..488966)PHAGE_Thermu_P7426_NC_009804: phage XerD-like integrase; F8162_18005; phage(gi157265417)1.55e-25Showinfo_outline
3complement(489087..489159)tRNA0.0Showinfo_outline
4489122..489159attL0.0Showinfo_outline
5complement(489298..489585)hypothetical protein; F8162_180150.0Showinfo_outline
6491720..491920PHAGE_Bacill_Deep_Purple_NC_048667: hypothetical protein; F8162_18020; phage(gi100004)2.10e-05Showinfo_outline
7491921..492769hypothetical protein; F8162_180250.0Showinfo_outline
8492841..493047hypothetical protein; F8162_180300.0Showinfo_outline
9493047..493535hypothetical protein; F8162_180350.0Showinfo_outline
10493942..494184hypothetical protein; F8162_180400.0Showinfo_outline
11494397..495293PHAGE_Bacill_Curly_NC_020479: major capsid protein; F8162_18045; phage(gi460042111)2.55e-89Showinfo_outline
12495358..495846PHAGE_Bacill_Curly_NC_020479: scaffold protein; F8162_18050; phage(gi460042109)7.82e-40Showinfo_outline
13495859..496059hypothetical protein; F8162_180550.0Showinfo_outline
14496061..496576PHAGE_Bacill_Curly_NC_020479: hypothetical protein; F8162_18060; phage(gi460042172)3.55e-12Showinfo_outline
15496591..496776hypothetical protein; F8162_180650.0Showinfo_outline
16complement(497547..497993)hypothetical protein; F8162_180700.0Showinfo_outline
17complement(498151..498933)PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; F8162_18075; phage(gi85701405)5.54e-27Showinfo_outline
18complement(499088..500008)PHAGE_Thermu_P2345_NC_009803: XerD-like integrase; F8162_18080; phage(gi157265299)2.11e-19Showinfo_outline
19500211..500248attR0.0Showinfo_outline
20complement(500377..500658)hypothetical protein; F8162_180850.0Showinfo_outline
21501065..501292hypothetical protein; F8162_180900.0Showinfo_outline
22501448..502734PHAGE_Stx2_c_1717_NC_011357: penicillin-binding protein 6b; F8162_18095; phage(gi209447203)1.23e-14Showinfo_outline
23509594..509605attR0.0Showinfo_outline

Region 3, total 54 CDS

#CDS PositionBLAST HitE-ValueSequence
1787473..788672PHAGE_Bacill_Fah_NC_007814: tail protein; F8162_19625; phage(gi89152492)0.0Showinfo_outline
2788669..792802PHAGE_Bacill_Fah_NC_007814: structural protein; F8162_19630; phage(gi89152493)0.0Showinfo_outline
3792808..792820attL0.0Showinfo_outline
4792841..793077PHAGE_Bacill_phBC6A51_NC_004820: XpaF1 protein; F8162_19635; phage(gi31415801)5.21e-41Showinfo_outline
5793077..793316PHAGE_Bacill_phBC6A51_NC_004820: holin; F8162_19640; phage(gi31415802)3.08e-37Showinfo_outline
6793313..794368PHAGE_Bacill_phBC6A51_NC_004820: N-acetylmuramoyl-L-alanine amidase; F8162_19645; phage(gi31415803)0.0Showinfo_outline
7complement(794407..794736)PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; F8162_19650; phage(gi100024)7.36e-58Showinfo_outline
8complement(794804..795388)PHAGE_Bacill_phIS3501_NC_019502: phage protein; F8162_19655; phage(gi422934344)3.73e-107Showinfo_outline
9complement(795393..795590)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F8162_19660; phage(gi100025)9.49e-34Showinfo_outline
10795750..796058PHAGE_Bacill_Fah_NC_007814: hypothetical protein; F8162_19665; phage(gi89152498)1.70e-62Showinfo_outline
11796055..796237PHAGE_Bacill_Fah_NC_007814: hypothetical protein; F8162_19670; phage(gi89152499)1.72e-35Showinfo_outline
12796355..797536PHAGE_Bacill_Fah_NC_007814: FtsK/SpoIIIE ATPase; F8162_19675; phage(gi89152500)0.0Showinfo_outline
13797478..798095PHAGE_Bacill_Fah_NC_007814: hypothetical protein; F8162_19680; phage(gi89152501)1.10e-136Showinfo_outline
14complement(798128..798364)PHAGE_Bacill_Fah_NC_007814: transcription regulator; F8162_19685; phage(gi89152502)1.50e-45Showinfo_outline
15798528..798647PHAGE_Bacill_Gamma_NC_007458: hypothetical protein; F8162_19690; phage(gi77020140)7.74e-15Showinfo_outline
16798663..799526PHAGE_Bacill_Fah_NC_007814: transcription regulator; F8162_19695; phage(gi89152503)0.0Showinfo_outline
17799593..801047PHAGE_Bacill_Fah_NC_007814: site-specific serine recombinase; F8162_19700; phage(gi89152504)0.0Showinfo_outline
18801234..802526PHAGE_Bacill_Fah_NC_007814: HTH transcriptional regulator; F8162_19705; phage(gi89152505)2.13e-143Showinfo_outline
19complement(802850..803206)PHAGE_Bacill_Fah_NC_007814: transcription regulator; F8162_19710; phage(gi89152506)7.93e-80Showinfo_outline
20803366..803593PHAGE_Bacill_Fah_NC_007814: Cro/CI family transcription regulator; F8162_19715; phage(gi89152507)1.03e-45Showinfo_outline
21804036..804782PHAGE_Bacill_Fah_NC_007814: antirepressor; F8162_19720; phage(gi89152510)2.61e-102Showinfo_outline
22804825..805187PHAGE_Paenib_Vegas_NC_028767: hypothetical protein; F8162_19725; phage(gi971741622)1.66e-22Showinfo_outline
23805194..805844PHAGE_Bacill_Fah_NC_007814: hypothetical protein; F8162_19730; phage(gi89152511)4.80e-76Showinfo_outline
24805973..806917PHAGE_Bacill_Fah_NC_007814: DnaA analog, DnaD domain protein; F8162_19735; phage(gi89152512)0.0Showinfo_outline
25806933..807844PHAGE_Bacill_Fah_NC_007814: DnaC, helicase loader; F8162_19740; phage(gi89152513)0.0Showinfo_outline
26807863..808096PHAGE_Bacill_Fah_NC_007814: hypothetical protein; F8162_19745; phage(gi89152514)1.12e-43Showinfo_outline
27808089..808835PHAGE_Bacill_Fah_NC_007814: sigma70 factor; F8162_19750; phage(gi89152515)1.73e-163Showinfo_outline
28808832..809308PHAGE_Bacill_WBeta_NC_007734: hypothetical protein; F8162_19755; phage(gi85701417)2.32e-107Showinfo_outline
29809366..809909hypothetical protein; F8162_197600.0Showinfo_outline
30complement(810037..810822)sulfotransferase family protein; F8162_197650.0Showinfo_outline
31810969..811157PHAGE_Bacill_Fah_NC_007814: hypothetical protein; F8162_19770; phage(gi89152519)1.80e-30Showinfo_outline
32811310..811432PHAGE_Bacill_Gamma_NC_007458: conserved phage protein; F8162_19775; phage(gi77020188)2.01e-20Showinfo_outline
33811606..812001PHAGE_Bacill_Fah_NC_007814: HTH transcription regulator; F8162_19780; phage(gi89152520)8.28e-88Showinfo_outline
34812195..812941PHAGE_Geobac_E3_NC_029073: putative DNA cytosine methylase; F8162_19785; phage(gi985758487)1.13e-98Showinfo_outline
35812974..813186PHAGE_Bacill_Fah_NC_007814: distantly related to ECF sigma subunit; F8162_19790; phage(gi89152521)4.46e-38Showinfo_outline
36813193..813414PHAGE_Bacill_Fah_NC_007814: hypothetical protein; F8162_19795; phage(gi89152522)5.76e-39Showinfo_outline
37813419..813661hypothetical protein; F8162_198000.0Showinfo_outline
38813663..814061PHAGE_Bacill_Fah_NC_007814: hypothetical protein; F8162_19805; phage(gi89152523)6.50e-84Showinfo_outline
39814091..814345PHAGE_Bacill_Fah_NC_007814: hypothetical protein; F8162_19810; phage(gi89152525)2.89e-41Showinfo_outline
40814528..814794PHAGE_Bacill_Fah_NC_007814: hypothetical protein; F8162_19815; phage(gi89152528)2.26e-27Showinfo_outline
41814863..815246PHAGE_Bacill_Fah_NC_007814: HNH endonuclease; F8162_19820; phage(gi89152529)9.27e-87Showinfo_outline
42815347..815832PHAGE_Bacill_Fah_NC_007814: terminase small subunit; F8162_19825; phage(gi89152480)1.25e-110Showinfo_outline
43815829..817526PHAGE_Bacill_Fah_NC_007814: terminase large subunit; F8162_19830; phage(gi89152481)0.0Showinfo_outline
44817542..818840PHAGE_Bacill_Fah_NC_007814: portal protein; F8162_19835; phage(gi89152482)0.0Showinfo_outline
45818803..819423PHAGE_Bacill_Fah_NC_007814: prohead protease; F8162_19840; phage(gi89152483)1.05e-145Showinfo_outline
46819427..819439attR0.0Showinfo_outline
47819462..820640PHAGE_Bacill_Fah_NC_007814: major head protein; F8162_19845; phage(gi89152484)0.0Showinfo_outline
48820658..820948PHAGE_Bacill_Fah_NC_007814: DNA packaging protein; F8162_19850; phage(gi89152485)6.87e-61Showinfo_outline
49820945..821268PHAGE_Bacill_Fah_NC_007814: head-tail adaptor; F8162_19855; phage(gi89152486)1.43e-71Showinfo_outline
50821261..821701PHAGE_Bacill_Fah_NC_007814: head-tail joining protein; F8162_19860; phage(gi89152487)7.97e-96Showinfo_outline
51821698..822057PHAGE_Bacill_phIS3501_NC_019502: phage protein; F8162_19865; phage(gi422934335)6.21e-79Showinfo_outline
52822058..822666PHAGE_Bacill_Fah_NC_007814: major tail protein; F8162_19870; phage(gi89152489)6.92e-128Showinfo_outline
53822715..823032PHAGE_Bacill_Fah_NC_007814: hypothetical protein; F8162_19875; phage(gi89152490)1.11e-50Showinfo_outline
54823255..826569PHAGE_Bacill_Fah_NC_007814: tail length tape measure protein; F8162_19880; phage(gi89152491)0.0Showinfo_outline
Bacillus sp. CH140a_4T NODE_33_length_888500_cov_70
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 888598 bps
Phages: 3
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download